Wall clock time and date at job start Tue Mar 31 2020 17:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.82355 * 2 1 4 4 C 1.51501 * 109.82694 * 239.05278 * 2 1 3 5 5 O 1.20765 * 121.01836 * 106.64469 * 4 2 1 6 6 C 1.51324 * 117.95904 * 286.62762 * 4 2 1 7 7 C 1.53234 * 108.64919 * 307.40106 * 6 4 2 8 8 C 1.52624 * 109.49939 * 56.04985 * 7 6 4 9 9 N 1.46864 * 109.53663 * 301.85433 * 8 7 6 10 10 C 1.34783 * 120.71703 * 237.05913 * 9 8 7 11 11 O 1.21591 * 119.99572 * 5.06473 * 10 9 8 12 12 N 1.34774 * 120.00065 * 184.79590 * 10 9 8 13 13 C 1.46499 * 119.99883 * 175.32026 * 12 10 9 14 14 C 1.50697 * 109.47150 * 179.97438 * 13 12 10 15 15 C 1.38325 * 119.96778 * 269.72195 * 14 13 12 16 16 C 1.38276 * 120.13943 * 179.76639 * 15 14 13 17 17 C 1.38123 * 120.06827 * 0.51037 * 16 15 14 18 18 C 1.38862 * 119.93274 * 359.74786 * 17 16 15 19 19 O 1.35745 * 120.07303 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99697 * 5.35768 * 19 18 17 21 21 H 1.07989 * 120.00024 * 354.96858 * 20 19 18 22 22 C 1.38652 * 119.99673 * 174.96677 * 20 19 18 23 23 N 1.31554 * 120.00541 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00102 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46838 * 89.99825 * 24 22 20 26 26 H 1.48496 * 109.47011 * 210.00137 * 24 22 20 27 27 H 1.48507 * 109.46881 * 330.00229 * 24 22 20 28 28 C 1.38080 * 119.96479 * 90.00176 * 14 13 12 29 29 H 1.09007 * 109.46740 * 299.12619 * 1 2 3 30 30 H 1.08997 * 109.47025 * 59.12009 * 1 2 3 31 31 H 1.08997 * 109.47349 * 179.13023 * 1 2 3 32 32 H 1.08996 * 109.60727 * 67.14809 * 6 4 2 33 33 H 1.09004 * 109.60717 * 187.48424 * 6 4 2 34 34 H 1.08991 * 109.47653 * 176.16254 * 7 6 4 35 35 H 1.08998 * 109.47659 * 296.18463 * 7 6 4 36 36 H 1.09006 * 109.39611 * 181.81909 * 8 7 6 37 37 H 1.08998 * 109.33945 * 61.86026 * 8 7 6 38 38 H 0.96999 * 120.00017 * 355.31158 * 12 10 9 39 39 H 1.09005 * 109.47097 * 299.99588 * 13 12 10 40 40 H 1.09002 * 109.47431 * 59.99936 * 13 12 10 41 41 H 1.08001 * 119.92831 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.96904 * 180.25414 * 16 15 14 43 43 H 1.08002 * 120.03495 * 179.72185 * 17 16 15 44 44 H 0.97002 * 120.00692 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.03799 * 359.95039 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0438 -0.7329 -1.2223 5 8 2.5338 -0.1318 -2.1481 6 6 1.9247 -2.2412 -1.2474 7 6 2.5502 -2.8035 0.0335 8 6 1.8786 -2.1703 1.2490 9 7 2.0293 -0.7107 1.1885 10 6 2.6171 -0.0369 2.1970 11 8 3.1115 -0.6443 3.1271 12 7 2.6616 1.3099 2.1719 13 6 3.2080 2.0462 3.3145 14 6 3.1443 3.5257 3.0356 15 6 4.2089 4.1594 2.4205 16 6 4.1522 5.5160 2.1586 17 6 3.0358 6.2446 2.5202 18 6 1.9676 5.6124 3.1427 19 8 0.8693 6.3258 3.4998 20 6 0.8309 7.6199 3.1232 21 1 1.6848 8.0657 2.6350 22 6 -0.3048 8.3782 3.3629 23 7 -1.3448 7.8353 3.9582 24 14 -0.3584 10.1710 2.8406 25 1 -0.8879 10.2677 1.4567 26 1 -1.2416 10.9290 3.7628 27 1 1.0121 10.7412 2.8872 28 6 2.0255 4.2486 3.3996 29 1 -0.3633 0.5002 0.8978 30 1 -0.3633 0.5274 -0.8820 31 1 -0.3634 -1.0275 -0.0156 32 1 0.8732 -2.5243 -1.2957 33 1 2.4499 -2.6353 -2.1174 34 1 2.4112 -3.8842 0.0617 35 1 3.6155 -2.5735 0.0490 36 1 2.3466 -2.5472 2.1585 37 1 0.8193 -2.4272 1.2507 38 1 2.3320 1.7917 1.3972 39 1 2.6239 1.8187 4.2063 40 1 4.2451 1.7513 3.4744 41 1 5.0845 3.5927 2.1405 42 1 4.9833 6.0072 1.6745 43 1 2.9940 7.3049 2.3195 44 1 -2.1396 8.3657 4.1255 45 1 1.1961 3.7540 3.8832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771929335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:26 Heat of formation + Delta-G solvation = -61.257920 kcal Electronic energy + Delta-G solvation = -28075.782096 eV Core-core repulsion = 24059.409409 eV Total energy + Delta-G solvation = -4016.372687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05998 -39.54760 -39.04905 -37.12589 -36.57710 -34.74904 -33.43634 -32.34598 -31.45181 -30.67183 -29.15764 -27.63895 -25.94204 -25.16744 -24.32740 -22.93906 -21.72708 -20.93291 -20.81029 -19.19846 -18.48033 -17.63054 -17.05100 -16.81846 -15.92516 -15.79704 -15.48713 -15.17839 -15.06176 -14.94442 -14.59072 -14.51024 -14.31203 -13.94845 -13.69202 -13.49846 -13.36260 -12.94828 -12.73181 -12.66025 -12.50031 -12.42591 -12.18031 -11.89197 -11.70432 -11.55753 -11.42931 -11.35324 -10.95242 -10.83244 -10.71292 -10.48617 -10.44711 -9.96413 -9.42958 -9.17450 -8.90915 -8.71095 -8.27197 -7.34515 -6.50902 -4.10387 1.41866 1.83429 2.25024 2.56177 3.07018 3.09108 3.10045 3.14737 3.52597 3.77134 3.91429 4.18220 4.38568 4.41230 4.50757 4.67440 4.78665 4.92041 4.92585 5.04805 5.10630 5.14144 5.25698 5.27982 5.35100 5.43162 5.51845 5.59611 5.66146 5.74804 5.82025 5.83812 5.87964 6.05368 6.14019 6.23776 6.47834 6.53909 6.67194 6.80161 6.98036 7.01008 7.17327 7.26338 7.33992 7.68906 7.81608 7.93324 8.47526 8.94605 9.63026 10.66836 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002563 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.963420 B =10921.371231 C =11425.416788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.093 3.907 3 H 0.109 0.891 4 C 0.359 3.641 5 O -0.442 6.442 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.122 3.878 9 N -0.624 5.624 10 C 0.711 3.289 11 O -0.587 6.587 12 N -0.735 5.735 13 C 0.185 3.815 14 C -0.075 4.075 15 C -0.194 4.194 16 C -0.076 4.076 17 C -0.225 4.225 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.170 4.170 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -18.315 -8.720 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.013 4.013 3 H 0.127 0.873 4 C 0.232 3.768 5 O -0.312 6.312 6 C -0.207 4.207 7 C -0.167 4.167 8 C -0.001 4.001 9 N -0.364 5.364 10 C 0.413 3.587 11 O -0.465 6.465 12 N -0.392 5.392 13 C 0.062 3.938 14 C -0.075 4.075 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.190 4.190 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.559 -18.396 -8.279 20.682 hybrid contribution -0.225 1.301 -0.702 1.496 sum 4.334 -17.094 -8.981 19.791 Atomic orbital electron populations 1.22097 0.91985 1.03503 1.04259 1.22022 0.96903 0.97508 0.84841 0.87281 1.25133 0.73298 0.92242 0.86156 1.90461 1.32438 1.71536 1.36801 1.22313 1.04044 0.93680 1.00632 1.21845 1.01046 1.01042 0.92805 1.21406 1.00912 0.78045 0.99719 1.47353 1.63370 1.07401 1.18321 1.15787 0.78775 0.81990 0.82151 1.90914 1.51843 1.67802 1.35899 1.45475 1.67447 1.04269 1.21980 1.20040 0.99182 0.86917 0.87620 1.19273 0.94515 0.93400 1.00343 1.20495 0.99016 0.94888 1.06930 1.20751 0.96858 0.93806 0.98003 1.21252 0.95077 1.01038 1.07097 1.19322 0.87808 0.91140 0.92101 1.83982 1.34359 1.23529 1.66073 1.21323 1.02073 0.83244 1.40293 0.89040 1.25288 0.94311 1.00288 0.96535 1.70031 1.04132 1.37008 1.38411 0.85716 0.78794 0.80335 0.78627 1.19840 1.20210 1.19170 1.20082 0.99143 0.91699 1.08036 0.90205 0.90601 0.91276 0.87946 0.88989 0.89151 0.90900 0.87853 0.90984 0.76559 0.90895 0.90947 0.87489 0.87263 0.85447 0.91947 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.31 37.16 0.35 -0.84 16 2 C 0.09 0.86 3.09 -68.31 -0.21 0.64 16 3 H 0.11 1.10 5.82 -51.93 -0.30 0.80 16 4 C 0.36 3.40 6.18 -28.33 -0.18 3.23 16 5 O -0.44 -5.76 17.90 5.99 0.11 -5.65 16 6 C -0.17 -1.03 6.01 -27.46 -0.17 -1.20 16 7 C -0.13 -0.77 6.07 -26.80 -0.16 -0.93 16 8 C 0.12 0.95 6.05 -4.04 -0.02 0.92 16 9 N -0.62 -6.46 2.67 -172.07 -0.46 -6.92 16 10 C 0.71 9.83 8.30 -86.92 -0.72 9.11 16 11 O -0.59 -9.93 15.77 5.29 0.08 -9.85 16 12 N -0.74 -9.94 5.45 -66.41 -0.36 -10.30 16 13 C 0.19 2.73 5.80 -5.20 -0.03 2.70 16 14 C -0.07 -1.25 5.25 -104.65 -0.55 -1.80 16 15 C -0.19 -3.19 9.70 -39.54 -0.38 -3.57 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 17 C -0.23 -4.69 9.17 -39.39 -0.36 -5.05 16 18 C 0.15 3.47 6.65 -39.10 -0.26 3.21 16 19 O -0.18 -4.86 9.76 0.04 0.00 -4.86 16 20 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 21 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 24 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 28 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.39 7.11 -51.93 -0.37 0.02 16 32 H 0.10 0.41 7.87 -51.93 -0.41 0.00 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.96 6.98 -51.93 -0.36 0.59 16 37 H 0.07 0.42 7.53 -51.93 -0.39 0.03 16 38 H 0.40 5.01 6.02 -40.82 -0.25 4.76 16 39 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -33.18 373.88 -8.54 -41.72 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.01 Total: 7.64 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.28 Total: -8.48 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.06 Total: -41.20 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.19 Total: -20.36 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.18 -8.54 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771929335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.537 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds