Wall clock time and date at job start Tue Mar 31 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47210 * 2 1 4 4 C 1.34960 * 116.99981 * 179.97438 * 3 2 1 5 5 O 1.21696 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.41313 * 119.99780 * 179.97438 * 4 3 2 7 7 C 1.35433 * 126.14714 * 174.83071 * 6 4 3 8 8 N 1.36799 * 126.14539 * 359.92117 * 7 6 4 9 9 C 1.38591 * 119.99681 * 120.32691 * 8 7 6 10 10 C 1.39657 * 119.42465 * 353.14941 * 9 8 7 11 11 C 1.36593 * 119.49637 * 179.75083 * 10 9 8 12 12 C 1.41306 * 118.39708 * 0.51069 * 11 10 9 13 13 C 1.41170 * 120.57187 * 179.70438 * 12 11 10 14 14 H 1.08000 * 120.00195 * 208.72584 * 13 12 11 15 15 C 1.39896 * 120.00036 * 28.72979 * 13 12 11 16 16 N 1.30878 * 120.00155 * 11.01840 * 15 13 12 17 17 Si 1.86800 * 120.00109 * 191.01856 * 15 13 12 18 18 H 1.48499 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47270 * 119.99984 * 17 15 13 20 20 H 1.48509 * 109.47312 * 239.99973 * 17 15 13 21 21 C 1.40797 * 118.85303 * 359.73145 * 12 11 10 22 22 C 1.50699 * 119.82010 * 179.97438 * 21 12 11 23 23 N 1.31440 * 120.36355 * 0.02562 * 21 12 11 24 24 C 1.51220 * 107.70100 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.16575 * 258.54629 * 24 7 6 26 26 C 1.53000 * 110.16936 * 136.82969 * 24 7 6 27 27 O 1.43935 * 105.88545 * 17.64586 * 24 7 6 28 28 C 1.44105 * 104.27069 * 331.69177 * 27 24 7 29 29 H 1.09001 * 109.46908 * 60.00068 * 1 2 3 30 30 H 1.09007 * 109.47372 * 300.00245 * 1 2 3 31 31 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46942 * 119.99377 * 2 1 3 33 33 H 1.08995 * 109.47642 * 239.99624 * 2 1 3 34 34 H 0.97001 * 120.00765 * 300.31872 * 8 7 6 35 35 H 1.08003 * 120.24959 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.79730 * 180.21759 * 11 10 9 37 37 H 0.96995 * 120.00345 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47480 * 270.02202 * 22 21 12 39 39 H 1.09001 * 109.47022 * 30.02913 * 22 21 12 40 40 H 1.09001 * 109.47351 * 150.02074 * 22 21 12 41 41 H 1.09000 * 109.47259 * 59.99761 * 26 24 7 42 42 H 1.09001 * 109.47291 * 179.97438 * 26 24 7 43 43 H 1.09000 * 109.46634 * 299.99186 * 26 24 7 44 44 H 1.08994 * 110.31477 * 269.29253 * 28 27 24 45 45 H 1.09004 * 110.10492 * 147.44854 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 8 4.0857 0.5590 0.0005 6 6 3.8844 2.8300 0.0000 7 6 5.1962 3.1520 0.0990 8 7 6.2363 2.2715 0.2189 9 6 7.2406 2.2513 -0.7359 10 6 7.1081 3.0301 -1.8876 11 6 8.0993 3.0152 -2.8272 12 6 9.2277 2.1953 -2.6008 13 6 10.2762 2.1401 -3.5445 14 1 10.8723 1.2444 -3.6377 15 6 10.5431 3.2457 -4.3590 16 7 9.9742 4.3971 -4.1066 17 14 11.7114 3.0788 -5.8070 18 1 12.2176 1.6845 -5.8764 19 1 10.9918 3.4068 -7.0640 20 1 12.8530 4.0124 -5.6321 21 6 9.2880 1.4339 -1.4180 22 6 10.4810 0.5516 -1.1546 23 7 8.3089 1.4877 -0.5426 24 6 5.3042 4.6596 0.0544 25 1 5.6170 4.9848 -0.9378 26 6 6.3005 5.1485 1.1076 27 8 3.9859 5.1579 0.3471 28 6 3.1022 4.1188 -0.1176 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 6.2711 1.6615 0.9723 35 1 6.2302 3.6424 -2.0323 36 1 8.0203 3.6120 -3.7239 37 1 10.1595 5.1638 -4.6710 38 1 10.2981 -0.4399 -1.5689 39 1 11.3639 0.9847 -1.6246 40 1 10.6438 0.4719 -0.0798 41 1 7.2806 4.7143 0.9098 42 1 6.3699 6.2355 1.0653 43 1 5.9612 4.8441 2.0976 44 1 2.8232 4.2957 -1.1563 45 1 2.2115 4.0763 0.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157385227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:31 Heat of formation + Delta-G solvation = -91.500048 kcal Electronic energy + Delta-G solvation = -28759.083807 eV Core-core repulsion = 24741.399722 eV Total energy + Delta-G solvation = -4017.684084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24515 -41.04862 -40.35570 -37.96494 -37.25978 -35.60958 -33.63017 -33.04848 -32.76414 -32.26290 -31.33470 -28.76303 -27.07424 -26.24119 -25.93633 -23.81103 -23.42942 -22.76016 -22.11370 -20.53459 -19.27249 -18.98836 -18.40858 -18.09539 -17.74188 -17.16836 -17.09922 -16.94789 -16.12712 -15.65905 -15.40176 -15.30233 -15.10335 -14.81117 -14.53121 -14.43496 -13.98664 -13.73493 -13.60149 -13.56607 -13.36334 -13.22526 -13.13726 -12.96134 -12.88106 -12.82809 -12.71308 -12.65656 -12.46675 -12.27780 -12.01726 -11.63140 -11.55501 -11.48847 -11.23890 -10.69948 -10.26000 -10.06162 -9.82812 -8.74744 -8.55082 -6.24764 -0.41545 0.75556 1.02622 1.43022 1.51515 1.56642 1.74062 1.79064 2.06253 2.22894 2.73403 2.79823 3.35378 3.51960 3.65381 3.90270 3.94302 3.99253 4.08961 4.09648 4.27652 4.33943 4.42072 4.49265 4.51557 4.57677 4.62286 4.69944 4.84786 4.87742 4.92638 4.94324 4.97327 5.01001 5.10799 5.13643 5.14604 5.29178 5.40119 5.44221 5.49751 5.55393 5.77842 5.90830 6.31117 6.41847 6.58189 6.72751 6.84300 6.86673 7.66902 8.34843 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003189 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.953641 B = 8779.083992 C = 9348.851677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.530 3.470 5 O -0.541 6.541 6 C -0.294 4.294 7 C 0.236 3.764 8 N -0.638 5.638 9 C 0.259 3.741 10 C -0.192 4.192 11 C -0.110 4.110 12 C 0.018 3.982 13 C -0.470 4.470 14 H 0.087 0.913 15 C 0.033 3.967 16 N -0.830 5.830 17 Si 0.982 3.018 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.268 1.268 21 C 0.022 3.978 22 C -0.065 4.065 23 N -0.514 5.514 24 C 0.090 3.910 25 H 0.095 0.905 26 C -0.138 4.138 27 O -0.354 6.354 28 C 0.109 3.891 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.412 0.588 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.288 0.712 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -0.086 5.333 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.379 3.621 5 O -0.433 6.433 6 C -0.302 4.302 7 C 0.130 3.870 8 N -0.266 5.266 9 C 0.029 3.971 10 C -0.215 4.215 11 C -0.136 4.136 12 C 0.013 3.987 13 C -0.500 4.500 14 H 0.105 0.895 15 C -0.181 4.181 16 N -0.457 5.457 17 Si 0.804 3.196 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.118 4.118 22 C -0.123 4.123 23 N -0.229 5.229 24 C 0.031 3.969 25 H 0.113 0.887 26 C -0.196 4.196 27 O -0.272 6.272 28 C 0.033 3.967 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.983 -0.370 6.012 14.312 hybrid contribution 0.555 -0.169 -1.134 1.274 sum -12.428 -0.538 4.878 13.361 Atomic orbital electron populations 1.21806 0.89725 1.04385 1.03918 1.22876 0.97481 0.79929 1.01925 1.86184 1.22829 1.33207 1.84351 1.18840 0.81001 0.88949 0.73276 1.90930 1.60872 1.43479 1.48062 1.20906 0.95892 0.94661 1.18731 1.20830 0.86662 0.92617 0.86888 1.40116 1.20938 1.38850 1.26712 1.17620 0.90227 0.99474 0.89823 1.20998 1.01072 1.03766 0.95625 1.21307 0.92356 1.01008 0.98918 1.18591 0.93827 0.93249 0.93062 1.19675 1.13787 1.00597 1.15936 0.89509 1.26718 0.97647 0.93829 0.99899 1.69817 1.38409 1.01371 1.36119 0.85133 0.77755 0.79740 0.77009 1.17950 1.19326 1.19334 1.21361 0.95559 1.03910 0.90968 1.20267 0.93903 0.96989 1.01111 1.66265 1.01418 1.21507 1.33672 1.22089 0.86076 0.87561 1.01209 0.88747 1.21735 0.96886 1.03061 0.97872 1.89170 1.14743 1.39891 1.83441 1.21875 0.92849 0.80090 1.01926 0.91128 0.90849 0.88327 0.91927 0.92505 0.74895 0.86558 0.86141 0.90107 0.92014 0.90926 0.92013 0.92302 0.89445 0.91023 0.89014 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.05 1.13 6.10 71.98 0.44 1.57 16 3 O -0.35 -9.21 9.91 -58.77 -0.58 -9.79 16 4 C 0.53 17.18 7.71 68.58 0.53 17.71 16 5 O -0.54 -21.25 15.65 19.19 0.30 -20.95 16 6 C -0.29 -8.91 6.09 -19.59 -0.12 -9.02 16 7 C 0.24 7.77 4.85 41.30 0.20 7.97 16 8 N -0.64 -24.36 4.34 -179.29 -0.78 -25.14 16 9 C 0.26 11.69 7.59 133.23 1.01 12.70 16 10 C -0.19 -8.78 8.89 22.23 0.20 -8.58 16 11 C -0.11 -5.55 8.70 22.64 0.20 -5.35 16 12 C 0.02 0.91 5.56 -21.18 -0.12 0.79 16 13 C -0.47 -23.55 8.06 23.39 0.19 -23.36 16 14 H 0.09 4.14 6.99 -2.91 -0.02 4.12 16 15 C 0.03 1.57 5.27 85.24 0.45 2.02 16 16 N -0.83 -40.88 10.89 21.82 0.24 -40.64 16 17 Si 0.98 36.19 29.57 68.60 2.03 38.22 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 21 C 0.02 1.08 6.86 43.24 0.30 1.38 16 22 C -0.07 -2.66 9.58 71.24 0.68 -1.98 16 23 N -0.51 -24.84 10.29 -179.23 -1.84 -26.69 16 24 C 0.09 2.64 3.50 30.01 0.11 2.75 16 25 H 0.10 2.88 6.43 -2.39 -0.02 2.87 16 26 C -0.14 -3.78 9.53 71.98 0.69 -3.09 16 27 O -0.35 -9.45 11.46 -148.98 -1.71 -11.15 16 28 C 0.11 2.59 7.40 71.40 0.53 3.12 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.41 15.55 8.80 -92.71 -0.82 14.73 16 35 H 0.12 4.75 5.36 -2.91 -0.02 4.74 16 36 H 0.12 6.26 6.32 -2.91 -0.02 6.24 16 37 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.90 6.83 -2.39 -0.02 2.88 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -61.37 376.10 3.88 -57.49 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: 0.22 Total: 41.20 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.01 Total: -2.55 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -2.39 Total: -92.46 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.99 Total: -41.89 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -61.37 3.88 -57.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157385227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.011 kcal (2) G-P(sol) polarization free energy of solvation -61.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds