Wall clock time and date at job start Tue Mar 31 2020 17:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.73957 * 2 1 4 4 O 1.43170 * 109.71517 * 239.41470 * 2 1 3 5 5 C 1.36108 * 116.71410 * 194.10715 * 4 2 1 6 6 C 1.38697 * 119.39286 * 197.04635 * 5 4 2 7 7 C 1.38197 * 120.06634 * 180.33082 * 6 5 4 8 8 C 1.38258 * 120.10768 * 0.02562 * 7 6 5 9 9 C 1.38196 * 120.11609 * 359.91923 * 8 7 6 10 10 C 1.38698 * 120.06378 * 0.03870 * 9 8 7 11 11 O 1.36111 * 119.39800 * 180.13396 * 10 9 8 12 12 C 1.43174 * 116.70632 * 197.25383 * 11 10 9 13 13 H 1.09001 * 109.70644 * 194.04151 * 12 11 10 14 14 C 1.50696 * 109.71180 * 73.45746 * 12 11 10 15 15 O 1.21286 * 119.99605 * 341.36522 * 14 12 11 16 16 N 1.34776 * 120.00205 * 161.64038 * 14 12 11 17 17 C 1.46501 * 120.00155 * 179.50178 * 16 14 12 18 18 C 1.52997 * 109.47285 * 184.41609 * 17 16 14 19 19 N 1.46501 * 115.54895 * 280.03667 * 18 17 16 20 20 C 1.36929 * 120.00124 * 294.38894 * 19 18 17 21 21 H 1.08001 * 120.00339 * 4.32343 * 20 19 18 22 22 C 1.38815 * 120.00175 * 184.31874 * 20 19 18 23 23 N 1.31621 * 119.99569 * 5.53522 * 22 20 19 24 24 Si 1.86801 * 120.00118 * 185.53308 * 22 20 19 25 25 H 1.48496 * 109.46902 * 5.01310 * 24 22 20 26 26 H 1.48505 * 109.46806 * 125.01103 * 24 22 20 27 27 H 1.48495 * 109.46883 * 245.01081 * 24 22 20 28 28 C 1.52995 * 117.50096 * 134.32779 * 18 17 16 29 29 C 1.52995 * 60.00042 * 252.51218 * 28 18 17 30 30 H 1.09000 * 109.46555 * 291.38677 * 1 2 3 31 31 H 1.08994 * 109.47244 * 51.38194 * 1 2 3 32 32 H 1.09001 * 109.46858 * 171.38524 * 1 2 3 33 33 H 1.08000 * 119.97212 * 0.34269 * 6 5 4 34 34 H 1.07998 * 119.94666 * 180.02562 * 7 6 5 35 35 H 1.08009 * 119.93809 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.96725 * 180.02562 * 9 8 7 37 37 H 0.96995 * 119.99530 * 359.50378 * 16 14 12 38 38 H 1.09005 * 109.46931 * 304.41745 * 17 16 14 39 39 H 1.09002 * 109.47077 * 64.41109 * 17 16 14 40 40 H 0.97007 * 119.99685 * 114.38794 * 19 18 17 41 41 H 0.97003 * 119.99468 * 179.97438 * 23 22 20 42 42 H 1.09003 * 117.49614 * 0.02562 * 28 18 17 43 43 H 1.08997 * 117.50115 * 145.01629 * 28 18 17 44 44 H 1.09000 * 117.49533 * 252.50515 * 29 28 18 45 45 H 1.08998 * 117.49909 * 107.49353 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 8 2.0130 -0.6858 -1.1603 5 6 3.3294 -1.0316 -1.1629 6 6 3.9430 -1.3657 -2.3610 7 6 5.2772 -1.7256 -2.3788 8 6 6.0036 -1.7540 -1.2028 9 6 5.3985 -1.4211 -0.0058 10 6 4.0601 -1.0582 0.0188 11 8 3.4785 -0.7302 1.2049 12 6 2.0473 -0.7371 1.2434 13 1 1.7014 -0.2283 2.1433 14 6 1.5455 -2.1580 1.2383 15 8 2.2727 -3.0566 0.8711 16 7 0.2869 -2.4296 1.6365 17 6 -0.2046 -3.8097 1.6212 18 6 -1.6839 -3.8287 2.0110 19 7 -1.9601 -3.7393 3.4470 20 6 -1.5754 -4.7536 4.2826 21 1 -1.0072 -5.5863 3.8952 22 6 -1.9156 -4.7114 5.6277 23 7 -2.6990 -3.7547 6.0787 24 14 -1.2616 -6.0125 6.7978 25 1 -0.3137 -6.8974 6.0742 26 1 -0.5591 -5.3535 7.9281 27 1 -2.3921 -6.8207 7.3211 28 6 -2.6275 -4.6823 1.1614 29 6 -2.6742 -3.1566 1.0579 30 1 -0.3632 0.3748 0.9569 31 1 -0.3633 0.6414 -0.8029 32 1 -0.3633 -1.0161 -0.1539 33 1 3.3778 -1.3445 -3.2810 34 1 5.7532 -1.9850 -3.3129 35 1 7.0461 -2.0360 -1.2199 36 1 5.9684 -1.4437 0.9113 37 1 -0.2936 -1.7114 1.9332 38 1 -0.0870 -4.2261 0.6207 39 1 0.3664 -4.4066 2.3324 40 1 -2.4156 -2.9616 3.8058 41 1 -2.9370 -3.7255 7.0186 42 1 -2.1942 -5.2308 0.3250 43 1 -3.4539 -5.1779 1.6709 44 1 -3.5316 -2.6483 1.4992 45 1 -2.2719 -2.7010 0.1532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754533696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:25 Heat of formation + Delta-G solvation = -34.913468 kcal Electronic energy + Delta-G solvation = -29241.268995 eV Core-core repulsion = 25226.038689 eV Total energy + Delta-G solvation = -4015.230306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.79140 -39.31008 -37.85139 -37.58980 -37.07397 -34.21610 -33.13722 -32.76468 -30.77352 -29.76689 -29.18797 -28.07153 -26.11112 -23.96740 -23.76451 -22.77124 -22.14201 -21.64127 -19.99207 -19.16199 -18.93542 -17.98153 -17.23161 -17.00926 -16.52381 -15.82088 -15.77414 -15.16529 -15.08007 -14.80183 -14.42983 -14.32329 -14.01300 -13.91554 -13.81327 -13.50737 -13.17627 -13.14527 -12.92899 -12.67513 -12.18834 -12.02453 -11.99401 -11.92080 -11.67815 -11.22341 -11.09832 -11.00011 -10.88848 -10.49613 -10.36949 -10.26130 -9.83725 -9.75550 -9.40945 -8.93539 -8.73253 -8.67173 -8.06659 -7.13659 -5.89155 -3.19554 1.25026 1.27557 2.52834 2.75165 3.10597 3.25241 3.37838 3.45170 3.46930 3.69851 3.94805 4.31707 4.46790 4.51212 4.52015 4.63542 4.82836 4.88389 4.92325 5.13022 5.14866 5.23311 5.24173 5.32491 5.35180 5.41293 5.44620 5.57210 5.73872 5.75026 5.81814 6.03340 6.05999 6.12799 6.14739 6.38048 6.39042 6.49029 6.54943 6.58313 6.67234 6.74642 6.78366 7.30864 7.65420 7.66207 8.28801 8.31273 9.40247 9.92646 10.28082 11.32489 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.003205 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.412887 B = 8735.070809 C = 9447.506827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.065 3.935 3 H 0.095 0.905 4 O -0.301 6.301 5 C 0.062 3.938 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.111 4.111 10 C 0.068 3.932 11 O -0.282 6.282 12 C 0.034 3.966 13 H 0.150 0.850 14 C 0.494 3.506 15 O -0.523 6.523 16 N -0.703 5.703 17 C 0.147 3.853 18 C 0.127 3.873 19 N -0.689 5.689 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.185 4.185 29 C -0.185 4.185 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.401 0.599 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 10.654 -16.135 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.007 3.993 3 H 0.113 0.887 4 O -0.216 6.216 5 C 0.017 3.983 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.023 3.977 11 O -0.195 6.195 12 C -0.027 4.027 13 H 0.167 0.833 14 C 0.277 3.723 15 O -0.399 6.399 16 N -0.355 5.355 17 C 0.022 3.978 18 C 0.033 3.967 19 N -0.329 5.329 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 C -0.226 4.226 29 C -0.223 4.223 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.483 9.854 -16.225 21.685 hybrid contribution -0.354 -0.171 1.258 1.318 sum 10.129 9.683 -14.967 20.502 Atomic orbital electron populations 1.22007 0.90378 1.05074 1.04097 1.23062 0.97358 0.95408 0.83421 0.88722 1.86310 1.21919 1.73110 1.40217 1.18840 0.83838 1.02077 0.93539 1.20379 0.94776 1.02849 0.95532 1.20851 0.93239 1.01168 0.98545 1.20863 1.00123 1.01063 0.91662 1.20406 0.92208 1.00976 0.99344 1.18819 0.93675 1.01412 0.83764 1.86398 1.18467 1.83930 1.30686 1.23329 0.81292 0.95836 1.02260 0.83291 1.20584 0.82697 0.90468 0.78536 1.90741 1.55591 1.46837 1.46691 1.45967 1.12874 1.11007 1.65619 1.21301 0.94353 0.81582 1.00546 1.20143 0.88479 1.03129 0.84970 1.41789 1.69759 1.22737 0.98568 1.19205 1.28048 1.00304 0.89425 0.90914 1.24748 0.99773 0.98715 0.97273 1.69685 1.39037 1.34548 1.14514 0.86125 0.78230 0.80825 0.81075 1.20383 1.21737 1.21785 1.23350 1.04088 0.92593 1.02542 1.23083 1.02164 0.96305 1.00749 0.89361 0.90233 0.90052 0.85099 0.85314 0.85272 0.84985 0.76436 0.92004 0.90486 0.77780 0.93444 0.89918 0.88507 0.88903 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.32 37.16 0.31 -1.03 16 2 C 0.06 0.70 3.35 -26.46 -0.09 0.61 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 4 O -0.30 -4.13 9.71 -32.88 -0.32 -4.45 16 5 C 0.06 0.89 6.02 -39.14 -0.24 0.66 16 6 C -0.12 -1.43 9.96 -39.43 -0.39 -1.83 16 7 C -0.12 -1.26 10.04 -39.59 -0.40 -1.66 16 8 C -0.12 -1.29 10.04 -39.59 -0.40 -1.68 16 9 C -0.11 -1.44 9.96 -39.43 -0.39 -1.83 16 10 C 0.07 1.01 5.30 -39.14 -0.21 0.81 16 11 O -0.28 -4.23 10.02 -46.71 -0.47 -4.70 16 12 C 0.03 0.43 3.33 -27.61 -0.09 0.34 16 13 H 0.15 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.49 8.06 6.11 -10.99 -0.07 7.99 16 15 O -0.52 -10.68 15.26 -13.45 -0.21 -10.88 16 16 N -0.70 -10.73 4.33 -60.29 -0.26 -10.99 16 17 C 0.15 2.63 5.72 -4.04 -0.02 2.61 16 18 C 0.13 2.32 2.14 -131.82 -0.28 2.04 16 19 N -0.69 -15.92 5.49 -47.24 -0.26 -16.18 16 20 C -0.24 -6.33 9.57 -15.06 -0.14 -6.47 16 21 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.86 13.08 55.49 0.73 -26.14 16 24 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C -0.19 -3.13 10.10 -26.74 -0.27 -3.40 16 29 C -0.19 -2.77 10.14 -26.74 -0.27 -3.04 16 30 H 0.09 0.55 8.00 -51.93 -0.42 0.14 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.83 6.66 -51.93 -0.35 0.48 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.40 5.25 7.36 -40.82 -0.30 4.95 16 38 H 0.06 1.07 7.95 -51.93 -0.41 0.66 16 39 H 0.08 1.62 7.78 -51.93 -0.40 1.22 16 40 H 0.39 9.44 8.06 -40.82 -0.33 9.11 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 43 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -33.39 375.47 -9.60 -43.00 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.40 Total: 13.88 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.05 Total: -6.23 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.21 Total: -53.31 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.99 Total: -20.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.39 -9.60 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754533696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.083 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds