Wall clock time and date at job start Tue Mar 31 2020 18:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47210 * 2 1 4 4 C 1.34960 * 116.99981 * 179.97438 * 3 2 1 5 5 O 1.21696 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.41313 * 119.99780 * 179.97438 * 4 3 2 7 7 C 1.35433 * 126.14714 * 174.83071 * 6 4 3 8 8 N 1.36799 * 126.14539 * 359.92117 * 7 6 4 9 9 C 1.38591 * 119.99681 * 120.32691 * 8 7 6 10 10 C 1.39657 * 119.42465 * 353.14941 * 9 8 7 11 11 C 1.36593 * 119.49637 * 179.75083 * 10 9 8 12 12 C 1.41306 * 118.39708 * 0.51069 * 11 10 9 13 13 C 1.41170 * 120.57187 * 179.70438 * 12 11 10 14 14 H 1.08000 * 120.00195 * 208.72584 * 13 12 11 15 15 C 1.39896 * 120.00036 * 28.72979 * 13 12 11 16 16 N 1.30878 * 120.00155 * 11.01840 * 15 13 12 17 17 Si 1.86800 * 120.00109 * 191.01856 * 15 13 12 18 18 H 1.48499 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47270 * 119.99984 * 17 15 13 20 20 H 1.48509 * 109.47312 * 239.99973 * 17 15 13 21 21 C 1.40797 * 118.85303 * 359.73145 * 12 11 10 22 22 C 1.50699 * 119.82010 * 179.97438 * 21 12 11 23 23 N 1.31440 * 120.36355 * 0.02562 * 21 12 11 24 24 C 1.51220 * 107.70100 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.16575 * 258.54629 * 24 7 6 26 26 C 1.53000 * 110.16936 * 136.82969 * 24 7 6 27 27 O 1.43935 * 105.88545 * 17.64586 * 24 7 6 28 28 C 1.44105 * 104.27069 * 331.69177 * 27 24 7 29 29 H 1.09001 * 109.46908 * 60.00068 * 1 2 3 30 30 H 1.09007 * 109.47372 * 300.00245 * 1 2 3 31 31 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46942 * 119.99377 * 2 1 3 33 33 H 1.08995 * 109.47642 * 239.99624 * 2 1 3 34 34 H 0.97001 * 120.00765 * 300.31872 * 8 7 6 35 35 H 1.08003 * 120.24959 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.79730 * 180.21759 * 11 10 9 37 37 H 0.96995 * 120.00345 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47480 * 270.02202 * 22 21 12 39 39 H 1.09001 * 109.47022 * 30.02913 * 22 21 12 40 40 H 1.09001 * 109.47351 * 150.02074 * 22 21 12 41 41 H 1.09000 * 109.47259 * 59.99761 * 26 24 7 42 42 H 1.09001 * 109.47291 * 179.97438 * 26 24 7 43 43 H 1.09000 * 109.46634 * 299.99186 * 26 24 7 44 44 H 1.08994 * 110.31477 * 269.29253 * 28 27 24 45 45 H 1.09004 * 110.10492 * 147.44854 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 8 4.0857 0.5590 0.0005 6 6 3.8844 2.8300 0.0000 7 6 5.1962 3.1520 0.0990 8 7 6.2363 2.2715 0.2189 9 6 7.2406 2.2513 -0.7359 10 6 7.1081 3.0301 -1.8876 11 6 8.0993 3.0152 -2.8272 12 6 9.2277 2.1953 -2.6008 13 6 10.2762 2.1401 -3.5445 14 1 10.8723 1.2444 -3.6377 15 6 10.5431 3.2457 -4.3590 16 7 9.9742 4.3971 -4.1066 17 14 11.7114 3.0788 -5.8070 18 1 12.2176 1.6845 -5.8764 19 1 10.9918 3.4068 -7.0640 20 1 12.8530 4.0124 -5.6321 21 6 9.2880 1.4339 -1.4180 22 6 10.4810 0.5516 -1.1546 23 7 8.3089 1.4877 -0.5426 24 6 5.3042 4.6596 0.0544 25 1 5.6170 4.9848 -0.9378 26 6 6.3005 5.1485 1.1076 27 8 3.9859 5.1579 0.3471 28 6 3.1022 4.1188 -0.1176 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 6.2711 1.6615 0.9723 35 1 6.2302 3.6424 -2.0323 36 1 8.0203 3.6120 -3.7239 37 1 10.1595 5.1638 -4.6710 38 1 10.2981 -0.4399 -1.5689 39 1 11.3639 0.9847 -1.6246 40 1 10.6438 0.4719 -0.0798 41 1 7.2806 4.7143 0.9098 42 1 6.3699 6.2355 1.0653 43 1 5.9612 4.8441 2.0976 44 1 2.8232 4.2957 -1.1563 45 1 2.2115 4.0763 0.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157385227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:32 Heat of formation + Delta-G solvation = -76.913528 kcal Electronic energy + Delta-G solvation = -28758.451288 eV Core-core repulsion = 24741.399722 eV Total energy + Delta-G solvation = -4017.051565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.93511 -39.71305 -38.74086 -36.65136 -35.77111 -33.89559 -32.35519 -31.56010 -31.31785 -31.10766 -29.79964 -27.03661 -25.71924 -24.86744 -24.56760 -22.78736 -21.82700 -21.10644 -20.76841 -19.14707 -17.69051 -17.44792 -16.93016 -16.70458 -16.50942 -15.95069 -15.80387 -15.28406 -14.57947 -14.35839 -14.01792 -13.85145 -13.79599 -13.44199 -13.26520 -12.91939 -12.79953 -12.61242 -12.14699 -11.98989 -11.97451 -11.90009 -11.82188 -11.70882 -11.52417 -11.47524 -11.42352 -11.29228 -10.99284 -10.74532 -10.57917 -10.43985 -10.19891 -9.90755 -9.58046 -9.25281 -8.55951 -8.32088 -8.21935 -7.02812 -6.82819 -4.42621 0.94506 2.52257 2.81128 2.90766 3.00583 3.05122 3.05977 3.16781 3.49992 3.83070 3.95712 4.49040 4.69354 4.74318 4.84031 4.90568 5.08009 5.19081 5.22497 5.37983 5.45979 5.50845 5.59018 5.65319 5.71352 5.72559 5.80202 5.92725 5.96856 6.05249 6.21398 6.24698 6.31145 6.41145 6.58787 6.59619 6.67103 6.69592 6.86987 7.03332 7.16734 7.26193 7.53371 7.70199 7.99324 8.03517 8.07872 8.35279 8.63578 8.66151 9.46161 10.05951 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003189 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.953641 B = 8779.083992 C = 9348.851677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.531 3.469 5 O -0.507 6.507 6 C -0.307 4.307 7 C 0.257 3.743 8 N -0.637 5.637 9 C 0.249 3.751 10 C -0.187 4.187 11 C -0.094 4.094 12 C 0.048 3.952 13 C -0.443 4.443 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.800 5.800 17 Si 0.913 3.087 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.274 1.274 21 C 0.039 3.961 22 C -0.072 4.072 23 N -0.497 5.497 24 C 0.085 3.915 25 H 0.100 0.900 26 C -0.143 4.143 27 O -0.355 6.355 28 C 0.109 3.891 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.282 0.718 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 -0.351 5.221 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.379 3.621 5 O -0.397 6.397 6 C -0.315 4.315 7 C 0.149 3.851 8 N -0.264 5.264 9 C 0.020 3.980 10 C -0.210 4.210 11 C -0.120 4.120 12 C 0.043 3.957 13 C -0.474 4.474 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.426 5.426 17 Si 0.737 3.263 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.102 4.102 22 C -0.129 4.129 23 N -0.210 5.210 24 C 0.025 3.975 25 H 0.118 0.882 26 C -0.200 4.200 27 O -0.274 6.274 28 C 0.032 3.968 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.251 0.749 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.353 -0.650 5.876 12.800 hybrid contribution 0.339 -0.040 -1.222 1.269 sum -11.014 -0.690 4.654 11.977 Atomic orbital electron populations 1.21793 0.92871 1.02707 1.03343 1.22537 0.95079 0.81285 1.02325 1.86179 1.24581 1.31587 1.85155 1.18624 0.80257 0.89084 0.74108 1.90939 1.59847 1.42320 1.46611 1.20540 0.95808 0.93738 1.21393 1.20514 0.86813 0.91960 0.85798 1.40276 1.21024 1.38017 1.27059 1.17381 0.90361 1.00855 0.89399 1.20880 1.00858 1.03382 0.95887 1.21300 0.91574 1.00518 0.98636 1.18271 0.93102 0.92232 0.92060 1.19486 1.13225 0.99866 1.14780 0.89767 1.25936 0.96265 0.94527 0.97873 1.69764 1.37127 1.00668 1.35044 0.86177 0.79882 0.79744 0.80499 1.18305 1.19733 1.19889 1.20825 0.94511 1.03666 0.91226 1.20274 0.95229 0.97142 1.00280 1.66142 1.00786 1.20572 1.33500 1.22176 0.85374 0.88780 1.01123 0.88248 1.21787 0.98314 1.02182 0.97765 1.89165 1.15107 1.39761 1.83335 1.21643 0.92873 0.82070 1.00220 0.91552 0.91629 0.90533 0.91803 0.91682 0.74877 0.88355 0.85029 0.90727 0.93168 0.91083 0.93173 0.90204 0.91070 0.91924 0.90815 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.72 6.10 37.16 0.23 0.95 16 3 O -0.36 -5.05 9.91 -41.21 -0.41 -5.46 16 4 C 0.53 8.90 7.71 31.90 0.25 9.15 16 5 O -0.51 -10.00 15.65 -19.42 -0.30 -10.30 16 6 C -0.31 -4.88 6.09 -104.20 -0.63 -5.51 16 7 C 0.26 4.34 4.85 -81.12 -0.39 3.94 16 8 N -0.64 -12.09 4.34 -8.02 -0.03 -12.12 16 9 C 0.25 5.53 7.59 -154.94 -1.18 4.36 16 10 C -0.19 -4.20 8.89 -39.65 -0.35 -4.55 16 11 C -0.09 -2.31 8.70 -39.01 -0.34 -2.65 16 12 C 0.05 1.21 5.56 -106.65 -0.59 0.62 16 13 C -0.44 -10.86 8.06 -37.85 -0.30 -11.17 16 14 H 0.08 1.97 6.99 -52.49 -0.37 1.60 16 15 C 0.07 1.66 5.27 -17.34 -0.09 1.57 16 16 N -0.80 -19.30 10.89 55.55 0.60 -18.69 16 17 Si 0.91 17.63 29.57 -169.99 -5.03 12.60 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 C 0.04 0.92 6.86 -81.79 -0.56 0.36 16 22 C -0.07 -1.46 9.58 36.01 0.35 -1.11 16 23 N -0.50 -11.77 10.29 -8.00 -0.08 -11.86 16 24 C 0.09 1.30 3.50 -27.63 -0.10 1.20 16 25 H 0.10 1.56 6.43 -51.93 -0.33 1.22 16 26 C -0.14 -2.02 9.53 37.16 0.35 -1.67 16 27 O -0.36 -5.18 11.46 -35.23 -0.40 -5.59 16 28 C 0.11 1.45 7.40 36.26 0.27 1.72 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.41 7.68 8.80 -40.82 -0.36 7.32 16 35 H 0.10 1.99 5.36 -52.48 -0.28 1.71 16 36 H 0.13 3.28 6.32 -52.49 -0.33 2.95 16 37 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.40 6.83 -51.93 -0.35 1.05 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -28.12 376.10 -8.94 -37.06 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.23 Total: 12.31 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.72 Total: -3.62 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.49 Total: -42.67 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.12 Total: -21.35 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.12 -8.94 -37.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157385227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.856 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds