Wall clock time and date at job start Tue Mar 31 2020 17:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.82355 * 2 1 4 4 C 1.51501 * 109.82694 * 239.05278 * 2 1 3 5 5 O 1.20765 * 121.01836 * 106.64469 * 4 2 1 6 6 C 1.51324 * 117.95904 * 286.62762 * 4 2 1 7 7 C 1.53234 * 108.64919 * 307.40106 * 6 4 2 8 8 C 1.52624 * 109.49939 * 56.04985 * 7 6 4 9 9 N 1.46864 * 109.53663 * 301.85433 * 8 7 6 10 10 C 1.34783 * 120.71703 * 237.05913 * 9 8 7 11 11 O 1.21591 * 119.99572 * 5.06473 * 10 9 8 12 12 N 1.34774 * 120.00065 * 184.79590 * 10 9 8 13 13 C 1.46499 * 119.99883 * 175.32026 * 12 10 9 14 14 C 1.50697 * 109.47150 * 179.97438 * 13 12 10 15 15 C 1.38325 * 119.96778 * 269.72195 * 14 13 12 16 16 C 1.38276 * 120.13943 * 179.76639 * 15 14 13 17 17 C 1.38123 * 120.06827 * 0.51037 * 16 15 14 18 18 C 1.38862 * 119.93274 * 359.74786 * 17 16 15 19 19 O 1.35745 * 120.07303 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99697 * 5.35768 * 19 18 17 21 21 H 1.07989 * 120.00024 * 354.96858 * 20 19 18 22 22 C 1.38652 * 119.99673 * 174.96677 * 20 19 18 23 23 N 1.31554 * 120.00541 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00102 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46838 * 89.99825 * 24 22 20 26 26 H 1.48496 * 109.47011 * 210.00137 * 24 22 20 27 27 H 1.48507 * 109.46881 * 330.00229 * 24 22 20 28 28 C 1.38080 * 119.96479 * 90.00176 * 14 13 12 29 29 H 1.09007 * 109.46740 * 299.12619 * 1 2 3 30 30 H 1.08997 * 109.47025 * 59.12009 * 1 2 3 31 31 H 1.08997 * 109.47349 * 179.13023 * 1 2 3 32 32 H 1.08996 * 109.60727 * 67.14809 * 6 4 2 33 33 H 1.09004 * 109.60717 * 187.48424 * 6 4 2 34 34 H 1.08991 * 109.47653 * 176.16254 * 7 6 4 35 35 H 1.08998 * 109.47659 * 296.18463 * 7 6 4 36 36 H 1.09006 * 109.39611 * 181.81909 * 8 7 6 37 37 H 1.08998 * 109.33945 * 61.86026 * 8 7 6 38 38 H 0.96999 * 120.00017 * 355.31158 * 12 10 9 39 39 H 1.09005 * 109.47097 * 299.99588 * 13 12 10 40 40 H 1.09002 * 109.47431 * 59.99936 * 13 12 10 41 41 H 1.08001 * 119.92831 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.96904 * 180.25414 * 16 15 14 43 43 H 1.08002 * 120.03495 * 179.72185 * 17 16 15 44 44 H 0.97002 * 120.00692 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.03799 * 359.95039 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0438 -0.7329 -1.2223 5 8 2.5338 -0.1318 -2.1481 6 6 1.9247 -2.2412 -1.2474 7 6 2.5502 -2.8035 0.0335 8 6 1.8786 -2.1703 1.2490 9 7 2.0293 -0.7107 1.1885 10 6 2.6171 -0.0369 2.1970 11 8 3.1115 -0.6443 3.1271 12 7 2.6616 1.3099 2.1719 13 6 3.2080 2.0462 3.3145 14 6 3.1443 3.5257 3.0356 15 6 4.2089 4.1594 2.4205 16 6 4.1522 5.5160 2.1586 17 6 3.0358 6.2446 2.5202 18 6 1.9676 5.6124 3.1427 19 8 0.8693 6.3258 3.4998 20 6 0.8309 7.6199 3.1232 21 1 1.6848 8.0657 2.6350 22 6 -0.3048 8.3782 3.3629 23 7 -1.3448 7.8353 3.9582 24 14 -0.3584 10.1710 2.8406 25 1 -0.8879 10.2677 1.4567 26 1 -1.2416 10.9290 3.7628 27 1 1.0121 10.7412 2.8872 28 6 2.0255 4.2486 3.3996 29 1 -0.3633 0.5002 0.8978 30 1 -0.3633 0.5274 -0.8820 31 1 -0.3634 -1.0275 -0.0156 32 1 0.8732 -2.5243 -1.2957 33 1 2.4499 -2.6353 -2.1174 34 1 2.4112 -3.8842 0.0617 35 1 3.6155 -2.5735 0.0490 36 1 2.3466 -2.5472 2.1585 37 1 0.8193 -2.4272 1.2507 38 1 2.3320 1.7917 1.3972 39 1 2.6239 1.8187 4.2063 40 1 4.2451 1.7513 3.4744 41 1 5.0845 3.5927 2.1405 42 1 4.9833 6.0072 1.6745 43 1 2.9940 7.3049 2.3195 44 1 -2.1396 8.3657 4.1255 45 1 1.1961 3.7540 3.8832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771929335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:25 Heat of formation + Delta-G solvation = -82.597762 kcal Electronic energy + Delta-G solvation = -28076.707461 eV Core-core repulsion = 24059.409409 eV Total energy + Delta-G solvation = -4017.298052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94797 -40.88830 -40.33775 -38.58121 -37.65286 -35.95907 -34.34643 -34.12761 -32.31290 -31.96514 -30.76500 -28.42771 -27.50146 -26.70372 -25.12763 -23.65791 -23.26663 -22.44190 -21.83320 -20.25894 -19.52203 -19.14172 -18.64580 -17.77181 -16.99898 -16.69501 -16.61576 -16.48987 -16.17254 -16.11430 -15.88445 -15.74586 -15.54517 -15.42604 -14.99218 -14.50810 -14.44215 -14.15664 -13.93634 -13.67931 -13.56980 -13.37269 -13.31204 -13.08389 -13.00842 -12.59872 -12.56310 -12.35571 -12.29468 -12.14085 -12.11653 -11.98274 -11.53856 -11.22548 -10.82172 -10.78559 -10.29294 -9.79556 -9.57895 -9.05245 -8.47579 -6.16031 0.33714 0.67080 0.68788 1.35569 1.43778 1.52484 1.60249 2.00377 2.16957 2.66800 2.82932 2.91209 3.18049 3.35981 3.49736 3.77559 3.83964 3.88108 4.03203 4.07570 4.19572 4.29321 4.34773 4.40340 4.49361 4.50663 4.63203 4.67207 4.69086 4.71895 4.82466 4.89209 4.99500 5.04865 5.10885 5.11896 5.24003 5.27106 5.31702 5.40636 5.60077 5.68592 5.69514 5.73913 6.00915 6.14135 6.26385 6.76635 6.97292 7.40209 7.76820 8.75379 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002563 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.963420 B =10921.371231 C =11425.416788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 H 0.095 0.905 4 C 0.362 3.638 5 O -0.484 6.484 6 C -0.162 4.162 7 C -0.119 4.119 8 C 0.114 3.886 9 N -0.618 5.618 10 C 0.708 3.292 11 O -0.620 6.620 12 N -0.735 5.735 13 C 0.193 3.807 14 C -0.060 4.060 15 C -0.171 4.171 16 C -0.070 4.070 17 C -0.234 4.234 18 C 0.114 3.886 19 O -0.230 6.230 20 C -0.413 4.413 21 H 0.103 0.897 22 C -0.021 4.021 23 N -0.920 5.920 24 Si 1.017 2.983 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.253 1.253 28 C -0.177 4.177 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -19.975 -10.548 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.016 4.016 3 H 0.113 0.887 4 C 0.238 3.762 5 O -0.357 6.357 6 C -0.199 4.199 7 C -0.158 4.158 8 C -0.007 4.007 9 N -0.357 5.357 10 C 0.409 3.591 11 O -0.501 6.501 12 N -0.391 5.391 13 C 0.069 3.931 14 C -0.061 4.061 15 C -0.190 4.190 16 C -0.088 4.088 17 C -0.253 4.253 18 C 0.063 3.937 19 O -0.137 6.137 20 C -0.489 4.489 21 H 0.120 0.880 22 C -0.219 4.219 23 N -0.558 5.558 24 Si 0.836 3.164 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.176 1.176 28 C -0.197 4.197 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.240 0.760 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.098 -20.110 -10.143 23.334 hybrid contribution -0.470 1.526 -0.181 1.607 sum 5.628 -18.584 -10.324 21.992 Atomic orbital electron populations 1.22085 0.90320 1.05115 1.03887 1.22119 0.98146 0.96839 0.84527 0.88726 1.25584 0.71628 0.93937 0.85088 1.90456 1.34420 1.72676 1.38187 1.22364 1.06154 0.90543 1.00864 1.21812 0.99583 1.02776 0.91590 1.21693 1.02748 0.76266 1.00027 1.47420 1.62200 1.08489 1.17582 1.15914 0.78820 0.81823 0.82522 1.90889 1.53429 1.68367 1.37436 1.45345 1.67559 1.04479 1.21730 1.19910 0.99854 0.85420 0.87922 1.19450 0.93392 0.94387 0.98881 1.20985 0.99383 0.94706 1.03897 1.21146 0.96533 0.94152 0.96970 1.21379 0.95650 1.01138 1.07180 1.19837 0.87848 0.92215 0.93753 1.83949 1.36800 1.24112 1.68806 1.21813 1.02822 0.83734 1.40541 0.87995 1.26551 0.93623 1.05296 0.96417 1.70177 1.05186 1.39171 1.41237 0.84613 0.79429 0.73952 0.78416 1.18815 1.19721 1.17639 1.20211 1.00242 0.90925 1.08349 0.91432 0.90088 0.88728 0.84776 0.88342 0.85829 0.92742 0.89411 0.88218 0.76035 0.91512 0.89784 0.83826 0.83485 0.86099 0.91843 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.31 71.98 0.67 -1.36 16 2 C 0.09 1.52 3.09 44.37 0.14 1.66 16 3 H 0.09 1.88 5.82 -2.39 -0.01 1.86 16 4 C 0.36 6.22 6.18 29.56 0.18 6.41 16 5 O -0.48 -12.23 17.90 -1.47 -0.03 -12.26 16 6 C -0.16 -1.43 6.01 30.12 0.18 -1.25 16 7 C -0.12 -1.05 6.07 30.55 0.19 -0.86 16 8 C 0.11 1.50 6.05 86.19 0.52 2.02 16 9 N -0.62 -11.91 2.67 -816.56 -2.18 -14.09 16 10 C 0.71 18.98 8.30 179.05 1.49 20.47 16 11 O -0.62 -20.67 15.77 -4.00 -0.06 -20.73 16 12 N -0.73 -19.24 5.45 -482.29 -2.63 -21.86 16 13 C 0.19 5.44 5.80 85.63 0.50 5.94 16 14 C -0.06 -1.96 5.25 -19.88 -0.10 -2.06 16 15 C -0.17 -5.07 9.70 22.30 0.22 -4.85 16 16 C -0.07 -2.27 10.04 22.25 0.22 -2.04 16 17 C -0.23 -9.74 9.17 22.39 0.21 -9.53 16 18 C 0.11 5.46 6.65 22.58 0.15 5.61 16 19 O -0.23 -13.52 9.76 -22.76 -0.22 -13.74 16 20 C -0.41 -23.53 9.49 67.92 0.64 -22.89 16 21 H 0.10 5.30 5.20 -2.92 -0.02 5.29 16 22 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 23 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 24 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 28 C -0.18 -7.26 9.65 22.39 0.22 -7.04 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.74 7.11 -2.39 -0.02 0.72 16 32 H 0.13 0.41 7.87 -2.39 -0.02 0.39 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 1.50 6.98 -2.38 -0.02 1.48 16 37 H 0.10 0.79 7.53 -2.39 -0.02 0.77 16 38 H 0.40 9.87 6.02 -92.71 -0.56 9.31 16 39 H 0.07 2.00 8.09 -2.38 -0.02 1.98 16 40 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -77.92 373.88 3.55 -74.37 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.47 Total: 30.06 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.88 Total: -10.51 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -4.51 Total: -91.34 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.31 Total: -46.72 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -77.92 3.55 -74.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771929335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.226 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds