Wall clock time and date at job start Tue Mar 31 2020 16:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35947 * 117.00282 * 2 1 4 4 C 1.38333 * 120.05917 * 359.97438 * 3 2 1 5 5 C 1.38610 * 120.58849 * 180.30345 * 4 3 2 6 6 C 1.37867 * 120.24862 * 359.44053 * 5 4 3 7 7 C 1.39192 * 119.72967 * 0.55554 * 6 5 4 8 8 C 1.47660 * 134.22492 * 179.70025 * 7 6 5 9 9 C 1.47076 * 127.13567 * 359.97438 * 8 7 6 10 10 O 1.21654 * 120.00201 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99930 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99974 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47161 * 324.99692 * 12 11 9 14 14 C 1.52993 * 109.47588 * 84.99850 * 12 11 9 15 15 C 1.53004 * 109.47162 * 204.99994 * 12 11 9 16 16 N 1.46499 * 109.47147 * 54.99462 * 15 12 11 17 17 C 1.46502 * 120.00459 * 270.00400 * 16 15 12 18 18 C 1.36938 * 120.00024 * 90.00142 * 16 15 12 19 19 H 1.08000 * 119.99686 * 23.64672 * 18 16 15 20 20 C 1.38805 * 120.00463 * 203.64428 * 18 16 15 21 21 N 1.31622 * 119.99873 * 11.27492 * 20 18 16 22 22 Si 1.86800 * 120.00486 * 191.26900 * 20 18 16 23 23 H 1.48506 * 109.47017 * 59.99811 * 22 20 18 24 24 H 1.48491 * 109.47372 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46865 * 300.00170 * 22 20 18 26 26 C 1.36071 * 105.72766 * 180.02562 * 8 7 6 27 27 O 1.33775 * 109.82795 * 359.97438 * 26 8 7 28 28 C 1.34964 * 111.33574 * 359.97438 * 27 26 8 29 29 H 1.08998 * 109.47297 * 300.00507 * 1 2 3 30 30 H 1.09002 * 109.46732 * 60.00109 * 1 2 3 31 31 H 1.08995 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.70917 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.87590 * 179.70248 * 5 4 3 34 34 H 1.07997 * 120.13569 * 180.27820 * 6 5 4 35 35 H 0.97004 * 119.99833 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.47557 * 179.97438 * 14 12 11 37 37 H 1.09000 * 109.46966 * 300.00056 * 14 12 11 38 38 H 1.08995 * 109.47337 * 59.99872 * 14 12 11 39 39 H 1.08993 * 109.47357 * 174.99793 * 15 12 11 40 40 H 1.09004 * 109.46614 * 294.99939 * 15 12 11 41 41 H 1.09003 * 109.47109 * 94.57900 * 17 16 15 42 42 H 1.08994 * 109.47325 * 214.58347 * 17 16 15 43 43 H 1.09001 * 109.46726 * 334.58218 * 17 16 15 44 44 H 0.97000 * 119.99829 * 180.02562 * 21 20 18 45 45 H 1.07996 * 125.08657 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2941 2.3722 -0.0005 5 6 1.9120 3.6130 -0.0069 6 6 3.2877 3.7038 -0.0011 7 6 4.0561 2.5432 -0.0006 8 6 5.5069 2.2686 -0.0008 9 6 6.5974 3.2555 -0.0023 10 8 6.3414 4.4448 -0.0031 11 7 7.8803 2.8423 -0.0029 12 6 8.9664 3.8253 -0.0038 13 1 8.6706 4.6930 -0.5934 14 6 9.2610 4.2613 1.4328 15 6 10.2215 3.1980 -0.6139 16 7 9.9074 2.6731 -1.9451 17 6 9.4412 1.2926 -2.0971 18 6 10.0495 3.4730 -3.0475 19 1 10.7239 4.3161 -3.0196 20 6 9.3270 3.2002 -4.2009 21 7 8.3488 2.3200 -4.1718 22 14 9.7427 4.0822 -5.7942 23 1 11.1477 3.7851 -6.1724 24 1 8.8310 3.6169 -6.8700 25 1 9.5795 5.5462 -5.6065 26 6 5.6257 0.9131 -0.0006 27 8 4.4117 0.3512 0.0004 28 6 3.4380 1.2857 0.0014 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2159 2.3114 -0.0005 33 1 1.3135 4.5120 -0.0121 34 1 3.7672 4.6715 -0.0015 35 1 8.0843 1.8939 -0.0019 36 1 10.0695 4.9924 1.4321 37 1 8.3669 4.7082 1.8674 38 1 9.5568 3.3936 2.0224 39 1 11.0023 3.9540 -0.6964 40 1 10.5685 2.3854 0.0244 41 1 8.3513 1.2767 -2.1118 42 1 9.8232 0.8808 -3.0311 43 1 9.8020 0.6933 -1.2612 44 1 7.8441 2.1291 -4.9779 45 1 6.5603 0.3718 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754311433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:44 Heat of formation + Delta-G solvation = -14.202178 kcal Electronic energy + Delta-G solvation = -28886.289983 eV Core-core repulsion = 24871.957785 eV Total energy + Delta-G solvation = -4014.332197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.50763 -39.61096 -38.99094 -36.95498 -36.25257 -33.98851 -32.63892 -31.16898 -30.40706 -30.18889 -28.85453 -27.42446 -26.19186 -25.60420 -23.88304 -22.87569 -22.26426 -21.51041 -20.19371 -19.77205 -18.23860 -17.74490 -16.82537 -16.68828 -16.47353 -15.67895 -15.55373 -15.44969 -15.14403 -14.94895 -14.77617 -14.24991 -13.65391 -13.61900 -13.32951 -13.14226 -12.98052 -12.79927 -12.44553 -12.30181 -12.14405 -11.95103 -11.49890 -11.43389 -11.36329 -11.31611 -11.09054 -10.82519 -10.77110 -10.55798 -10.22412 -9.98304 -9.84787 -9.69397 -9.43049 -8.64330 -8.58533 -8.37098 -7.83881 -6.74354 -5.71964 -3.18270 0.86565 1.27457 1.93034 2.64990 3.01751 3.41210 3.46606 3.46797 3.53623 3.70797 3.98218 4.44713 4.52078 4.67080 4.73856 4.89711 4.92019 5.06661 5.22605 5.25764 5.30912 5.33472 5.43508 5.49563 5.55048 5.70948 5.87545 5.97724 6.00695 6.08902 6.11000 6.25198 6.34283 6.47828 6.49792 6.53835 6.58490 6.62324 6.78294 6.89694 7.17519 7.28557 7.29615 7.63021 7.81170 8.11688 8.40078 8.81946 9.23648 9.85871 10.33785 11.33277 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.003460 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.440664 B = 8089.400479 C = 8847.241067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.094 4.094 7 C -0.049 4.049 8 C -0.219 4.219 9 C 0.592 3.408 10 O -0.545 6.545 11 N -0.693 5.693 12 C 0.119 3.881 13 H 0.087 0.913 14 C -0.159 4.159 15 C 0.142 3.858 16 N -0.597 5.597 17 C 0.160 3.840 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.073 3.927 27 O -0.175 6.175 28 C 0.019 3.981 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.391 0.609 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.043 0.957 43 H -0.006 1.006 44 H 0.252 0.748 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -4.440 12.232 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.097 3.903 4 C -0.212 4.212 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.050 4.050 8 C -0.223 4.223 9 C 0.379 3.621 10 O -0.424 6.424 11 N -0.342 5.342 12 C 0.011 3.989 13 H 0.105 0.895 14 C -0.218 4.218 15 C 0.014 3.986 16 N -0.319 5.319 17 C 0.015 3.985 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.004 3.996 27 O -0.074 6.074 28 C -0.028 4.028 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.013 0.987 44 H 0.062 0.938 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.263 -4.144 12.057 17.689 hybrid contribution 0.001 0.194 -1.124 1.140 sum -12.261 -3.950 10.933 16.896 Atomic orbital electron populations 1.23075 0.78196 1.04037 1.01434 1.86142 1.21462 1.26220 1.88961 1.17626 0.86513 0.85454 1.00696 1.20901 0.99696 0.91122 1.09496 1.20832 0.94066 0.96949 0.99648 1.20650 0.92709 0.97990 0.99917 1.19233 0.91290 0.92765 1.01748 1.21093 0.93090 0.93610 1.14536 1.16896 0.81815 0.87177 0.76238 1.90723 1.83850 1.16786 1.51023 1.45604 1.04859 1.10035 1.73719 1.21888 0.88970 0.93013 0.94980 0.89472 1.22157 1.01414 1.00824 0.97443 1.21211 0.93505 0.96769 0.87108 1.43865 1.78054 1.09247 1.00720 1.20863 0.97940 0.83207 0.96445 1.19109 1.19174 1.10114 0.90393 0.91497 1.25013 0.96011 0.99096 0.99047 1.70012 1.20987 1.36367 1.27447 0.86357 0.77455 0.79451 0.83380 1.21127 1.21707 1.20938 1.24518 0.87046 0.92407 0.95645 1.83876 1.13440 1.35213 1.74852 1.18599 0.87544 0.86849 1.09816 0.92547 0.92459 0.88166 0.84401 0.84930 0.84175 0.77473 0.92040 0.92904 0.93198 0.92198 0.94009 0.95106 0.93793 0.98721 0.93785 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.01 10.50 -19.57 -0.21 -4.22 16 3 C 0.14 2.00 6.70 -39.12 -0.26 1.74 16 4 C -0.19 -2.26 9.02 -39.41 -0.36 -2.61 16 5 C -0.10 -1.20 10.03 -39.58 -0.40 -1.60 16 6 C -0.09 -1.49 9.88 -39.36 -0.39 -1.88 16 7 C -0.05 -0.85 6.29 -104.99 -0.66 -1.51 16 8 C -0.22 -3.89 6.31 -103.25 -0.65 -4.54 16 9 C 0.59 11.83 7.77 -12.67 -0.10 11.74 16 10 O -0.54 -12.53 15.94 5.23 0.08 -12.44 16 11 N -0.69 -12.60 4.40 -54.99 -0.24 -12.84 16 12 C 0.12 2.21 2.88 -67.94 -0.20 2.01 16 13 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 14 C -0.16 -2.38 9.48 37.15 0.35 -2.03 16 15 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 16 N -0.60 -14.10 2.78 -181.12 -0.50 -14.60 16 17 C 0.16 3.61 7.61 59.85 0.46 4.07 16 18 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 19 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 20 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 21 N -0.90 -26.00 10.66 55.49 0.59 -25.41 16 22 Si 0.90 22.14 29.57 -169.99 -5.03 17.11 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.07 1.07 11.52 29.95 0.35 1.42 16 27 O -0.17 -2.78 10.53 5.25 0.06 -2.72 16 28 C 0.02 0.31 7.33 -38.46 -0.28 0.02 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 1.13 6.26 -52.49 -0.33 0.80 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 2.30 7.53 -52.49 -0.40 1.91 16 35 H 0.39 6.29 6.10 -40.82 -0.25 6.04 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 40 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 41 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 42 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 43 H -0.01 -0.11 7.84 -51.93 -0.41 -0.51 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.22 2.33 7.41 -52.49 -0.39 1.94 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.44 375.35 -7.17 -41.61 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.18 Total: 4.14 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.40 Total: 3.71 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.15 Total: -52.85 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.07 Total: -19.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.44 -7.17 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.412 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds