Wall clock time and date at job start Tue Mar 31 2020 17:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.73957 * 2 1 4 4 O 1.43170 * 109.71517 * 239.41470 * 2 1 3 5 5 C 1.36108 * 116.71410 * 194.10715 * 4 2 1 6 6 C 1.38697 * 119.39286 * 197.04635 * 5 4 2 7 7 C 1.38197 * 120.06634 * 180.33082 * 6 5 4 8 8 C 1.38258 * 120.10768 * 0.02562 * 7 6 5 9 9 C 1.38196 * 120.11609 * 359.91923 * 8 7 6 10 10 C 1.38698 * 120.06378 * 0.03870 * 9 8 7 11 11 O 1.36111 * 119.39800 * 180.13396 * 10 9 8 12 12 C 1.43174 * 116.70632 * 197.25383 * 11 10 9 13 13 H 1.09001 * 109.70644 * 194.04151 * 12 11 10 14 14 C 1.50696 * 109.71180 * 73.45746 * 12 11 10 15 15 O 1.21286 * 119.99605 * 341.36522 * 14 12 11 16 16 N 1.34776 * 120.00205 * 161.64038 * 14 12 11 17 17 C 1.46501 * 120.00155 * 179.50178 * 16 14 12 18 18 C 1.52997 * 109.47285 * 184.41609 * 17 16 14 19 19 N 1.46501 * 115.54895 * 280.03667 * 18 17 16 20 20 C 1.36929 * 120.00124 * 294.38894 * 19 18 17 21 21 H 1.08001 * 120.00339 * 4.32343 * 20 19 18 22 22 C 1.38815 * 120.00175 * 184.31874 * 20 19 18 23 23 N 1.31621 * 119.99569 * 5.53522 * 22 20 19 24 24 Si 1.86801 * 120.00118 * 185.53308 * 22 20 19 25 25 H 1.48496 * 109.46902 * 5.01310 * 24 22 20 26 26 H 1.48505 * 109.46806 * 125.01103 * 24 22 20 27 27 H 1.48495 * 109.46883 * 245.01081 * 24 22 20 28 28 C 1.52995 * 117.50096 * 134.32779 * 18 17 16 29 29 C 1.52995 * 60.00042 * 252.51218 * 28 18 17 30 30 H 1.09000 * 109.46555 * 291.38677 * 1 2 3 31 31 H 1.08994 * 109.47244 * 51.38194 * 1 2 3 32 32 H 1.09001 * 109.46858 * 171.38524 * 1 2 3 33 33 H 1.08000 * 119.97212 * 0.34269 * 6 5 4 34 34 H 1.07998 * 119.94666 * 180.02562 * 7 6 5 35 35 H 1.08009 * 119.93809 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.96725 * 180.02562 * 9 8 7 37 37 H 0.96995 * 119.99530 * 359.50378 * 16 14 12 38 38 H 1.09005 * 109.46931 * 304.41745 * 17 16 14 39 39 H 1.09002 * 109.47077 * 64.41109 * 17 16 14 40 40 H 0.97007 * 119.99685 * 114.38794 * 19 18 17 41 41 H 0.97003 * 119.99468 * 179.97438 * 23 22 20 42 42 H 1.09003 * 117.49614 * 0.02562 * 28 18 17 43 43 H 1.08997 * 117.50115 * 145.01629 * 28 18 17 44 44 H 1.09000 * 117.49533 * 252.50515 * 29 28 18 45 45 H 1.08998 * 117.49909 * 107.49353 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 8 2.0130 -0.6858 -1.1603 5 6 3.3294 -1.0316 -1.1629 6 6 3.9430 -1.3657 -2.3610 7 6 5.2772 -1.7256 -2.3788 8 6 6.0036 -1.7540 -1.2028 9 6 5.3985 -1.4211 -0.0058 10 6 4.0601 -1.0582 0.0188 11 8 3.4785 -0.7302 1.2049 12 6 2.0473 -0.7371 1.2434 13 1 1.7014 -0.2283 2.1433 14 6 1.5455 -2.1580 1.2383 15 8 2.2727 -3.0566 0.8711 16 7 0.2869 -2.4296 1.6365 17 6 -0.2046 -3.8097 1.6212 18 6 -1.6839 -3.8287 2.0110 19 7 -1.9601 -3.7393 3.4470 20 6 -1.5754 -4.7536 4.2826 21 1 -1.0072 -5.5863 3.8952 22 6 -1.9156 -4.7114 5.6277 23 7 -2.6990 -3.7547 6.0787 24 14 -1.2616 -6.0125 6.7978 25 1 -0.3137 -6.8974 6.0742 26 1 -0.5591 -5.3535 7.9281 27 1 -2.3921 -6.8207 7.3211 28 6 -2.6275 -4.6823 1.1614 29 6 -2.6742 -3.1566 1.0579 30 1 -0.3632 0.3748 0.9569 31 1 -0.3633 0.6414 -0.8029 32 1 -0.3633 -1.0161 -0.1539 33 1 3.3778 -1.3445 -3.2810 34 1 5.7532 -1.9850 -3.3129 35 1 7.0461 -2.0360 -1.2199 36 1 5.9684 -1.4437 0.9113 37 1 -0.2936 -1.7114 1.9332 38 1 -0.0870 -4.2261 0.6207 39 1 0.3664 -4.4066 2.3324 40 1 -2.4156 -2.9616 3.8058 41 1 -2.9370 -3.7255 7.0186 42 1 -2.1942 -5.2308 0.3250 43 1 -3.4539 -5.1779 1.6709 44 1 -3.5316 -2.6483 1.4992 45 1 -2.2719 -2.7010 0.1532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754533696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:24 Heat of formation + Delta-G solvation = -56.478385 kcal Electronic energy + Delta-G solvation = -29242.204120 eV Core-core repulsion = 25226.038689 eV Total energy + Delta-G solvation = -4016.165431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.78430 -40.54805 -39.10287 -38.59187 -38.20317 -35.56364 -34.96586 -33.74776 -31.68804 -31.66888 -30.07368 -29.16302 -27.32821 -25.95972 -24.63319 -23.69496 -23.38142 -22.80165 -21.24520 -20.48141 -19.93222 -19.18681 -19.02864 -18.06851 -17.58896 -17.28346 -16.87646 -16.40427 -16.15731 -15.98206 -15.72780 -15.59929 -15.43516 -15.06598 -14.85787 -14.85702 -14.75133 -14.15227 -13.74117 -13.64526 -13.58544 -13.37637 -13.03884 -12.90243 -12.82885 -12.76730 -12.54877 -12.29297 -12.19998 -12.05294 -12.01349 -11.62729 -11.42013 -11.13514 -11.01696 -10.61990 -10.11798 -9.61576 -9.07600 -9.01203 -7.98998 -5.26876 0.32046 0.36218 1.33353 1.43064 1.45470 1.53788 1.75724 2.10621 2.19228 2.50255 2.78093 3.01512 3.05297 3.35289 3.51193 3.59995 3.63144 3.68957 3.81232 3.98888 4.04125 4.14334 4.16561 4.27922 4.30061 4.43457 4.50185 4.66755 4.70125 4.76495 4.82548 4.90080 4.91786 5.00956 5.14543 5.16114 5.20390 5.24692 5.31792 5.40418 5.51827 5.53471 5.71393 5.85464 6.24607 6.33341 6.45789 7.07388 7.31127 8.03558 8.28015 9.23065 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.003205 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.412887 B = 8735.070809 C = 9447.506827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.065 3.935 3 H 0.116 0.884 4 O -0.316 6.316 5 C 0.040 3.960 6 C -0.130 4.130 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.037 3.963 11 O -0.299 6.299 12 C 0.032 3.968 13 H 0.180 0.820 14 C 0.491 3.509 15 O -0.570 6.570 16 N -0.691 5.691 17 C 0.161 3.839 18 C 0.102 3.898 19 N -0.697 5.697 20 C -0.231 4.231 21 H 0.066 0.934 22 C -0.065 4.065 23 N -0.961 5.961 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.291 1.291 28 C -0.188 4.188 29 C -0.147 4.147 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.413 0.587 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.380 0.620 41 H 0.251 0.749 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 11.632 -18.046 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.008 3.992 3 H 0.134 0.866 4 O -0.231 6.231 5 C -0.004 4.004 6 C -0.149 4.149 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.007 4.007 11 O -0.213 6.213 12 C -0.028 4.028 13 H 0.197 0.803 14 C 0.276 3.724 15 O -0.449 6.449 16 N -0.344 5.344 17 C 0.035 3.965 18 C 0.009 3.991 19 N -0.335 5.335 20 C -0.362 4.362 21 H 0.084 0.916 22 C -0.258 4.258 23 N -0.611 5.611 24 Si 0.790 3.210 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.218 1.218 28 C -0.228 4.228 29 C -0.184 4.184 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.213 0.787 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.805 10.844 -18.174 23.762 hybrid contribution -0.402 -0.496 1.732 1.846 sum 10.403 10.348 -16.442 22.037 Atomic orbital electron populations 1.22086 0.88461 1.04542 1.06207 1.23361 0.98741 0.95643 0.81458 0.86625 1.86273 1.21809 1.73597 1.41440 1.19151 0.84222 1.02960 0.94103 1.20769 0.95811 1.02737 0.95558 1.21308 0.92618 0.99423 0.99881 1.21283 1.01589 0.99736 0.90924 1.20745 0.92056 1.01489 1.00650 1.19165 0.94566 1.03038 0.83975 1.86356 1.19466 1.84126 1.31335 1.23588 0.80684 0.93694 1.04862 0.80337 1.21272 0.82231 0.91679 0.77199 1.90709 1.56787 1.48658 1.48742 1.45852 1.12992 1.10334 1.65173 1.20962 0.93418 0.82550 0.99574 1.20271 0.89119 1.06559 0.83120 1.41795 1.69641 1.21626 1.00485 1.19401 1.26402 1.00448 0.89989 0.91585 1.25365 1.00939 1.00750 0.98724 1.69790 1.40749 1.36201 1.14349 0.85273 0.77556 0.78916 0.79226 1.19937 1.22105 1.21843 1.23357 1.02757 0.94283 1.02391 1.23158 1.00300 0.94881 1.00098 0.86879 0.88552 0.91725 0.83677 0.81886 0.82183 0.84598 0.74968 0.91370 0.94460 0.78676 0.93969 0.87917 0.90329 0.88542 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.32 71.98 0.60 -1.60 16 2 C 0.06 1.29 3.35 30.77 0.10 1.39 16 3 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 4 O -0.32 -8.40 9.71 -82.54 -0.80 -9.20 16 5 C 0.04 1.15 6.02 22.55 0.14 1.28 16 6 C -0.13 -3.05 9.96 22.37 0.22 -2.83 16 7 C -0.11 -2.17 10.04 22.26 0.22 -1.95 16 8 C -0.12 -2.35 10.04 22.26 0.22 -2.12 16 9 C -0.13 -3.39 9.96 22.37 0.22 -3.17 16 10 C 0.04 1.11 5.30 22.55 0.12 1.23 16 11 O -0.30 -9.04 10.02 -69.36 -0.69 -9.73 16 12 C 0.03 0.79 3.33 30.02 0.10 0.89 16 13 H 0.18 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.49 15.95 6.11 87.66 0.54 16.49 16 15 O -0.57 -23.83 15.26 15.12 0.23 -23.60 16 16 N -0.69 -20.60 4.33 -463.06 -2.01 -22.60 16 17 C 0.16 5.72 5.72 86.38 0.49 6.22 16 18 C 0.10 3.63 2.14 3.60 0.01 3.64 16 19 N -0.70 -32.24 5.49 -303.36 -1.66 -33.90 16 20 C -0.23 -12.35 9.57 84.04 0.80 -11.54 16 21 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 22 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 23 N -0.96 -56.18 13.08 21.65 0.28 -55.90 16 24 Si 0.96 45.98 29.56 68.60 2.03 48.01 16 25 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 28 C -0.19 -6.04 10.10 30.59 0.31 -5.73 16 29 C -0.15 -3.99 10.14 30.59 0.31 -3.68 16 30 H 0.11 1.01 8.00 -2.39 -0.02 0.99 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.15 6.66 -2.39 -0.02 1.13 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.41 10.15 7.36 -92.71 -0.68 9.47 16 38 H 0.07 2.33 7.95 -2.38 -0.02 2.32 16 39 H 0.04 1.62 7.78 -2.39 -0.02 1.60 16 40 H 0.38 18.53 8.06 -92.70 -0.75 17.78 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.10 2.89 8.09 -2.39 -0.02 2.87 16 43 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -74.94 375.47 1.85 -73.10 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.40 Total: 38.47 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 4.88 Total: -4.63 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.39 Total: -112.40 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.27 Total: -42.53 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.94 1.85 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754533696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.617 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds