Wall clock time and date at job start Tue Mar 31 2020 16:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 116.99989 * 2 1 4 4 O 1.20827 * 120.00315 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47603 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47309 * 54.99809 * 6 5 3 8 8 N 1.46506 * 109.46999 * 295.00154 * 6 5 3 9 9 C 1.34776 * 119.99858 * 154.99904 * 8 6 5 10 10 O 1.21586 * 119.99986 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99677 * 180.27260 * 9 8 6 12 12 C 1.39956 * 120.00044 * 174.56969 * 11 9 8 13 13 C 1.39288 * 119.94838 * 145.76882 * 12 11 9 14 14 C 1.38491 * 120.43096 * 179.97438 * 13 12 11 15 15 C 1.37676 * 120.31845 * 0.02562 * 14 13 12 16 16 C 1.40744 * 119.88803 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.20915 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99726 * 205.17677 * 17 16 15 19 19 C 1.39930 * 120.00294 * 25.18051 * 17 16 15 20 20 N 1.30831 * 120.00085 * 16.77320 * 19 17 16 21 21 Si 1.86802 * 120.00153 * 196.78152 * 19 17 16 22 22 H 1.48501 * 109.46948 * 89.99439 * 21 19 17 23 23 H 1.48491 * 109.47149 * 209.99733 * 21 19 17 24 24 H 1.48498 * 109.46822 * 329.99846 * 21 19 17 25 25 C 1.38231 * 119.94649 * 325.50124 * 12 11 9 26 26 C 1.53000 * 109.47274 * 174.99970 * 6 5 3 27 27 C 1.52999 * 117.50091 * 248.74594 * 26 6 5 28 28 C 1.52999 * 117.50021 * 180.08496 * 26 6 5 29 29 H 1.09001 * 109.47583 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47000 * 300.00058 * 1 2 3 31 31 H 1.08999 * 109.47558 * 59.99107 * 1 2 3 32 32 H 1.09004 * 109.47186 * 60.00001 * 5 3 2 33 33 H 1.09006 * 109.46815 * 300.00604 * 5 3 2 34 34 H 0.96994 * 119.99631 * 334.99458 * 8 6 5 35 35 H 0.97000 * 120.00707 * 354.57724 * 11 9 8 36 36 H 1.08005 * 119.78366 * 359.96374 * 13 12 11 37 37 H 1.08000 * 119.83917 * 180.02562 * 14 13 12 38 38 H 1.08008 * 120.05611 * 179.97438 * 15 14 13 39 39 H 0.96998 * 119.99764 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.16283 * 0.02562 * 25 12 11 41 41 H 1.08996 * 115.55249 * 34.42038 * 26 6 5 42 42 H 1.09003 * 117.49969 * 0.02562 * 27 26 6 43 43 H 1.08997 * 117.49795 * 145.02194 * 27 26 6 44 44 H 1.08997 * 117.50569 * 214.98328 * 28 26 6 45 45 H 1.09007 * 117.49637 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 1 3.5383 3.2570 0.8425 8 7 3.5783 3.3766 -1.2511 9 6 3.3816 4.7091 -1.2979 10 8 3.5537 5.3844 -0.3015 11 7 2.9882 5.2921 -2.4475 12 6 2.6741 6.6558 -2.4688 13 6 2.9575 7.4171 -3.6003 14 6 2.6504 8.7671 -3.6324 15 6 2.0617 9.3720 -2.5448 16 6 1.7705 8.6158 -1.3940 17 6 1.1663 9.2303 -0.2729 18 1 1.3033 8.8098 0.7124 19 6 0.3910 10.3831 -0.4400 20 7 -0.0495 10.7086 -1.6281 21 14 -0.0148 11.4575 1.0333 22 1 1.0393 12.4905 1.1979 23 1 -1.3266 12.1188 0.8172 24 1 -0.0795 10.6171 2.2559 25 6 2.0781 7.2439 -1.3689 26 6 5.5229 2.8234 0.1253 27 6 6.0957 3.3826 1.4292 28 6 6.1565 4.2159 0.1466 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 3.4407 2.8378 -2.0458 35 1 2.9226 4.7667 -3.2602 36 1 3.4198 6.9514 -4.4582 37 1 2.8740 9.3482 -4.5149 38 1 1.8244 10.4253 -2.5742 39 1 -0.5873 11.5076 -1.7438 40 1 1.8544 6.6537 -0.4925 41 1 6.0785 2.0253 -0.3670 42 1 5.3877 3.6921 2.1981 43 1 7.0282 2.9526 1.7945 44 1 7.1290 4.3338 -0.3313 45 1 5.4885 5.0740 0.0710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836762167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:37 Heat of formation + Delta-G solvation = -63.835227 kcal Electronic energy + Delta-G solvation = -28457.902950 eV Core-core repulsion = 24441.418502 eV Total energy + Delta-G solvation = -4016.484448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.82086 -39.89227 -38.04248 -36.82159 -36.57121 -34.33046 -34.19732 -32.91083 -31.25673 -29.71381 -28.25282 -27.52215 -25.22106 -24.86138 -22.27612 -21.86623 -21.11321 -20.78963 -20.32109 -19.97442 -18.00050 -17.70575 -17.50648 -16.78963 -16.62902 -16.03424 -15.47305 -15.37957 -14.81546 -14.58127 -14.41110 -13.98609 -13.91420 -13.62656 -13.36704 -12.93125 -12.80577 -12.58729 -12.27302 -12.04013 -12.01008 -11.69568 -11.55739 -11.33736 -11.07342 -11.05448 -10.99000 -10.77880 -10.65598 -10.38472 -10.31571 -10.15973 -10.05727 -9.58097 -9.36767 -9.04088 -8.89850 -8.71866 -7.34092 -6.78277 -6.60828 -4.23844 2.05469 2.45911 2.81158 2.93581 3.10555 3.14987 3.20458 3.29761 3.79790 3.94837 4.04078 4.32722 4.48522 4.64549 4.74857 4.81748 4.89771 4.96384 4.98776 5.07856 5.15930 5.18064 5.31115 5.35205 5.72057 5.78252 5.83714 6.03079 6.16550 6.20347 6.32979 6.49358 6.54712 6.68897 6.89173 6.94620 7.14545 7.20816 7.34708 7.45760 7.58915 7.79892 7.94840 8.10108 8.21784 8.35849 8.56502 8.77128 9.01232 9.08326 9.18882 10.31003 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003146 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.213871 B = 8897.717251 C = 9447.656294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.449 3.551 4 O -0.481 6.481 5 C -0.117 4.117 6 C 0.207 3.793 7 H 0.100 0.900 8 N -0.738 5.738 9 C 0.709 3.291 10 O -0.563 6.563 11 N -0.682 5.682 12 C 0.171 3.829 13 C -0.264 4.264 14 C -0.093 4.093 15 C -0.174 4.174 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.797 5.797 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.207 4.207 26 C -0.176 4.176 27 C -0.172 4.172 28 C -0.175 4.175 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.388 0.612 35 H 0.392 0.608 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.278 0.722 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -20.603 0.869 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.290 3.710 4 O -0.366 6.366 5 C -0.155 4.155 6 C 0.101 3.899 7 H 0.118 0.882 8 N -0.394 5.394 9 C 0.410 3.590 10 O -0.439 6.439 11 N -0.328 5.328 12 C 0.079 3.921 13 C -0.285 4.285 14 C -0.112 4.112 15 C -0.194 4.194 16 C 0.117 3.883 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.423 5.423 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.228 4.228 26 C -0.196 4.196 27 C -0.209 4.209 28 C -0.212 4.212 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.221 0.779 35 H 0.225 0.775 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.158 -19.523 1.707 20.542 hybrid contribution -0.541 -0.141 -0.340 0.654 sum 5.617 -19.664 1.367 20.496 Atomic orbital electron populations 1.23255 0.76214 1.03482 1.02853 1.86476 1.23548 1.33696 1.84552 1.23736 0.92156 0.81569 0.73508 1.90824 1.66801 1.35886 1.43074 1.21713 0.88038 0.99009 1.06772 1.20058 0.91623 0.89619 0.88567 0.88221 1.45010 1.75000 1.06505 1.12842 1.15788 0.77715 0.81457 0.84042 1.90886 1.56911 1.62156 1.33922 1.42562 1.70359 1.09812 1.10026 1.17209 0.98345 0.80145 0.96432 1.20000 1.15424 0.94802 0.98311 1.20428 0.99636 0.93562 0.97539 1.21325 1.03616 1.00124 0.94365 1.17486 0.88345 0.89812 0.92620 1.19588 1.26414 1.07762 0.95049 0.90424 1.25883 0.94034 0.97287 0.96886 1.69838 1.25864 1.22988 1.23638 0.86326 0.78102 0.80180 0.82179 1.19315 1.20433 1.18636 1.21023 1.08102 0.95186 0.98532 1.22622 0.94678 0.99125 1.03174 1.22936 1.02340 1.04337 0.91308 1.23354 1.02340 0.95555 0.99919 0.88228 0.91809 0.91808 0.87207 0.86036 0.77924 0.77513 0.89499 0.89187 0.86418 0.91080 0.87445 0.87905 0.88599 0.89117 0.89640 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -3.56 10.56 -39.23 -0.41 -3.97 16 3 C 0.45 5.00 7.82 36.01 0.28 5.28 16 4 O -0.48 -7.53 15.10 -18.75 -0.28 -7.82 16 5 C -0.12 -0.93 5.34 -27.89 -0.15 -1.07 16 6 C 0.21 2.42 1.83 -67.93 -0.12 2.29 16 7 H 0.10 1.51 7.15 -51.93 -0.37 1.14 16 8 N -0.74 -9.85 4.20 -58.68 -0.25 -10.10 16 9 C 0.71 13.24 7.62 -86.92 -0.66 12.57 16 10 O -0.56 -12.82 11.12 5.29 0.06 -12.76 16 11 N -0.68 -12.86 5.34 -14.27 -0.08 -12.94 16 12 C 0.17 4.04 6.25 -83.76 -0.52 3.52 16 13 C -0.26 -6.02 9.97 -39.10 -0.39 -6.41 16 14 C -0.09 -2.24 10.02 -39.69 -0.40 -2.63 16 15 C -0.17 -4.74 8.69 -38.84 -0.34 -5.07 16 16 C 0.12 3.43 5.57 -106.85 -0.59 2.84 16 17 C -0.46 -13.07 9.05 -37.74 -0.34 -13.41 16 18 H 0.08 2.20 7.90 -52.49 -0.41 1.78 16 19 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 20 N -0.80 -21.44 10.94 55.55 0.61 -20.83 16 21 Si 0.91 19.78 29.59 -169.99 -5.03 14.75 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 25 C -0.21 -5.61 8.39 -38.69 -0.32 -5.93 16 26 C -0.18 -1.85 5.36 -90.62 -0.49 -2.33 16 27 C -0.17 -1.88 10.18 -26.69 -0.27 -2.15 16 28 C -0.17 -2.36 9.74 -26.69 -0.26 -2.62 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.02 8.62 -40.82 -0.35 3.66 16 35 H 0.39 5.84 8.84 -40.82 -0.36 5.48 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.27 6.17 -52.48 -0.32 2.94 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 40 H 0.11 3.07 6.48 -52.48 -0.34 2.73 16 41 H 0.10 0.84 8.11 -51.93 -0.42 0.41 16 42 H 0.10 1.13 8.05 -51.93 -0.42 0.72 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.13 2.29 5.02 -51.93 -0.26 2.03 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -34.55 377.44 -9.50 -44.05 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -6.20 Total: 15.77 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -3.60 Total: -11.85 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.28 Total: -43.86 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.64 Total: -24.55 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.55 -9.50 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836762167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.783 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds