Wall clock time and date at job start Tue Mar 31 2020 16:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47178 * 2 1 4 4 C 1.50695 * 109.47174 * 120.00523 * 2 1 3 5 5 O 1.21277 * 120.00258 * 112.86438 * 4 2 1 6 6 N 1.34782 * 119.99796 * 292.86244 * 4 2 1 7 7 C 1.46498 * 119.99884 * 185.12135 * 6 4 2 8 8 C 1.53002 * 109.47387 * 174.91173 * 7 6 4 9 9 C 1.50704 * 115.54637 * 304.35347 * 8 7 6 10 10 H 1.07998 * 119.99574 * 95.59286 * 9 8 7 11 11 C 1.37868 * 120.00107 * 275.59133 * 9 8 7 12 12 N 1.31516 * 120.00057 * 5.34616 * 11 9 8 13 13 Si 1.86802 * 120.00249 * 185.34178 * 11 9 8 14 14 H 1.48506 * 109.46775 * 60.00236 * 13 11 9 15 15 H 1.48501 * 109.47157 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47303 * 300.00309 * 13 11 9 17 17 C 1.52995 * 117.50342 * 158.68079 * 8 7 6 18 18 C 1.52995 * 117.49719 * 90.02060 * 8 7 6 19 19 N 1.46499 * 109.47123 * 240.00598 * 2 1 3 20 20 C 1.34522 * 126.74239 * 324.99713 * 19 2 1 21 21 N 1.30675 * 108.29097 * 179.97438 * 20 19 2 22 22 C 1.33960 * 109.77835 * 0.02562 * 21 20 19 23 23 C 1.48484 * 125.64699 * 180.02562 * 22 21 20 24 24 N 1.34043 * 126.67097 * 180.02562 * 23 22 21 25 25 N 1.28986 * 107.26461 * 179.73740 * 24 23 22 26 26 N 1.28731 * 108.94701 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.34464 * 180.02562 * 26 25 24 28 28 N 1.28870 * 109.31012 * 0.02562 * 26 25 24 29 29 N 1.31464 * 108.70572 * 0.26338 * 22 21 20 30 30 H 1.08992 * 109.47325 * 185.23019 * 1 2 3 31 31 H 1.09007 * 109.46838 * 305.23692 * 1 2 3 32 32 H 1.09000 * 109.47041 * 65.22703 * 1 2 3 33 33 H 0.97001 * 120.00106 * 5.12197 * 6 4 2 34 34 H 1.09000 * 109.47565 * 294.91393 * 7 6 4 35 35 H 1.09002 * 109.47562 * 54.90879 * 7 6 4 36 36 H 0.97003 * 120.00483 * 185.00285 * 12 11 9 37 37 H 1.08998 * 117.49646 * 0.02562 * 17 8 7 38 38 H 1.08996 * 117.49879 * 145.02106 * 17 8 7 39 39 H 1.09007 * 117.49993 * 214.98395 * 18 8 7 40 40 H 1.08998 * 117.50323 * 359.97438 * 18 8 7 41 41 H 1.08002 * 125.85733 * 359.96942 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6192 -1.7664 1.1237 6 7 1.8293 -0.1724 2.4493 7 6 2.4137 -0.8036 3.6352 8 6 2.1418 0.0677 4.8631 9 6 2.6141 1.4954 4.7644 10 1 1.9287 2.2706 4.4551 11 6 3.9209 1.8118 5.0689 12 7 4.7820 0.8563 5.3433 13 14 4.4687 3.5975 5.0917 14 1 3.6744 4.3461 6.0987 15 1 5.9091 3.6690 5.4455 16 1 4.2578 4.1972 3.7496 17 6 2.2083 -0.6051 6.2356 18 6 0.8551 -0.1983 5.6470 19 7 2.0183 -0.6905 -1.1962 20 6 1.4540 -1.7524 -1.7991 21 7 2.1863 -2.0744 -2.8324 22 6 3.2310 -1.2410 -2.9250 23 6 4.2858 -1.2882 -3.9690 24 7 5.3388 -0.4664 -4.0809 25 7 6.0130 -0.8462 -5.1128 26 7 5.4279 -1.8629 -5.6433 27 1 5.7337 -2.3381 -6.4316 28 7 4.3721 -2.1501 -4.9624 29 7 3.1706 -0.3776 -1.9354 30 1 -0.3633 -1.0233 0.0937 31 1 -0.3633 0.5930 0.8394 32 1 -0.3633 0.4306 -0.9331 33 1 1.2964 0.6328 2.5414 34 1 1.9664 -1.7869 3.7811 35 1 3.4895 -0.9110 3.4969 36 1 5.6816 1.0812 5.6281 37 1 2.4462 -1.6685 6.2638 38 1 2.5933 -0.0151 7.0672 39 1 0.3503 0.6594 6.0918 40 1 0.2021 -0.9936 5.2878 41 1 0.5507 -2.2532 -1.4833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588979366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:58 Heat of formation + Delta-G solvation = 213.348673 kcal Electronic energy + Delta-G solvation = -27530.632184 eV Core-core repulsion = 23487.212491 eV Total energy + Delta-G solvation = -4043.419693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -44.68605 -42.26203 -39.43572 -36.87747 -35.23799 -34.52052 -33.66255 -33.28862 -32.05857 -31.57851 -30.15273 -26.70231 -25.63763 -25.33689 -24.90838 -24.23998 -22.03098 -21.27530 -21.21339 -19.94393 -19.46340 -19.32749 -17.69330 -17.40080 -17.00550 -16.28051 -15.88240 -15.27786 -15.12471 -15.01292 -14.69523 -14.47739 -14.11058 -14.03643 -13.25275 -13.16453 -12.81552 -12.65252 -12.51268 -12.43649 -11.96929 -11.70822 -11.64552 -11.56188 -11.37034 -11.34130 -11.11115 -10.95426 -10.60566 -10.35978 -10.26013 -10.19745 -9.77977 -9.66452 -9.27754 -9.06066 -8.55915 -8.50149 -8.18445 -6.15884 -4.26102 0.72558 1.16181 1.68836 1.88718 2.16064 2.81972 3.03958 3.17155 3.23465 3.30378 3.31421 3.55882 3.79651 4.30210 4.35744 4.44873 4.64082 4.80975 4.87258 5.08893 5.13143 5.20119 5.25213 5.26798 5.36830 5.64745 5.90137 5.93113 6.06717 6.13872 6.20913 6.36970 6.39513 6.57399 6.59664 6.73604 6.99979 7.06676 7.29647 7.37525 7.72878 7.77635 7.97787 8.01879 8.22796 8.56774 8.75499 9.42885 10.92353 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.002829 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.917363 B = 9895.728456 C =11026.445539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.135 0.865 4 C 0.495 3.505 5 O -0.539 6.539 6 N -0.688 5.688 7 C 0.163 3.837 8 C 0.027 3.973 9 C -0.505 4.505 10 H 0.060 0.940 11 C 0.076 3.924 12 N -0.871 5.871 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.149 4.149 18 C -0.210 4.210 19 N -0.346 5.346 20 C 0.279 3.721 21 N -0.516 5.516 22 C 0.292 3.708 23 C 0.268 3.732 24 N -0.241 5.241 25 N -0.049 5.049 26 N -0.226 5.226 27 H 0.478 0.522 28 N -0.256 5.256 29 N -0.250 5.250 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 -3.706 -16.597 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.153 0.847 4 C 0.277 3.723 5 O -0.417 6.417 6 N -0.337 5.337 7 C 0.041 3.959 8 C 0.026 3.974 9 C -0.542 4.542 10 H 0.078 0.922 11 C -0.129 4.129 12 N -0.507 5.507 13 Si 0.716 3.284 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.187 4.187 18 C -0.247 4.247 19 N -0.137 5.137 20 C -0.017 4.017 21 N -0.244 5.244 22 C 0.009 3.991 23 C -0.015 4.015 24 N -0.116 5.116 25 N -0.044 5.044 26 N -0.073 5.073 27 H 0.332 0.668 28 N -0.110 5.110 29 N -0.081 5.081 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.442 -3.958 -16.949 18.559 hybrid contribution -0.112 0.795 0.263 0.844 sum -6.554 -3.164 -16.686 18.204 Atomic orbital electron populations 1.22177 0.89882 1.04658 1.05145 1.21459 0.96476 0.98482 0.80953 0.84695 1.20288 0.81097 0.86153 0.84742 1.90744 1.42286 1.22358 1.86324 1.45823 1.52228 1.29920 1.05694 1.21045 0.98427 0.93106 0.83365 1.19015 0.94795 0.95347 0.88195 1.20273 0.95064 0.90518 1.48364 0.92157 1.24970 0.96300 0.97044 0.94587 1.69978 1.05251 1.31843 1.43583 0.86719 0.77767 0.85247 0.78653 1.20237 1.21226 1.20043 1.22489 0.98367 0.98352 0.99465 1.23058 0.91355 1.01804 1.08490 1.50171 1.17638 1.24320 1.21572 1.25912 0.99188 0.87685 0.88961 1.70485 1.05732 1.27158 1.20988 1.19508 0.93009 0.93686 0.92858 1.21322 0.94487 0.91818 0.93922 1.76261 1.03589 1.21998 1.09710 1.78997 1.19810 1.01142 1.04470 1.47814 1.14520 1.21281 1.23710 0.66762 1.75070 1.06131 1.23275 1.06558 1.78442 1.01660 1.22302 1.05689 0.90630 0.88352 0.90098 0.76228 0.94388 0.90683 0.92682 0.91658 0.89763 0.90270 0.91594 0.75953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.71 37.15 0.32 -0.85 16 2 C 0.13 1.63 3.76 -69.09 -0.26 1.37 16 3 H 0.14 1.55 8.14 -51.93 -0.42 1.13 16 4 C 0.50 8.32 7.14 -10.99 -0.08 8.24 16 5 O -0.54 -11.42 16.37 5.56 0.09 -11.33 16 6 N -0.69 -11.84 5.34 -60.29 -0.32 -12.16 16 7 C 0.16 3.44 5.56 -4.04 -0.02 3.42 16 8 C 0.03 0.60 1.48 -155.66 -0.23 0.37 16 9 C -0.50 -12.21 8.27 -34.44 -0.28 -12.50 16 10 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 11 C 0.08 1.94 5.40 -17.82 -0.10 1.85 16 12 N -0.87 -23.66 12.93 55.43 0.72 -22.94 16 13 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 C -0.15 -3.21 9.48 -26.70 -0.25 -3.46 16 18 C -0.21 -4.01 9.93 -26.70 -0.27 -4.27 16 19 N -0.35 -4.96 3.08 -57.26 -0.18 -5.13 16 20 C 0.28 3.54 11.67 -90.70 -1.06 2.48 16 21 N -0.52 -7.81 11.21 -12.37 -0.14 -7.95 16 22 C 0.29 4.82 8.08 -156.63 -1.27 3.56 16 23 C 0.27 4.08 8.31 -156.31 -1.30 2.79 16 24 N -0.24 -3.70 12.54 32.16 0.40 -3.29 16 25 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 26 N -0.23 -2.00 7.90 60.35 0.48 -1.52 16 27 H 0.48 1.54 8.96 -340.37 -3.05 -1.51 16 28 N -0.26 -3.20 12.40 32.17 0.40 -2.80 16 29 N -0.25 -4.31 12.73 32.11 0.41 -3.90 16 30 H 0.07 0.49 7.49 -51.93 -0.39 0.10 16 31 H 0.10 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.40 6.03 8.08 -40.82 -0.33 5.70 16 34 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 39 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.22 1.75 7.46 -52.49 -0.39 1.36 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -35.18 367.90 -9.10 -44.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.50 Total: 2.98 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -4.79 Total: 2.99 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 2.58 Total: -59.47 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.18 -9.10 -44.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588979366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.631 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds