Wall clock time and date at job start Tue Mar 31 2020 17:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.73952 * 2 1 4 4 O 1.43179 * 109.70874 * 120.61348 * 2 1 3 5 5 C 1.36116 * 116.69385 * 165.94011 * 4 2 1 6 6 C 1.38704 * 119.39609 * 162.80186 * 5 4 2 7 7 C 1.38189 * 120.06951 * 179.80487 * 6 5 4 8 8 C 1.38252 * 120.10896 * 0.02562 * 7 6 5 9 9 C 1.38190 * 120.11775 * 0.04968 * 8 7 6 10 10 C 1.38703 * 120.06521 * 359.96591 * 9 8 7 11 11 O 1.36112 * 119.39769 * 179.80547 * 10 9 8 12 12 C 1.43180 * 116.71373 * 162.95577 * 11 10 9 13 13 H 1.09002 * 109.70778 * 286.47806 * 12 11 10 14 14 C 1.50696 * 109.70310 * 165.89927 * 12 11 10 15 15 O 1.21278 * 120.00397 * 342.87103 * 14 12 11 16 16 N 1.34777 * 119.99744 * 162.87940 * 14 12 11 17 17 C 1.46498 * 120.00134 * 183.81298 * 16 14 12 18 18 C 1.53003 * 109.47566 * 176.17146 * 17 16 14 19 19 N 1.46499 * 115.55032 * 262.06293 * 18 17 16 20 20 C 1.36932 * 119.99764 * 295.48058 * 19 18 17 21 21 H 1.07998 * 120.00202 * 4.89846 * 20 19 18 22 22 C 1.38814 * 119.99895 * 184.89718 * 20 19 18 23 23 N 1.31621 * 120.00170 * 5.98099 * 22 20 19 24 24 Si 1.86799 * 120.00190 * 185.97594 * 22 20 19 25 25 H 1.48496 * 109.47230 * 94.95584 * 24 22 20 26 26 H 1.48502 * 109.47483 * 214.95684 * 24 22 20 27 27 H 1.48501 * 109.47159 * 334.95656 * 24 22 20 28 28 C 1.53002 * 117.49981 * 116.34963 * 18 17 16 29 29 C 1.53001 * 60.00085 * 252.51706 * 28 18 17 30 30 H 1.09003 * 109.46792 * 164.65504 * 1 2 3 31 31 H 1.08998 * 109.47140 * 284.65325 * 1 2 3 32 32 H 1.09000 * 109.47031 * 44.65271 * 1 2 3 33 33 H 1.08001 * 119.96566 * 359.82505 * 6 5 4 34 34 H 1.07997 * 119.94734 * 180.02562 * 7 6 5 35 35 H 1.08003 * 119.94241 * 180.02562 * 8 7 6 36 36 H 1.07997 * 119.97461 * 180.24648 * 9 8 7 37 37 H 0.97001 * 120.00007 * 3.80599 * 16 14 12 38 38 H 1.09005 * 109.47228 * 296.17057 * 17 16 14 39 39 H 1.09000 * 109.47536 * 56.17146 * 17 16 14 40 40 H 0.96996 * 119.99714 * 115.48253 * 19 18 17 41 41 H 0.96993 * 120.00366 * 180.02562 * 23 22 20 42 42 H 1.09002 * 117.49606 * 0.02562 * 28 18 17 43 43 H 1.08996 * 117.50108 * 145.02237 * 28 18 17 44 44 H 1.09008 * 117.49748 * 252.51448 * 29 28 18 45 45 H 1.08998 * 117.50185 * 107.49369 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0129 -0.6864 1.1600 5 6 3.3297 -1.0312 1.1626 6 6 3.9442 -1.3629 2.3610 7 6 5.2793 -1.7190 2.3792 8 6 6.0062 -1.7451 1.2035 9 6 5.4004 -1.4143 0.0063 10 6 4.0608 -1.0557 -0.0189 11 8 3.4789 -0.7286 -1.2051 12 6 2.0476 -0.7354 -1.2434 13 1 1.6847 -1.7632 -1.2401 14 6 1.5693 -0.0316 -2.4872 15 8 2.3230 0.6928 -3.1019 16 7 0.3038 -0.2072 -2.9162 17 6 -0.1368 0.4096 -4.1699 18 6 -1.5735 -0.0207 -4.4727 19 7 -1.7146 -1.1319 -5.4170 20 6 -1.3100 -0.9815 -6.7165 21 1 -0.8150 -0.0730 -7.0263 22 6 -1.5361 -1.9968 -7.6357 23 7 -2.2419 -3.0526 -7.2899 24 14 -0.8389 -1.8647 -9.3637 25 1 0.4622 -2.5775 -9.4283 26 1 -1.7873 -2.4771 -10.3284 27 1 -0.6372 -0.4343 -9.7081 28 6 -2.6470 1.0692 -4.4981 29 6 -2.5938 0.0748 -3.3366 30 1 -0.3633 -0.9911 -0.2720 31 1 -0.3633 0.2600 0.9942 32 1 -0.3633 0.7311 -0.7223 33 1 3.3786 -1.3432 3.2809 34 1 5.7557 -1.9773 3.3134 35 1 7.0494 -2.0242 1.2207 36 1 5.9694 -1.4394 -0.9113 37 1 -0.3153 -0.7420 -2.3950 38 1 -0.0948 1.4947 -4.0754 39 1 0.5168 0.0900 -4.9815 40 1 -2.0946 -1.9740 -5.1217 41 1 -2.3996 -3.7622 -7.9320 42 1 -2.3295 2.0929 -4.2995 43 1 -3.4584 0.9599 -5.2176 44 1 -3.3703 -0.6890 -3.2920 45 1 -2.2416 0.4441 -2.3735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754533697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:28 Heat of formation + Delta-G solvation = -56.046412 kcal Electronic energy + Delta-G solvation = -28561.884694 eV Core-core repulsion = 24545.737995 eV Total energy + Delta-G solvation = -4016.146699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.67696 -40.87795 -39.16116 -38.69296 -38.28996 -35.64179 -34.92610 -33.84949 -31.75102 -31.68797 -30.13758 -29.22188 -27.39384 -25.94820 -24.74382 -23.79695 -23.37363 -22.33297 -21.47140 -20.68863 -20.00737 -19.25677 -19.09476 -18.25891 -17.47182 -17.12044 -16.89298 -16.73258 -16.12510 -16.07837 -15.76831 -15.74718 -15.38971 -15.36013 -15.04753 -14.86308 -14.68383 -14.25612 -13.87871 -13.63967 -13.51383 -13.33247 -13.02086 -12.93033 -12.83770 -12.83447 -12.39259 -12.28307 -12.19532 -12.07110 -11.99190 -11.64453 -11.59772 -11.17011 -11.01255 -10.61504 -10.21955 -9.68936 -9.15748 -9.06248 -7.99003 -5.27389 0.26288 0.27405 1.10088 1.43873 1.45973 1.47689 1.53416 1.90162 2.40942 2.50485 2.70989 2.94399 3.03360 3.35221 3.39382 3.48251 3.49529 3.65174 3.80466 3.82530 4.05567 4.10622 4.17318 4.25449 4.28129 4.39598 4.46847 4.59913 4.69494 4.72254 4.81586 4.88169 4.89712 5.03578 5.08299 5.16041 5.19417 5.21202 5.25426 5.42193 5.49039 5.53415 5.67671 5.79127 6.24640 6.27705 6.34868 6.97104 7.30254 8.04451 8.26585 9.23226 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.002782 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.454408 B =10061.887822 C =11027.320743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.069 3.931 3 H 0.082 0.918 4 O -0.301 6.301 5 C 0.027 3.973 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.110 4.110 9 C -0.129 4.129 10 C 0.021 3.979 11 O -0.312 6.312 12 C 0.040 3.960 13 H 0.119 0.881 14 C 0.525 3.475 15 O -0.563 6.563 16 N -0.692 5.692 17 C 0.157 3.843 18 C 0.097 3.903 19 N -0.701 5.701 20 C -0.231 4.231 21 H 0.071 0.929 22 C -0.069 4.069 23 N -0.964 5.964 24 Si 0.963 3.037 25 H -0.293 1.293 26 H -0.294 1.294 27 H -0.270 1.270 28 C -0.182 4.182 29 C -0.153 4.153 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 4.834 24.618 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 H 0.100 0.900 4 O -0.217 6.217 5 C -0.017 4.017 6 C -0.135 4.135 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.148 4.148 10 C -0.024 4.024 11 O -0.226 6.226 12 C -0.021 4.021 13 H 0.136 0.864 14 C 0.310 3.690 15 O -0.441 6.441 16 N -0.346 5.346 17 C 0.032 3.968 18 C 0.004 3.996 19 N -0.339 5.339 20 C -0.363 4.363 21 H 0.089 0.911 22 C -0.262 4.262 23 N -0.614 5.614 24 Si 0.792 3.208 25 H -0.221 1.221 26 H -0.221 1.221 27 H -0.195 1.195 28 C -0.222 4.222 29 C -0.190 4.190 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.180 0.820 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.360 5.421 23.935 26.266 hybrid contribution -0.179 -0.740 -1.592 1.765 sum 9.181 4.681 22.343 24.605 Atomic orbital electron populations 1.22068 0.87744 1.05071 1.06121 1.23058 0.99027 0.94792 0.81901 0.90041 1.86328 1.21605 1.73351 1.40368 1.19281 0.84577 1.03849 0.94030 1.20828 0.95626 1.01722 0.95319 1.21394 0.92507 0.98856 0.99879 1.21330 1.01637 0.99122 0.90653 1.20762 0.91466 1.01641 1.00929 1.19413 0.95004 1.04263 0.83701 1.86336 1.19606 1.85541 1.31144 1.23114 0.81297 1.02223 0.95431 0.86385 1.19905 0.82455 0.81459 0.85216 1.90722 1.55689 1.39225 1.58457 1.45897 1.11163 1.53070 1.24468 1.21135 0.94314 0.96899 0.84496 1.20336 0.88943 0.93753 0.96540 1.41867 1.74367 1.11541 1.06115 1.19438 1.29231 1.00890 0.86720 0.91086 1.25436 1.01623 0.97487 1.01662 1.69799 1.44913 1.10709 1.35980 0.85279 0.77196 0.77721 0.80571 1.22100 1.22055 1.19468 1.23397 1.01778 0.95798 1.01265 1.23239 1.00240 1.01980 0.93575 0.89539 0.88048 0.88642 0.82781 0.81391 0.81966 0.84828 0.74673 0.90383 0.93771 0.78971 0.94019 0.87222 0.90624 0.88839 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.17 71.98 0.59 -1.48 16 2 C 0.07 1.47 3.17 30.75 0.10 1.57 16 3 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 4 O -0.30 -6.76 10.07 -82.64 -0.83 -7.59 16 5 C 0.03 0.64 6.49 22.56 0.15 0.79 16 6 C -0.12 -2.00 9.96 22.37 0.22 -1.77 16 7 C -0.11 -1.43 10.04 22.26 0.22 -1.20 16 8 C -0.11 -1.66 10.04 22.26 0.22 -1.43 16 9 C -0.13 -2.88 9.96 22.37 0.22 -2.66 16 10 C 0.02 0.56 6.49 22.56 0.15 0.70 16 11 O -0.31 -10.00 9.67 -69.33 -0.67 -10.67 16 12 C 0.04 1.06 2.93 30.00 0.09 1.15 16 13 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 14 C 0.53 16.55 6.73 87.66 0.59 17.14 16 15 O -0.56 -23.06 16.60 15.26 0.25 -22.81 16 16 N -0.69 -19.08 4.45 -463.06 -2.06 -21.14 16 17 C 0.16 5.30 5.86 86.38 0.51 5.80 16 18 C 0.10 3.36 2.41 3.61 0.01 3.37 16 19 N -0.70 -32.96 5.49 -303.34 -1.66 -34.63 16 20 C -0.23 -12.45 9.47 84.03 0.80 -11.66 16 21 H 0.07 3.79 7.84 -2.91 -0.02 3.77 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.96 -57.58 13.09 21.65 0.28 -57.30 16 24 Si 0.96 46.37 29.56 68.60 2.03 48.39 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 28 C -0.18 -5.49 10.10 30.60 0.31 -5.18 16 29 C -0.15 -3.85 9.35 30.60 0.29 -3.57 16 30 H 0.09 0.98 7.52 -2.39 -0.02 0.96 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.18 7.19 -2.39 -0.02 1.16 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.41 8.93 5.98 -92.71 -0.55 8.38 16 38 H 0.08 2.42 7.88 -2.38 -0.02 2.40 16 39 H 0.04 1.88 7.68 -2.39 -0.02 1.86 16 40 H 0.38 19.02 8.07 -92.71 -0.75 18.27 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.11 2.73 8.03 -2.39 -0.02 2.71 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 44 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 45 H 0.13 2.19 7.83 -2.39 -0.02 2.17 16 Total: -1.00 -74.88 376.21 1.98 -72.90 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.28 Total: 34.74 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.92 Total: -1.89 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.44 Total: -113.06 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.25 Total: -41.08 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -74.88 1.98 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754533697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.856 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds