Wall clock time and date at job start Tue Mar 31 2020 16:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 117.00199 * 2 1 4 4 C 1.38334 * 120.05810 * 359.97438 * 3 2 1 5 5 C 1.38609 * 120.58629 * 180.27632 * 4 3 2 6 6 C 1.37871 * 120.24905 * 359.48737 * 5 4 3 7 7 C 1.39192 * 119.73079 * 0.51055 * 6 5 4 8 8 C 1.47660 * 134.22315 * 179.71669 * 7 6 5 9 9 C 1.47066 * 127.13709 * 0.04733 * 8 7 6 10 10 O 1.21654 * 120.00335 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00028 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99939 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47463 * 35.00323 * 12 11 9 14 14 C 1.52996 * 109.47267 * 274.99512 * 12 11 9 15 15 C 1.53008 * 109.46899 * 154.99886 * 12 11 9 16 16 N 1.46498 * 109.47076 * 304.99733 * 15 12 11 17 17 C 1.46505 * 120.00031 * 269.99994 * 16 15 12 18 18 C 1.36938 * 120.00053 * 89.99761 * 16 15 12 19 19 H 1.08004 * 119.99581 * 20.30220 * 18 16 15 20 20 C 1.38807 * 120.00040 * 200.29466 * 18 16 15 21 21 N 1.31611 * 120.00401 * 15.02507 * 20 18 16 22 22 Si 1.86809 * 119.99810 * 195.02493 * 20 18 16 23 23 H 1.48492 * 109.47001 * 85.01327 * 22 20 18 24 24 H 1.48506 * 109.46960 * 205.01104 * 22 20 18 25 25 H 1.48494 * 109.47199 * 325.00962 * 22 20 18 26 26 C 1.36071 * 105.72127 * 180.02562 * 8 7 6 27 27 O 1.33766 * 109.83481 * 0.02562 * 26 8 7 28 28 C 1.34961 * 111.33603 * 359.97438 * 27 26 8 29 29 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46978 * 299.99823 * 1 2 3 31 31 H 1.08997 * 109.46954 * 59.99876 * 1 2 3 32 32 H 1.08000 * 119.71007 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.87650 * 179.75295 * 5 4 3 34 34 H 1.07997 * 120.13659 * 180.25569 * 6 5 4 35 35 H 0.97002 * 119.99378 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.47138 * 300.00430 * 14 12 11 37 37 H 1.09006 * 109.47188 * 60.00280 * 14 12 11 38 38 H 1.08997 * 109.47519 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.47100 * 64.99712 * 15 12 11 40 40 H 1.09003 * 109.46842 * 184.99912 * 15 12 11 41 41 H 1.09003 * 109.47050 * 95.10697 * 17 16 15 42 42 H 1.08997 * 109.46729 * 215.10573 * 17 16 15 43 43 H 1.08997 * 109.47042 * 335.10709 * 17 16 15 44 44 H 0.96996 * 120.00722 * 179.97438 * 21 20 18 45 45 H 1.08004 * 125.07957 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0063 6 6 3.2877 3.7039 -0.0009 7 6 4.0561 2.5433 -0.0004 8 6 5.5069 2.2687 -0.0008 9 6 6.5973 3.2556 -0.0008 10 8 6.3414 4.4449 -0.0010 11 7 7.8802 2.8424 -0.0017 12 6 8.9664 3.8255 -0.0023 13 1 8.6713 4.6933 0.5874 14 6 9.2593 4.2609 -1.4394 15 6 10.2222 3.1983 0.6066 16 7 9.9097 2.6740 1.9383 17 6 10.0632 3.5302 3.1172 18 6 9.4740 1.3837 2.0813 19 1 9.6642 0.6602 1.3023 20 6 8.7881 1.0057 3.2273 21 7 8.2975 1.9231 4.0335 22 14 8.5613 -0.8053 3.6255 23 1 9.7577 -1.3068 4.3482 24 1 7.3588 -0.9775 4.4797 25 1 8.3871 -1.5712 2.3653 26 6 5.6257 0.9132 -0.0005 27 8 4.4118 0.3512 -0.0006 28 6 3.4380 1.2858 -0.0004 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2158 2.3115 -0.0005 33 1 1.3135 4.5120 -0.0107 34 1 3.7672 4.6715 -0.0013 35 1 8.0843 1.8941 -0.0018 36 1 9.5544 3.3930 -2.0291 37 1 8.3647 4.7077 -1.8732 38 1 10.0677 4.9920 -1.4400 39 1 10.5685 2.3856 -0.0318 40 1 11.0031 3.9545 0.6878 41 1 9.1048 3.9893 3.3601 42 1 10.4023 2.9292 3.9609 43 1 10.7964 4.3089 2.9077 44 1 7.8179 1.6590 4.8341 45 1 6.5603 0.3720 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754311432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:40 Heat of formation + Delta-G solvation = -15.263400 kcal Electronic energy + Delta-G solvation = -29137.213334 eV Core-core repulsion = 25122.835119 eV Total energy + Delta-G solvation = -4014.378215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.42367 -39.55509 -38.89170 -36.89880 -36.22401 -33.95749 -32.55633 -31.24744 -30.33753 -30.08064 -28.76376 -27.37704 -26.18737 -25.62469 -23.79164 -22.80995 -22.19580 -21.56858 -20.11506 -19.63997 -18.20610 -17.68099 -16.74906 -16.61142 -16.40205 -15.55506 -15.51311 -15.45384 -15.09957 -14.91576 -14.78375 -14.17125 -13.70086 -13.57162 -13.24933 -13.03924 -12.92844 -12.77046 -12.39381 -12.26480 -12.16226 -11.88753 -11.45265 -11.40971 -11.33515 -11.28969 -11.25357 -10.87196 -10.72797 -10.41372 -10.27217 -10.07778 -9.85022 -9.61712 -9.34683 -8.59785 -8.56238 -8.29465 -7.77049 -6.82975 -5.77137 -3.21608 0.94379 1.33197 2.01833 2.74408 3.07193 3.30723 3.38216 3.42516 3.60117 3.81209 4.07729 4.42912 4.55414 4.72039 4.82293 4.94131 4.95729 5.12628 5.27113 5.32388 5.33573 5.36799 5.45986 5.53371 5.60402 5.70110 5.91366 5.98831 6.04506 6.15685 6.18755 6.25044 6.39347 6.44819 6.52108 6.57140 6.64541 6.73558 6.86188 6.88791 7.26879 7.35037 7.35954 7.66185 7.77633 8.28166 8.32441 8.93271 9.16538 9.81799 10.31449 11.26852 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.004228 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.663256 B = 6620.335769 C = 8106.814333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.195 4.195 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.048 4.048 8 C -0.220 4.220 9 C 0.592 3.408 10 O -0.555 6.555 11 N -0.683 5.683 12 C 0.120 3.880 13 H 0.078 0.922 14 C -0.160 4.160 15 C 0.142 3.858 16 N -0.598 5.598 17 C 0.163 3.837 18 C -0.262 4.262 19 H 0.067 0.933 20 C 0.009 3.991 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.077 3.923 27 O -0.176 6.176 28 C 0.017 3.983 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.400 0.600 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.042 0.958 43 H -0.003 1.003 44 H 0.253 0.747 45 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 -0.397 -10.427 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.097 3.903 4 C -0.213 4.213 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.050 4.050 8 C -0.224 4.224 9 C 0.379 3.621 10 O -0.435 6.435 11 N -0.332 5.332 12 C 0.012 3.988 13 H 0.096 0.904 14 C -0.219 4.219 15 C 0.013 3.987 16 N -0.320 5.320 17 C 0.018 3.982 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.538 5.538 22 Si 0.722 3.278 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.008 3.992 27 O -0.075 6.075 28 C -0.030 4.030 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.236 0.764 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.063 0.937 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.003 -0.055 -10.225 15.021 hybrid contribution -0.304 -1.288 0.563 1.438 sum -11.307 -1.343 -9.662 14.934 Atomic orbital electron populations 1.23068 0.78260 1.03996 1.01398 1.86148 1.21416 1.26272 1.88971 1.17636 0.86529 0.85428 1.00695 1.20881 0.99633 0.91127 1.09703 1.20816 0.94064 0.96889 0.99839 1.20632 0.92669 0.97937 1.00058 1.19251 0.91373 0.92715 1.01633 1.21060 0.92964 0.93601 1.14782 1.16894 0.81959 0.87041 0.76253 1.90699 1.84042 1.16812 1.51971 1.45538 1.04299 1.10631 1.72700 1.21845 0.89285 0.92654 0.94996 0.90385 1.22163 1.01319 1.00847 0.97555 1.21196 0.93043 0.96644 0.87798 1.43896 1.77183 1.11079 0.99850 1.20798 0.96860 0.91619 0.88910 1.19046 1.30463 0.85326 1.04335 0.91538 1.24928 0.98069 0.96942 0.99126 1.70074 1.37965 1.30997 1.14742 0.86486 0.77393 0.85480 0.78430 1.21398 1.21753 1.20444 1.24638 0.86966 0.92599 0.94998 1.83884 1.13513 1.35256 1.74816 1.18626 0.87579 0.86954 1.09801 0.88212 0.92490 0.92561 0.84463 0.84995 0.84218 0.76407 0.93012 0.92875 0.92217 0.93298 0.92858 0.95262 0.93894 0.98408 0.93659 0.76402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.29 10.50 -19.60 -0.21 -4.50 16 3 C 0.14 2.12 6.70 -39.12 -0.26 1.86 16 4 C -0.19 -2.39 9.02 -39.41 -0.36 -2.74 16 5 C -0.10 -1.25 10.03 -39.58 -0.40 -1.65 16 6 C -0.09 -1.54 9.88 -39.36 -0.39 -1.92 16 7 C -0.05 -0.88 6.29 -104.99 -0.66 -1.54 16 8 C -0.22 -4.15 6.31 -103.25 -0.65 -4.81 16 9 C 0.59 12.21 7.77 -12.68 -0.10 12.11 16 10 O -0.55 -12.79 15.94 5.23 0.08 -12.71 16 11 N -0.68 -13.03 4.48 -54.99 -0.25 -13.27 16 12 C 0.12 2.21 2.88 -67.93 -0.20 2.01 16 13 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 14 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 15 C 0.14 2.65 5.36 -4.04 -0.02 2.63 16 16 N -0.60 -13.92 2.82 -181.11 -0.51 -14.43 16 17 C 0.16 3.93 9.02 59.85 0.54 4.47 16 18 C -0.26 -6.47 8.02 -15.06 -0.12 -6.59 16 19 H 0.07 1.55 7.86 -52.48 -0.41 1.14 16 20 C 0.01 0.24 5.06 -17.44 -0.09 0.15 16 21 N -0.89 -25.24 10.66 55.49 0.59 -24.65 16 22 Si 0.89 20.72 29.58 -169.99 -5.03 15.69 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.08 1.28 11.52 29.95 0.35 1.63 16 27 O -0.18 -3.07 10.53 5.29 0.06 -3.01 16 28 C 0.02 0.30 7.33 -38.45 -0.28 0.02 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.14 1.20 6.26 -52.49 -0.33 0.87 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.14 2.33 7.53 -52.49 -0.40 1.93 16 35 H 0.40 7.25 6.32 -40.82 -0.26 6.99 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 40 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 41 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 42 H 0.04 1.11 7.21 -51.93 -0.37 0.74 16 43 H 0.00 -0.06 7.83 -51.93 -0.41 -0.46 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.22 2.98 7.41 -52.48 -0.39 2.59 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -32.78 375.86 -7.10 -39.88 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.21 Total: 6.51 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.29 Total: 4.82 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.17 Total: -52.35 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.07 Total: -20.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.78 -7.10 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.621 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds