Wall clock time and date at job start Tue Mar 31 2020 18:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 120.00060 * 2 1 4 4 N 1.34772 * 119.99588 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63683 * 359.97438 * 4 2 1 6 6 C 1.53190 * 108.77832 * 126.40985 * 5 4 2 7 7 C 1.53043 * 109.33404 * 54.62262 * 6 5 4 8 8 C 1.53034 * 109.54268 * 298.67977 * 7 6 5 9 9 H 1.09004 * 109.50019 * 301.35610 * 8 7 6 10 10 C 1.50693 * 109.50010 * 181.28339 * 8 7 6 11 11 O 1.21289 * 120.00084 * 0.07251 * 10 8 7 12 12 N 1.34779 * 120.00010 * 180.02562 * 10 8 7 13 13 C 1.39931 * 119.99822 * 174.55108 * 12 10 8 14 14 C 1.38956 * 120.03592 * 325.25731 * 13 12 10 15 15 C 1.38160 * 120.06803 * 180.02562 * 14 13 12 16 16 C 1.38168 * 120.13667 * 0.02562 * 15 14 13 17 17 C 1.38907 * 120.07209 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.03442 * 180.02562 * 17 16 15 19 19 C 1.34838 * 116.99980 * 185.56972 * 18 17 16 20 20 H 1.07999 * 119.99907 * 5.36094 * 19 18 17 21 21 C 1.38649 * 119.99710 * 185.35464 * 19 18 17 22 22 N 1.31553 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47047 * 59.99946 * 23 21 19 25 25 H 1.48494 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46877 * 300.00020 * 23 21 19 27 27 C 1.38713 * 120.03166 * 145.28059 * 13 12 10 28 28 C 1.46934 * 120.62802 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47086 * 240.00308 * 1 2 3 30 30 H 1.09008 * 109.46917 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46820 * 119.99759 * 1 2 3 32 32 H 1.08997 * 109.58681 * 246.20442 * 5 4 2 33 33 H 1.09006 * 109.58130 * 6.48433 * 5 4 2 34 34 H 1.08997 * 109.50056 * 174.58840 * 6 5 4 35 35 H 1.09004 * 109.49781 * 294.65851 * 6 5 4 36 36 H 1.09002 * 109.48351 * 178.64589 * 7 6 5 37 37 H 1.08998 * 109.43480 * 58.69387 * 7 6 5 38 38 H 0.96996 * 120.00506 * 354.54887 * 12 10 8 39 39 H 1.08002 * 119.96908 * 0.04577 * 14 13 12 40 40 H 1.07993 * 119.93374 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.96493 * 180.02562 * 16 15 14 42 42 H 0.97000 * 120.00404 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.07327 * 359.69935 * 27 13 12 44 44 H 1.09001 * 109.58213 * 113.79848 * 28 4 2 45 45 H 1.08993 * 109.58610 * 353.37619 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4603 -2.4477 0.0017 6 6 1.9682 -3.3004 -1.1652 7 6 3.4897 -3.4353 -1.0695 8 6 4.1335 -2.0504 -1.1664 9 1 3.8499 -1.5824 -2.1091 10 6 5.6329 -2.1872 -1.1037 11 8 6.1377 -3.2846 -0.9937 12 7 6.4131 -1.0902 -1.1707 13 6 7.7971 -1.2044 -0.9983 14 6 8.3125 -2.1413 -0.1110 15 6 9.6788 -2.2543 0.0602 16 6 10.5368 -1.4362 -0.6496 17 6 10.0278 -0.4977 -1.5381 18 8 10.8715 0.3054 -2.2355 19 6 10.3119 1.2707 -2.9926 20 1 9.2449 1.4338 -2.9577 21 6 11.1065 2.0538 -3.8158 22 7 12.4061 1.8548 -3.8587 23 14 10.3314 3.3916 -4.8642 24 1 9.6466 4.3741 -3.9862 25 1 11.3878 4.0808 -5.6478 26 1 9.3436 2.7837 -5.7915 27 6 8.6558 -0.3821 -1.7128 28 6 3.6501 -1.1834 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0278 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6425 -2.9687 0.9415 33 1 0.3918 -2.2657 -0.1140 34 1 1.5117 -4.2891 -1.1191 35 1 1.7041 -2.8212 -2.1080 36 1 3.8512 -4.0616 -1.8851 37 1 3.7540 -3.8928 -0.1161 38 1 6.0154 -0.2216 -1.3385 39 1 7.6444 -2.7821 0.4453 40 1 10.0770 -2.9829 0.7507 41 1 11.6044 -1.5271 -0.5140 42 1 12.9621 2.4029 -4.4343 43 1 8.2579 0.3438 -2.4064 44 1 4.0104 -1.6016 0.9410 45 1 4.0267 -0.1675 -0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:12 Heat of formation + Delta-G solvation = -73.868920 kcal Electronic energy + Delta-G solvation = -28077.426847 eV Core-core repulsion = 24060.507306 eV Total energy + Delta-G solvation = -4016.919541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93268 -39.94023 -38.74319 -37.47123 -36.37965 -34.30658 -33.43785 -32.26753 -31.98219 -30.06147 -29.26344 -28.46514 -25.64026 -25.32498 -24.51464 -22.53394 -21.82705 -21.13347 -19.89815 -19.41969 -18.00012 -17.87884 -17.36345 -16.75568 -16.44167 -15.85447 -15.58362 -15.30127 -15.03428 -14.58617 -14.54090 -14.25031 -13.98888 -13.85184 -13.65119 -13.60218 -13.52316 -13.08700 -12.99895 -12.74147 -12.53627 -12.40035 -11.87924 -11.74390 -11.55673 -11.38289 -11.34406 -11.13135 -11.03396 -10.93960 -10.80771 -10.46726 -10.23095 -9.89425 -9.64220 -9.41340 -9.07381 -8.80442 -7.74907 -7.16844 -6.44494 -4.04341 1.91028 2.25658 2.35696 2.53318 2.81499 3.13453 3.14515 3.17047 3.20750 3.96840 4.09633 4.27460 4.42466 4.46896 4.53149 4.58792 4.72588 4.79264 4.87501 4.92888 5.00705 5.10130 5.14985 5.27216 5.27788 5.36704 5.40002 5.47524 5.56803 5.70664 5.78842 5.94978 5.97764 6.01965 6.06471 6.23717 6.27171 6.62296 6.95229 6.97459 6.97961 7.11517 7.29374 7.41656 7.65681 7.78980 7.79773 7.99440 8.25201 9.00812 9.70612 10.73420 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.002847 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.037183 B = 9830.839293 C =11322.344846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.542 6.542 4 N -0.613 5.613 5 C 0.104 3.896 6 C -0.136 4.136 7 C -0.100 4.100 8 C -0.121 4.121 9 H 0.102 0.898 10 C 0.518 3.482 11 O -0.515 6.515 12 N -0.668 5.668 13 C 0.179 3.821 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.200 4.200 17 C 0.168 3.832 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.090 0.910 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.939 3.061 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.254 4.254 28 C 0.120 3.880 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.407 0.593 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.168 -8.401 7.008 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.419 6.419 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.174 4.174 7 C -0.138 4.138 8 C -0.143 4.143 9 H 0.120 0.880 10 C 0.304 3.696 11 O -0.390 6.390 12 N -0.313 5.313 13 C 0.087 3.913 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.219 4.219 17 C 0.113 3.887 18 O -0.078 6.078 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.276 4.276 28 C -0.003 4.003 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.243 0.757 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.085 -8.506 6.957 26.474 hybrid contribution -0.636 1.031 -0.794 1.449 sum -24.722 -7.475 6.163 26.552 Atomic orbital electron populations 1.21946 0.91599 1.05591 1.04113 1.20873 0.90734 0.82922 0.75438 1.90753 1.70692 1.30954 1.49464 1.48135 1.06500 1.06317 1.73839 1.21847 0.96756 0.83887 0.99375 1.21957 0.96248 1.00491 0.98680 1.21344 0.93710 0.94578 1.04209 1.21728 0.91869 0.99343 1.01379 0.87987 1.20415 0.88538 0.84333 0.76341 1.90732 1.75259 1.25714 1.47276 1.43572 1.06187 1.10647 1.70866 1.17402 0.81075 0.97453 0.95408 1.20478 0.95277 1.03492 1.03296 1.20518 0.92494 0.97366 0.97835 1.20251 0.99808 1.00237 1.01648 1.19090 0.88645 0.89936 0.90981 1.84021 1.32306 1.38998 1.52523 1.21228 0.93889 1.09708 1.22075 0.89295 1.25269 0.95390 0.98620 0.97122 1.70023 1.03804 1.38774 1.37104 0.85806 0.78519 0.79821 0.79447 1.19460 1.20244 1.19561 1.20837 0.93071 1.07242 1.06451 1.21520 0.79815 1.01567 0.97412 0.89341 0.88898 0.89299 0.90888 0.89296 0.89939 0.91218 0.90374 0.90681 0.75732 0.86565 0.86612 0.86357 0.91948 0.85243 0.90615 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 8.67 36.01 0.31 -0.55 16 2 C 0.51 4.84 7.81 -10.99 -0.09 4.75 16 3 O -0.54 -7.70 16.50 5.56 0.09 -7.61 16 4 N -0.61 -4.92 2.97 -172.73 -0.51 -5.44 16 5 C 0.10 0.50 6.34 -3.71 -0.02 0.48 16 6 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 7 C -0.10 -0.84 4.46 -26.69 -0.12 -0.96 16 8 C -0.12 -1.20 2.67 -91.63 -0.25 -1.44 16 9 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.52 7.33 6.88 -10.99 -0.08 7.26 16 11 O -0.52 -9.02 13.77 5.55 0.08 -8.94 16 12 N -0.67 -10.15 5.22 -9.88 -0.05 -10.20 16 13 C 0.18 3.46 6.25 -83.72 -0.52 2.94 16 14 C -0.20 -3.92 8.65 -39.34 -0.34 -4.26 16 15 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 16 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 17 C 0.17 4.11 6.64 -39.13 -0.26 3.85 16 18 O -0.18 -5.03 9.76 0.01 0.00 -5.03 16 19 C -0.39 -11.00 9.44 30.88 0.29 -10.70 16 20 H 0.09 2.29 5.29 -52.49 -0.28 2.01 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 23 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 C -0.25 -5.59 9.05 -39.21 -0.35 -5.95 16 28 C 0.12 1.15 5.60 -3.68 -0.02 1.13 16 29 H 0.09 0.27 7.94 -51.93 -0.41 -0.15 16 30 H 0.09 0.50 8.12 -51.92 -0.42 0.08 16 31 H 0.09 0.27 7.70 -51.93 -0.40 -0.13 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.22 5.93 -51.93 -0.31 -0.09 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 38 H 0.41 5.20 8.56 -40.82 -0.35 4.85 16 39 H 0.12 2.14 6.52 -52.49 -0.34 1.80 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.10 6.76 -51.93 -0.35 0.75 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -35.70 370.67 -7.67 -43.37 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.10 Total: 6.94 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.49 Total: -9.63 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.19 Total: -40.28 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.17 Total: -21.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.70 -7.67 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds