Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48507 * 109.47164 * 270.00304 * 3 2 1 5 5 H 1.48503 * 109.47106 * 30.00364 * 3 2 1 6 6 H 1.48495 * 109.47186 * 150.00207 * 3 2 1 7 7 C 1.38953 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00445 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99470 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00221 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47120 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99814 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47082 * 184.90606 * 14 13 12 16 16 H 1.09000 * 109.99157 * 55.56759 * 15 14 13 17 17 C 1.54316 * 109.88436 * 294.47206 * 15 14 13 18 18 C 1.55158 * 102.94458 * 218.38791 * 17 15 14 19 19 C 1.54913 * 101.57920 * 35.49686 * 18 17 15 20 20 N 1.47022 * 109.88048 * 176.65934 * 15 14 13 21 21 C 1.34772 * 125.64928 * 298.32234 * 20 15 14 22 22 O 1.21514 * 120.00274 * 4.47288 * 21 20 15 23 23 C 1.48177 * 119.99640 * 184.46606 * 21 20 15 24 24 C 1.39308 * 119.71781 * 179.73044 * 23 21 20 25 25 C 1.38591 * 119.05418 * 179.71155 * 24 23 21 26 26 C 1.38622 * 118.49064 * 0.55316 * 25 24 23 27 27 C 1.38557 * 119.35114 * 359.72713 * 26 25 24 28 28 N 1.31527 * 120.90538 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99552 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47307 * 60.00222 * 12 10 9 32 32 H 1.08998 * 109.47742 * 300.00291 * 12 10 9 33 33 H 1.00896 * 110.99425 * 56.05129 * 13 12 10 34 34 H 1.09008 * 109.47042 * 64.91075 * 14 13 12 35 35 H 1.09000 * 109.47795 * 304.91104 * 14 13 12 36 36 H 1.09005 * 110.72001 * 336.75230 * 17 15 14 37 37 H 1.09005 * 110.71952 * 100.02270 * 17 15 14 38 38 H 1.09000 * 111.00799 * 153.57356 * 18 17 15 39 39 H 1.09004 * 111.00012 * 277.42849 * 18 17 15 40 40 H 1.08996 * 110.36832 * 204.15131 * 19 18 17 41 41 H 1.09008 * 110.36304 * 81.83174 * 19 18 17 42 42 H 1.08003 * 120.47393 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.75699 * 180.28622 * 25 24 23 44 44 H 1.08002 * 120.32702 * 179.75282 * 26 25 24 45 45 H 1.08006 * 119.55204 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2437 -4.8629 -0.0032 13 7 2.1983 -5.9795 -0.0037 14 6 1.4979 -7.2708 -0.0037 15 6 2.5182 -8.4044 0.1192 16 1 3.1329 -8.2579 1.0073 17 6 3.4128 -8.4439 -1.1377 18 6 3.6017 -9.9644 -1.3822 19 6 2.2212 -10.5220 -0.9543 20 7 1.8222 -9.6969 0.2004 21 6 0.9626 -10.0665 1.1704 22 8 0.6440 -9.2737 2.0344 23 6 0.4060 -11.4397 1.1832 24 6 -0.4777 -11.8173 2.1917 25 6 -0.9947 -13.1031 2.1869 26 6 -0.6008 -13.9705 1.1799 27 6 0.2867 -13.5289 0.2119 28 7 0.7576 -12.3011 0.2367 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6167 -4.9201 -0.8930 32 1 0.6173 -4.9213 0.8869 33 1 2.8331 -5.9128 0.7777 34 1 0.9413 -7.3823 -0.9343 35 1 0.8080 -7.3101 0.8392 36 1 2.9094 -7.9767 -1.9842 37 1 4.3714 -7.9624 -0.9440 38 1 3.7968 -10.1696 -2.4348 39 1 4.3969 -10.3653 -0.7536 40 1 2.3089 -11.5681 -0.6609 41 1 1.5005 -10.4137 -1.7649 42 1 -0.7593 -11.1166 2.9639 43 1 -1.6855 -13.4236 2.9529 44 1 -0.9822 -14.9805 1.1499 45 1 0.5956 -14.2018 -0.5745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269988708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = -17.025693 kcal Electronic energy + Delta-G solvation = -27520.821999 eV Core-core repulsion = 23538.660116 eV Total energy + Delta-G solvation = -3982.161883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09380 -39.69020 -38.20517 -37.58522 -35.18439 -33.78004 -33.24547 -32.05875 -31.30672 -31.17896 -30.03413 -26.69565 -25.55915 -24.53932 -23.94932 -23.19877 -22.36913 -21.21375 -19.88442 -19.10504 -17.88761 -17.61145 -17.32834 -16.56285 -16.29340 -15.96915 -15.53633 -15.14014 -15.11134 -14.79501 -14.46276 -14.24492 -13.92099 -13.81027 -13.69277 -13.46076 -13.38330 -13.20932 -12.81101 -12.51876 -12.20890 -12.17644 -11.62011 -11.54779 -11.43632 -11.31790 -11.02961 -10.81014 -10.74802 -10.44466 -10.38532 -10.35420 -10.16790 -9.68929 -9.66015 -9.45559 -8.76435 -8.36268 -7.96591 -7.89409 -6.36368 -3.77009 0.23473 0.73851 2.46537 2.65611 3.21751 3.29767 3.36025 3.47511 3.68573 3.97862 4.16391 4.24125 4.33728 4.46112 4.51780 4.57686 4.61197 4.65688 4.85834 4.93519 5.11356 5.22628 5.25445 5.29967 5.30707 5.42937 5.49407 5.62839 5.68649 5.73441 5.84207 5.88019 5.92764 5.96958 6.03883 6.08479 6.12238 6.25935 6.31939 6.39417 7.20399 7.27905 7.35994 7.60231 7.73513 7.93406 8.12056 8.67288 9.23265 9.60514 10.12171 10.81522 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.002027 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.521145 B =13807.465095 C =14661.782438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.020 3.980 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.048 3.952 15 C 0.138 3.862 16 H 0.077 0.923 17 C -0.114 4.114 18 C -0.141 4.141 19 C 0.097 3.903 20 N -0.593 5.593 21 C 0.580 3.420 22 O -0.529 6.529 23 C 0.086 3.914 24 C -0.111 4.111 25 C -0.080 4.080 26 C -0.153 4.153 27 C 0.094 3.906 28 N -0.454 5.454 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.348 0.652 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -31.348 -0.191 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.296 5.296 14 C -0.082 4.082 15 C 0.035 3.965 16 H 0.095 0.905 17 C -0.152 4.152 18 C -0.179 4.179 19 C -0.025 4.025 20 N -0.325 5.325 21 C 0.367 3.633 22 O -0.405 6.405 23 C -0.052 4.052 24 C -0.132 4.132 25 C -0.106 4.106 26 C -0.173 4.173 27 C -0.065 4.065 28 N -0.166 5.166 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.088 -30.443 -0.979 30.478 hybrid contribution -1.327 0.475 1.488 2.050 sum -2.415 -29.967 0.509 30.069 Atomic orbital electron populations 1.69622 1.05926 1.28077 1.50773 1.25271 0.95647 0.99720 0.97451 0.85848 0.79199 0.80818 0.78349 1.20427 1.20982 1.19444 1.19705 0.93363 0.82250 1.47431 0.87923 1.41864 1.09216 1.04596 1.64492 1.19803 0.88365 0.84705 0.84263 1.90512 1.13744 1.87104 1.55364 1.21655 0.94355 0.90822 1.01246 1.60089 1.18759 0.99626 1.51079 1.22307 0.95709 0.88740 1.01481 1.21636 0.93002 0.82197 0.99653 0.90498 1.22603 1.00234 0.95484 0.96873 1.22911 0.96826 0.96166 1.02016 1.22787 0.95091 0.97296 0.87369 1.48337 1.43173 1.16657 1.24327 1.17549 0.78851 0.85784 0.81161 1.90817 1.59618 1.52135 1.37952 1.21147 0.96868 0.94132 0.93061 1.22165 0.95260 0.97145 0.98651 1.21668 0.97993 0.92882 0.98082 1.22393 0.98304 1.01199 0.95364 1.22913 0.93658 0.92271 0.97681 1.67811 1.22416 1.03379 1.22992 0.91928 0.77456 0.89709 0.93807 0.83276 0.91169 0.93720 0.89787 0.89519 0.89897 0.90950 0.87128 0.91637 0.83312 0.83978 0.84216 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.05 55.50 0.72 -24.50 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.90 5.29 -10.97 -0.06 -14.96 16 10 C 0.44 10.95 7.82 -10.99 -0.09 10.86 16 11 O -0.58 -16.30 15.78 5.55 0.09 -16.21 16 12 C 0.05 1.00 6.16 -4.98 -0.03 0.97 16 13 N -0.66 -11.60 5.92 -115.05 -0.68 -12.28 16 14 C 0.05 0.72 5.08 -3.82 -0.02 0.70 16 15 C 0.14 1.78 3.04 -66.95 -0.20 1.58 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.11 -1.25 6.25 -24.90 -0.16 -1.40 16 18 C -0.14 -1.19 7.09 -24.58 -0.17 -1.36 16 19 C 0.10 0.91 6.12 -2.53 -0.02 0.89 16 20 N -0.59 -7.18 3.06 -164.00 -0.50 -7.68 16 21 C 0.58 7.77 7.66 -12.18 -0.09 7.68 16 22 O -0.53 -8.66 15.15 5.35 0.08 -8.58 16 23 C 0.09 0.92 6.72 -83.01 -0.56 0.36 16 24 C -0.11 -0.99 9.63 -39.05 -0.38 -1.36 16 25 C -0.08 -0.47 10.17 -39.31 -0.40 -0.87 16 26 C -0.15 -0.73 10.11 -39.32 -0.40 -1.13 16 27 C 0.09 0.56 11.18 -17.56 -0.20 0.36 16 28 N -0.45 -4.05 6.54 -9.79 -0.06 -4.11 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.35 6.33 8.36 -39.29 -0.33 6.00 16 34 H 0.07 1.03 8.06 -51.92 -0.42 0.61 16 35 H 0.04 0.75 6.60 -51.93 -0.34 0.40 16 36 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.97 5.60 -51.93 -0.29 0.68 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.15 1.32 7.64 -52.48 -0.40 0.92 16 43 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 44 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 45 H 0.16 0.47 8.06 -52.48 -0.42 0.04 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.57 376.45 -8.96 -43.53 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.25 Total: 13.54 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.95 Total: 9.05 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.58 Total: -63.53 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.57 -8.96 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269988708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.502 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds