Wall clock time and date at job start Tue Mar 31 2020 18:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 120.00060 * 2 1 4 4 N 1.34772 * 119.99588 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63683 * 359.97438 * 4 2 1 6 6 C 1.53190 * 108.77832 * 126.40985 * 5 4 2 7 7 C 1.53043 * 109.33404 * 54.62262 * 6 5 4 8 8 C 1.53034 * 109.54268 * 298.67977 * 7 6 5 9 9 H 1.09004 * 109.50019 * 301.35610 * 8 7 6 10 10 C 1.50693 * 109.50010 * 181.28339 * 8 7 6 11 11 O 1.21289 * 120.00084 * 0.07251 * 10 8 7 12 12 N 1.34779 * 120.00010 * 180.02562 * 10 8 7 13 13 C 1.39931 * 119.99822 * 174.55108 * 12 10 8 14 14 C 1.38956 * 120.03592 * 325.25731 * 13 12 10 15 15 C 1.38160 * 120.06803 * 180.02562 * 14 13 12 16 16 C 1.38168 * 120.13667 * 0.02562 * 15 14 13 17 17 C 1.38907 * 120.07209 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.03442 * 180.02562 * 17 16 15 19 19 C 1.34838 * 116.99980 * 185.56972 * 18 17 16 20 20 H 1.07999 * 119.99907 * 5.36094 * 19 18 17 21 21 C 1.38649 * 119.99710 * 185.35464 * 19 18 17 22 22 N 1.31553 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99790 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47047 * 59.99946 * 23 21 19 25 25 H 1.48494 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46877 * 300.00020 * 23 21 19 27 27 C 1.38713 * 120.03166 * 145.28059 * 13 12 10 28 28 C 1.46934 * 120.62802 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47086 * 240.00308 * 1 2 3 30 30 H 1.09008 * 109.46917 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46820 * 119.99759 * 1 2 3 32 32 H 1.08997 * 109.58681 * 246.20442 * 5 4 2 33 33 H 1.09006 * 109.58130 * 6.48433 * 5 4 2 34 34 H 1.08997 * 109.50056 * 174.58840 * 6 5 4 35 35 H 1.09004 * 109.49781 * 294.65851 * 6 5 4 36 36 H 1.09002 * 109.48351 * 178.64589 * 7 6 5 37 37 H 1.08998 * 109.43480 * 58.69387 * 7 6 5 38 38 H 0.96996 * 120.00506 * 354.54887 * 12 10 8 39 39 H 1.08002 * 119.96908 * 0.04577 * 14 13 12 40 40 H 1.07993 * 119.93374 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.96493 * 180.02562 * 16 15 14 42 42 H 0.97000 * 120.00404 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.07327 * 359.69935 * 27 13 12 44 44 H 1.09001 * 109.58213 * 113.79848 * 28 4 2 45 45 H 1.08993 * 109.58610 * 353.37619 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4603 -2.4477 0.0017 6 6 1.9682 -3.3004 -1.1652 7 6 3.4897 -3.4353 -1.0695 8 6 4.1335 -2.0504 -1.1664 9 1 3.8499 -1.5824 -2.1091 10 6 5.6329 -2.1872 -1.1037 11 8 6.1377 -3.2846 -0.9937 12 7 6.4131 -1.0902 -1.1707 13 6 7.7971 -1.2044 -0.9983 14 6 8.3125 -2.1413 -0.1110 15 6 9.6788 -2.2543 0.0602 16 6 10.5368 -1.4362 -0.6496 17 6 10.0278 -0.4977 -1.5381 18 8 10.8715 0.3054 -2.2355 19 6 10.3119 1.2707 -2.9926 20 1 9.2449 1.4338 -2.9577 21 6 11.1065 2.0538 -3.8158 22 7 12.4061 1.8548 -3.8587 23 14 10.3314 3.3916 -4.8642 24 1 9.6466 4.3741 -3.9862 25 1 11.3878 4.0808 -5.6478 26 1 9.3436 2.7837 -5.7915 27 6 8.6558 -0.3821 -1.7128 28 6 3.6501 -1.1834 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0278 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6425 -2.9687 0.9415 33 1 0.3918 -2.2657 -0.1140 34 1 1.5117 -4.2891 -1.1191 35 1 1.7041 -2.8212 -2.1080 36 1 3.8512 -4.0616 -1.8851 37 1 3.7540 -3.8928 -0.1161 38 1 6.0154 -0.2216 -1.3385 39 1 7.6444 -2.7821 0.4453 40 1 10.0770 -2.9829 0.7507 41 1 11.6044 -1.5271 -0.5140 42 1 12.9621 2.4029 -4.4343 43 1 8.2579 0.3438 -2.4064 44 1 4.0104 -1.6016 0.9410 45 1 4.0267 -0.1675 -0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:11 Heat of formation + Delta-G solvation = -98.425215 kcal Electronic energy + Delta-G solvation = -28078.491688 eV Core-core repulsion = 24060.507306 eV Total energy + Delta-G solvation = -4017.984382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.96646 -41.02974 -40.33638 -38.52282 -37.85358 -35.74866 -34.31601 -34.14959 -32.67325 -31.04329 -30.59257 -29.95051 -27.35704 -26.24115 -25.42772 -23.61022 -23.51581 -22.18546 -21.20282 -20.04329 -19.79896 -19.34258 -18.42351 -17.80559 -17.24575 -17.20332 -16.81798 -16.50032 -16.33066 -15.98758 -15.84182 -15.56069 -15.27982 -15.13842 -14.90190 -14.60278 -14.35530 -14.19951 -14.12015 -13.68792 -13.56707 -13.31309 -13.17913 -13.01133 -12.82745 -12.66738 -12.55694 -12.43785 -12.16803 -11.99348 -11.92203 -11.68070 -11.51431 -11.33167 -11.03329 -10.80858 -10.72777 -9.76018 -9.40479 -8.92091 -8.48933 -6.17870 0.34094 0.65783 1.33658 1.40995 1.46822 1.49677 1.61794 1.85535 2.08610 2.16052 2.80261 3.13472 3.44716 3.46658 3.49165 3.70807 3.82543 4.01457 4.06562 4.14292 4.17441 4.28825 4.40648 4.41067 4.50722 4.57885 4.60707 4.64249 4.68398 4.70862 4.76998 4.88954 4.99038 5.00575 5.07736 5.14294 5.18566 5.34337 5.37123 5.42939 5.44729 5.62485 5.63642 5.98898 6.12306 6.35671 6.38496 6.95207 7.00159 7.12753 7.74166 8.73829 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.002847 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.037183 B = 9830.839293 C =11322.344846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.609 5.609 5 C 0.099 3.901 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.106 4.106 9 H 0.111 0.889 10 C 0.519 3.481 11 O -0.546 6.546 12 N -0.665 5.665 13 C 0.185 3.815 14 C -0.197 4.197 15 C -0.050 4.050 16 C -0.213 4.213 17 C 0.134 3.866 18 O -0.225 6.225 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.918 5.918 23 Si 1.016 2.984 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.258 1.258 27 C -0.262 4.262 28 C 0.122 3.878 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.419 0.581 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.381 -9.730 7.590 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.342 5.342 5 C -0.022 4.022 6 C -0.165 4.165 7 C -0.138 4.138 8 C -0.128 4.128 9 H 0.129 0.871 10 C 0.307 3.693 11 O -0.423 6.423 12 N -0.310 5.310 13 C 0.091 3.909 14 C -0.218 4.218 15 C -0.069 4.069 16 C -0.233 4.233 17 C 0.082 3.918 18 O -0.131 6.131 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.556 5.556 23 Si 0.835 3.165 24 H -0.181 1.181 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.283 4.283 28 C -0.002 4.002 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.256 0.744 39 H 0.150 0.850 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.377 -9.896 7.571 30.992 hybrid contribution 0.542 1.185 -0.780 1.519 sum -27.835 -8.711 6.791 29.946 Atomic orbital electron populations 1.21980 0.87768 1.06074 1.06600 1.21763 0.92561 0.82222 0.74086 1.90729 1.72132 1.33088 1.52317 1.48256 1.05683 1.07474 1.72829 1.22166 0.98216 0.82105 0.99706 1.21941 0.93513 1.02025 0.99053 1.21378 0.96120 0.92870 1.03439 1.21692 0.88309 1.00845 1.01962 0.87067 1.21201 0.90128 0.83254 0.74686 1.90711 1.76207 1.26787 1.48546 1.43642 1.04645 1.11942 1.70803 1.17479 0.82836 0.96321 0.94308 1.20821 0.95740 1.02805 1.02385 1.20938 0.92080 0.96758 0.97097 1.20500 1.00620 1.00375 1.01766 1.19629 0.89639 0.90756 0.91738 1.83983 1.34067 1.40611 1.54447 1.21742 0.94675 1.10303 1.22390 0.88227 1.26562 0.95861 1.01106 0.98260 1.70168 1.05646 1.40838 1.38964 0.84683 0.77816 0.76407 0.77549 1.18138 1.19512 1.18241 1.20862 0.92635 1.07865 1.06975 1.21349 0.81491 1.00288 0.97100 0.86656 0.89616 0.86622 0.89834 0.85950 0.87528 0.90885 0.91587 0.91214 0.74365 0.85033 0.82567 0.86115 0.91741 0.85663 0.90633 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 8.67 71.24 0.62 -0.44 16 2 C 0.50 8.53 7.81 87.66 0.68 9.22 16 3 O -0.60 -17.05 16.50 -3.03 -0.05 -17.10 16 4 N -0.61 -8.22 2.97 -818.79 -2.43 -10.66 16 5 C 0.10 0.52 6.34 86.36 0.55 1.07 16 6 C -0.13 -0.83 6.08 30.67 0.19 -0.64 16 7 C -0.10 -1.44 4.46 30.62 0.14 -1.30 16 8 C -0.11 -1.92 2.67 -11.45 -0.03 -1.95 16 9 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 10 C 0.52 14.12 6.88 87.65 0.60 14.72 16 11 O -0.55 -18.41 13.77 -3.06 -0.04 -18.45 16 12 N -0.66 -19.81 5.22 -303.56 -1.58 -21.39 16 13 C 0.18 7.06 6.25 38.13 0.24 7.30 16 14 C -0.20 -7.25 8.65 22.42 0.19 -7.06 16 15 C -0.05 -1.83 10.03 22.23 0.22 -1.61 16 16 C -0.21 -9.38 9.99 22.41 0.22 -9.15 16 17 C 0.13 6.83 6.64 22.56 0.15 6.98 16 18 O -0.22 -13.67 9.76 -22.88 -0.22 -13.89 16 19 C -0.42 -24.34 9.44 67.92 0.64 -23.70 16 20 H 0.10 5.35 5.29 -2.91 -0.02 5.33 16 21 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 22 N -0.92 -56.70 13.67 21.61 0.30 -56.40 16 23 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 C -0.26 -11.81 9.05 22.51 0.20 -11.61 16 28 C 0.12 2.18 5.60 86.38 0.48 2.66 16 29 H 0.12 0.15 7.94 -2.39 -0.02 0.13 16 30 H 0.08 0.73 8.12 -2.38 -0.02 0.71 16 31 H 0.12 0.15 7.70 -2.39 -0.02 0.13 16 32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.12 -0.10 5.93 -2.38 -0.01 -0.12 16 34 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 1.13 8.07 -2.39 -0.02 1.11 16 37 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 38 H 0.42 10.57 8.56 -92.71 -0.79 9.78 16 39 H 0.13 4.53 6.52 -2.91 -0.02 4.51 16 40 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.13 5.64 5.71 -2.91 -0.02 5.63 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.78 6.76 -2.39 -0.02 1.76 16 Total: -1.00 -83.71 370.67 3.79 -79.92 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.24 Total: 28.97 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 5.57 Total: -16.18 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -3.72 Total: -88.45 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.32 Total: -49.45 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -83.71 3.79 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -83.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds