Wall clock time and date at job start Tue Mar 31 2020 16:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47178 * 2 1 4 4 C 1.50695 * 109.47174 * 120.00523 * 2 1 3 5 5 O 1.21277 * 120.00258 * 112.86438 * 4 2 1 6 6 N 1.34782 * 119.99796 * 292.86244 * 4 2 1 7 7 C 1.46498 * 119.99884 * 185.12135 * 6 4 2 8 8 C 1.53002 * 109.47387 * 174.91173 * 7 6 4 9 9 C 1.50704 * 115.54637 * 304.35347 * 8 7 6 10 10 H 1.07998 * 119.99574 * 95.59286 * 9 8 7 11 11 C 1.37868 * 120.00107 * 275.59133 * 9 8 7 12 12 N 1.31516 * 120.00057 * 5.34616 * 11 9 8 13 13 Si 1.86802 * 120.00249 * 185.34178 * 11 9 8 14 14 H 1.48506 * 109.46775 * 60.00236 * 13 11 9 15 15 H 1.48501 * 109.47157 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47303 * 300.00309 * 13 11 9 17 17 C 1.52995 * 117.50342 * 158.68079 * 8 7 6 18 18 C 1.52995 * 117.49719 * 90.02060 * 8 7 6 19 19 N 1.46499 * 109.47123 * 240.00598 * 2 1 3 20 20 C 1.34522 * 126.74239 * 324.99713 * 19 2 1 21 21 N 1.30675 * 108.29097 * 179.97438 * 20 19 2 22 22 C 1.33960 * 109.77835 * 0.02562 * 21 20 19 23 23 C 1.48484 * 125.64699 * 180.02562 * 22 21 20 24 24 N 1.34043 * 126.67097 * 180.02562 * 23 22 21 25 25 N 1.28986 * 107.26461 * 179.73740 * 24 23 22 26 26 N 1.28731 * 108.94701 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.34464 * 180.02562 * 26 25 24 28 28 N 1.28870 * 109.31012 * 0.02562 * 26 25 24 29 29 N 1.31464 * 108.70572 * 0.26338 * 22 21 20 30 30 H 1.08992 * 109.47325 * 185.23019 * 1 2 3 31 31 H 1.09007 * 109.46838 * 305.23692 * 1 2 3 32 32 H 1.09000 * 109.47041 * 65.22703 * 1 2 3 33 33 H 0.97001 * 120.00106 * 5.12197 * 6 4 2 34 34 H 1.09000 * 109.47565 * 294.91393 * 7 6 4 35 35 H 1.09002 * 109.47562 * 54.90879 * 7 6 4 36 36 H 0.97003 * 120.00483 * 185.00285 * 12 11 9 37 37 H 1.08998 * 117.49646 * 0.02562 * 17 8 7 38 38 H 1.08996 * 117.49879 * 145.02106 * 17 8 7 39 39 H 1.09007 * 117.49993 * 214.98395 * 18 8 7 40 40 H 1.08998 * 117.50323 * 359.97438 * 18 8 7 41 41 H 1.08002 * 125.85733 * 359.96942 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6192 -1.7664 1.1237 6 7 1.8293 -0.1724 2.4493 7 6 2.4137 -0.8036 3.6352 8 6 2.1418 0.0677 4.8631 9 6 2.6141 1.4954 4.7644 10 1 1.9287 2.2706 4.4551 11 6 3.9209 1.8118 5.0689 12 7 4.7820 0.8563 5.3433 13 14 4.4687 3.5975 5.0917 14 1 3.6744 4.3461 6.0987 15 1 5.9091 3.6690 5.4455 16 1 4.2578 4.1972 3.7496 17 6 2.2083 -0.6051 6.2356 18 6 0.8551 -0.1983 5.6470 19 7 2.0183 -0.6905 -1.1962 20 6 1.4540 -1.7524 -1.7991 21 7 2.1863 -2.0744 -2.8324 22 6 3.2310 -1.2410 -2.9250 23 6 4.2858 -1.2882 -3.9690 24 7 5.3388 -0.4664 -4.0809 25 7 6.0130 -0.8462 -5.1128 26 7 5.4279 -1.8629 -5.6433 27 1 5.7337 -2.3381 -6.4316 28 7 4.3721 -2.1501 -4.9624 29 7 3.1706 -0.3776 -1.9354 30 1 -0.3633 -1.0233 0.0937 31 1 -0.3633 0.5930 0.8394 32 1 -0.3633 0.4306 -0.9331 33 1 1.2964 0.6328 2.5414 34 1 1.9664 -1.7869 3.7811 35 1 3.4895 -0.9110 3.4969 36 1 5.6816 1.0812 5.6281 37 1 2.4462 -1.6685 6.2638 38 1 2.5933 -0.0151 7.0672 39 1 0.3503 0.6594 6.0918 40 1 0.2021 -0.9936 5.2878 41 1 0.5507 -2.2532 -1.4833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588979366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:50 Heat of formation + Delta-G solvation = 187.488974 kcal Electronic energy + Delta-G solvation = -27531.753545 eV Core-core repulsion = 23487.212491 eV Total energy + Delta-G solvation = -4044.541054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.66397 -43.33353 -40.82095 -38.52672 -36.31415 -35.52474 -35.09517 -34.34835 -33.96746 -32.65844 -31.14295 -28.21737 -27.26143 -26.48022 -25.90329 -25.31643 -23.20015 -22.85885 -22.28944 -21.39824 -20.99521 -20.25214 -19.01561 -18.38470 -18.10233 -17.90620 -17.04429 -16.70805 -16.47896 -16.35379 -16.07127 -15.79424 -15.54121 -15.10306 -14.79093 -14.51180 -14.02839 -13.54927 -13.50417 -13.47805 -13.37937 -13.29683 -12.95856 -12.76867 -12.64914 -12.51278 -12.39993 -12.38833 -12.35959 -12.00099 -11.52854 -11.40830 -11.30734 -10.90301 -10.82195 -10.53531 -10.41069 -10.08483 -9.83454 -8.10587 -6.23513 -0.28461 0.11421 0.69567 0.90404 1.34502 1.44289 1.46168 1.51567 1.52233 1.93467 2.17158 2.30063 2.43880 2.77635 3.20045 3.41159 3.51632 3.56898 3.70155 3.80923 3.86302 4.14955 4.25255 4.27424 4.55547 4.64001 4.68478 4.71729 4.73345 4.85984 4.96524 5.02638 5.04967 5.18777 5.30221 5.50471 5.50906 5.60382 5.64945 5.68836 5.78576 6.36332 6.63754 6.72466 6.86048 6.96296 7.24179 7.47910 8.97134 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.002829 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.917363 B = 9895.728456 C =11026.445539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.142 0.858 4 C 0.495 3.505 5 O -0.588 6.588 6 N -0.681 5.681 7 C 0.180 3.820 8 C 0.005 3.995 9 C -0.500 4.500 10 H 0.071 0.929 11 C 0.025 3.975 12 N -0.909 5.909 13 Si 0.943 3.057 14 H -0.268 1.268 15 H -0.299 1.299 16 H -0.269 1.269 17 C -0.167 4.167 18 C -0.169 4.169 19 N -0.352 5.352 20 C 0.289 3.711 21 N -0.535 5.535 22 C 0.284 3.716 23 C 0.246 3.754 24 N -0.276 5.276 25 N -0.047 5.047 26 N -0.188 5.188 27 H 0.500 0.500 28 N -0.253 5.253 29 N -0.294 5.294 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.416 0.584 34 H 0.044 0.956 35 H 0.023 0.977 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 -3.322 -17.824 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.159 0.841 4 C 0.279 3.721 5 O -0.468 6.468 6 N -0.331 5.331 7 C 0.055 3.945 8 C 0.004 3.996 9 C -0.538 4.538 10 H 0.089 0.911 11 C -0.176 4.176 12 N -0.547 5.547 13 Si 0.769 3.231 14 H -0.193 1.193 15 H -0.225 1.225 16 H -0.194 1.194 17 C -0.205 4.205 18 C -0.206 4.206 19 N -0.143 5.143 20 C -0.006 4.006 21 N -0.263 5.263 22 C 0.001 3.999 23 C -0.037 4.037 24 N -0.150 5.150 25 N -0.041 5.041 26 N -0.041 5.041 27 H 0.361 0.639 28 N -0.109 5.109 29 N -0.125 5.125 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.253 0.747 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -9.240 -3.532 -18.197 20.711 hybrid contribution 0.755 0.583 0.583 1.118 sum -8.484 -2.949 -17.613 19.772 Atomic orbital electron populations 1.22298 0.85347 1.06253 1.07209 1.21642 0.99591 0.97410 0.77922 0.84072 1.21091 0.79775 0.85522 0.85696 1.90723 1.44267 1.24745 1.87095 1.45644 1.52133 1.30233 1.05070 1.20575 0.95560 0.93719 0.84606 1.19045 0.97548 0.94520 0.88505 1.20678 0.94794 0.91970 1.46354 0.91083 1.25673 0.96864 1.00001 0.95028 1.70124 1.05264 1.33466 1.45801 0.85854 0.76655 0.81668 0.78906 1.19296 1.22500 1.19386 1.22432 1.01108 0.98205 0.98736 1.23053 0.90059 1.02357 1.05150 1.50308 1.17091 1.25064 1.21830 1.26836 0.99584 0.86579 0.87623 1.70491 1.05967 1.27528 1.22360 1.19792 0.93519 0.93692 0.92937 1.21384 0.94822 0.92719 0.94739 1.76237 1.04344 1.23245 1.11145 1.78915 1.19501 1.01715 1.04008 1.47864 1.12922 1.19992 1.23328 0.63906 1.75018 1.06933 1.22738 1.06183 1.78336 1.03561 1.23812 1.06792 0.89280 0.86452 0.87829 0.74663 0.93811 0.95879 0.93489 0.91349 0.92058 0.89375 0.88698 0.71477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.71 71.98 0.63 -0.99 16 2 C 0.14 3.17 3.76 44.24 0.17 3.33 16 3 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 4 C 0.49 16.21 7.14 87.65 0.63 16.84 16 5 O -0.59 -25.11 16.37 -3.02 -0.05 -25.16 16 6 N -0.68 -22.70 5.34 -463.06 -2.47 -25.17 16 7 C 0.18 7.60 5.56 86.38 0.48 8.08 16 8 C 0.00 0.20 1.48 -52.93 -0.08 0.12 16 9 C -0.50 -23.83 8.27 25.60 0.21 -23.62 16 10 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 11 C 0.03 1.29 5.40 84.65 0.46 1.75 16 12 N -0.91 -50.99 12.93 21.44 0.28 -50.71 16 13 Si 0.94 41.28 29.54 68.60 2.03 43.31 16 14 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 15 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 C -0.17 -7.16 9.48 30.62 0.29 -6.87 16 18 C -0.17 -6.00 9.93 30.61 0.30 -5.70 16 19 N -0.35 -9.68 3.08 -335.08 -1.03 -10.71 16 20 C 0.29 6.78 11.67 180.38 2.11 8.89 16 21 N -0.54 -15.78 11.21 -193.05 -2.16 -17.94 16 22 C 0.28 9.42 8.08 137.51 1.11 10.53 16 23 C 0.25 7.57 8.31 137.39 1.14 8.71 16 24 N -0.28 -8.57 12.54 -52.17 -0.65 -9.22 16 25 N -0.05 -1.08 13.47 37.02 0.50 -0.59 16 26 N -0.19 -3.08 7.90 37.02 0.29 -2.79 16 27 H 0.50 2.21 8.96 -347.54 -3.12 -0.91 16 28 N -0.25 -6.13 12.40 -52.12 -0.65 -6.77 16 29 N -0.29 -10.22 12.73 -52.32 -0.67 -10.89 16 30 H 0.09 0.75 7.49 -2.39 -0.02 0.73 16 31 H 0.12 0.86 8.06 -2.38 -0.02 0.84 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 11.51 8.08 -92.71 -0.75 10.76 16 34 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 37 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 40 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.27 3.23 7.46 -2.91 -0.02 3.21 16 Total: -1.00 -80.47 367.90 0.10 -80.37 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -2.75 Total: 15.21 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 7.44 Total: 21.06 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -6.57 Total: -134.79 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -80.47 0.10 -80.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588979366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.863 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds