Wall clock time and date at job start Tue Mar 31 2020 17:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48507 * 109.47164 * 270.00304 * 3 2 1 5 5 H 1.48503 * 109.47106 * 30.00364 * 3 2 1 6 6 H 1.48495 * 109.47186 * 150.00207 * 3 2 1 7 7 C 1.38953 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00445 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99470 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00221 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47120 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99814 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47082 * 184.90606 * 14 13 12 16 16 H 1.09000 * 109.99157 * 55.56759 * 15 14 13 17 17 C 1.54316 * 109.88436 * 294.47206 * 15 14 13 18 18 C 1.55158 * 102.94458 * 218.38791 * 17 15 14 19 19 C 1.54913 * 101.57920 * 35.49686 * 18 17 15 20 20 N 1.47022 * 109.88048 * 176.65934 * 15 14 13 21 21 C 1.34772 * 125.64928 * 298.32234 * 20 15 14 22 22 O 1.21514 * 120.00274 * 4.47288 * 21 20 15 23 23 C 1.48177 * 119.99640 * 184.46606 * 21 20 15 24 24 C 1.39308 * 119.71781 * 179.73044 * 23 21 20 25 25 C 1.38591 * 119.05418 * 179.71155 * 24 23 21 26 26 C 1.38622 * 118.49064 * 0.55316 * 25 24 23 27 27 C 1.38557 * 119.35114 * 359.72713 * 26 25 24 28 28 N 1.31527 * 120.90538 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99552 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47307 * 60.00222 * 12 10 9 32 32 H 1.08998 * 109.47742 * 300.00291 * 12 10 9 33 33 H 1.00896 * 110.99425 * 56.05129 * 13 12 10 34 34 H 1.09008 * 109.47042 * 64.91075 * 14 13 12 35 35 H 1.09000 * 109.47795 * 304.91104 * 14 13 12 36 36 H 1.09005 * 110.72001 * 336.75230 * 17 15 14 37 37 H 1.09005 * 110.71952 * 100.02270 * 17 15 14 38 38 H 1.09000 * 111.00799 * 153.57356 * 18 17 15 39 39 H 1.09004 * 111.00012 * 277.42849 * 18 17 15 40 40 H 1.08996 * 110.36832 * 204.15131 * 19 18 17 41 41 H 1.09008 * 110.36304 * 81.83174 * 19 18 17 42 42 H 1.08003 * 120.47393 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.75699 * 180.28622 * 25 24 23 44 44 H 1.08002 * 120.32702 * 179.75282 * 26 25 24 45 45 H 1.08006 * 119.55204 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2437 -4.8629 -0.0032 13 7 2.1983 -5.9795 -0.0037 14 6 1.4979 -7.2708 -0.0037 15 6 2.5182 -8.4044 0.1192 16 1 3.1329 -8.2579 1.0073 17 6 3.4128 -8.4439 -1.1377 18 6 3.6017 -9.9644 -1.3822 19 6 2.2212 -10.5220 -0.9543 20 7 1.8222 -9.6969 0.2004 21 6 0.9626 -10.0665 1.1704 22 8 0.6440 -9.2737 2.0344 23 6 0.4060 -11.4397 1.1832 24 6 -0.4777 -11.8173 2.1917 25 6 -0.9947 -13.1031 2.1869 26 6 -0.6008 -13.9705 1.1799 27 6 0.2867 -13.5289 0.2119 28 7 0.7576 -12.3011 0.2367 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6167 -4.9201 -0.8930 32 1 0.6173 -4.9213 0.8869 33 1 2.8331 -5.9128 0.7777 34 1 0.9413 -7.3823 -0.9343 35 1 0.8080 -7.3101 0.8392 36 1 2.9094 -7.9767 -1.9842 37 1 4.3714 -7.9624 -0.9440 38 1 3.7968 -10.1696 -2.4348 39 1 4.3969 -10.3653 -0.7536 40 1 2.3089 -11.5681 -0.6609 41 1 1.5005 -10.4137 -1.7649 42 1 -0.7593 -11.1166 2.9639 43 1 -1.6855 -13.4236 2.9529 44 1 -0.9822 -14.9805 1.1499 45 1 0.5956 -14.2018 -0.5745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269988708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:19 Heat of formation + Delta-G solvation = -42.247222 kcal Electronic energy + Delta-G solvation = -27521.915686 eV Core-core repulsion = 23538.660116 eV Total energy + Delta-G solvation = -3983.255570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84952 -40.50993 -40.10526 -38.63040 -36.66323 -35.81326 -33.86325 -33.29804 -32.77346 -32.03022 -31.20763 -28.26584 -26.51713 -26.07959 -24.50917 -24.40131 -23.31923 -22.03698 -21.26908 -20.60647 -19.91646 -18.55900 -18.08813 -17.86112 -17.12367 -17.00581 -16.79345 -16.52667 -16.29761 -15.99419 -15.86637 -15.47357 -15.21500 -15.02345 -14.93955 -14.52323 -14.26438 -14.14635 -13.93141 -13.71142 -13.49786 -13.34931 -13.22081 -12.90312 -12.86216 -12.70779 -12.43523 -12.12677 -12.04309 -11.86105 -11.60143 -11.52578 -11.38413 -10.94783 -10.41156 -10.33998 -10.23838 -10.04359 -9.68308 -9.44644 -8.48215 -5.97599 -0.37837 0.25350 1.37340 1.40721 1.54255 1.64213 1.75436 2.00968 2.28252 2.83626 2.87517 3.06552 3.18231 3.47011 3.61213 3.70494 3.83755 3.87238 3.97472 4.05308 4.09171 4.21948 4.27212 4.29128 4.39387 4.44968 4.47462 4.52463 4.66954 4.76092 4.76373 4.99479 5.06005 5.07080 5.09012 5.17405 5.18230 5.35302 5.39178 5.43181 5.69103 5.77636 6.01934 6.24706 6.38791 6.56833 6.67356 7.00923 7.09577 7.52230 8.06937 8.69369 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.002027 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.521145 B =13807.465095 C =14661.782438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.065 3.935 13 N -0.664 5.664 14 C 0.059 3.941 15 C 0.137 3.863 16 H 0.062 0.938 17 C -0.111 4.111 18 C -0.128 4.128 19 C 0.098 3.902 20 N -0.593 5.593 21 C 0.570 3.430 22 O -0.575 6.575 23 C 0.056 3.944 24 C -0.126 4.126 25 C -0.079 4.079 26 C -0.134 4.134 27 C 0.090 3.910 28 N -0.467 5.467 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.135 0.865 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -33.878 -1.261 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.505 6.505 12 C -0.068 4.068 13 N -0.297 5.297 14 C -0.071 4.071 15 C 0.034 3.966 16 H 0.081 0.919 17 C -0.149 4.149 18 C -0.166 4.166 19 C -0.023 4.023 20 N -0.324 5.324 21 C 0.359 3.641 22 O -0.455 6.455 23 C -0.081 4.081 24 C -0.148 4.148 25 C -0.105 4.105 26 C -0.154 4.154 27 C -0.070 4.070 28 N -0.179 5.179 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.188 0.812 44 H 0.197 0.803 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.634 -33.000 -2.074 33.106 hybrid contribution -1.221 1.110 1.819 2.456 sum -2.855 -31.891 -0.255 32.019 Atomic orbital electron populations 1.69689 1.06932 1.29369 1.50226 1.26121 0.96606 1.02611 0.96183 0.84870 0.77818 0.76546 0.78732 1.19459 1.19511 1.19689 1.19702 0.92786 0.83896 1.50004 0.90106 1.41930 1.09329 1.04740 1.64957 1.20675 0.88217 0.85914 0.82403 1.90479 1.15563 1.87879 1.56599 1.21521 0.94069 0.88472 1.02691 1.60109 1.18573 1.00162 1.50808 1.22241 0.95821 0.88198 1.00807 1.21572 0.92638 0.82221 1.00204 0.91942 1.22546 0.99334 0.97594 0.95394 1.22907 0.96396 0.93679 1.03625 1.22944 0.95576 0.97434 0.86367 1.48469 1.42661 1.16471 1.24832 1.18156 0.78526 0.86858 0.80606 1.90769 1.61308 1.53736 1.39639 1.20799 0.98882 0.93314 0.95072 1.22217 0.95725 0.98603 0.98220 1.22032 0.97840 0.91522 0.99103 1.22868 0.96440 1.02489 0.93583 1.23594 0.93245 0.91464 0.98692 1.67712 1.23130 1.04453 1.22618 0.91255 0.77054 0.87781 0.92602 0.83906 0.90593 0.95641 0.90320 0.89899 0.87477 0.90344 0.86156 0.91251 0.84703 0.81181 0.80251 0.78552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.33 13.05 21.66 0.28 -51.05 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 3 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.33 -19.66 9.68 84.04 0.81 -18.85 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.57 -30.96 5.29 -307.00 -1.62 -32.58 16 10 C 0.44 22.34 7.82 87.66 0.69 23.02 16 11 O -0.62 -35.72 15.78 -3.06 -0.05 -35.77 16 12 C 0.07 2.54 6.16 85.55 0.53 3.07 16 13 N -0.66 -23.88 5.92 -517.91 -3.07 -26.95 16 14 C 0.06 1.83 5.08 86.31 0.44 2.27 16 15 C 0.14 3.67 3.04 45.34 0.14 3.80 16 16 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.11 -2.39 6.25 31.78 0.20 -2.19 16 18 C -0.13 -1.94 7.09 31.99 0.23 -1.72 16 19 C 0.10 1.73 6.12 86.86 0.53 2.26 16 20 N -0.59 -14.72 3.06 -791.06 -2.42 -17.15 16 21 C 0.57 16.15 7.66 86.89 0.67 16.81 16 22 O -0.57 -20.38 15.15 -3.76 -0.06 -20.44 16 23 C 0.06 1.21 6.72 41.91 0.28 1.49 16 24 C -0.13 -2.26 9.63 22.61 0.22 -2.04 16 25 C -0.08 -0.75 10.17 22.45 0.23 -0.52 16 26 C -0.13 -0.76 10.11 22.44 0.23 -0.54 16 27 C 0.09 0.77 11.18 84.81 0.95 1.72 16 28 N -0.47 -7.65 6.54 -184.90 -1.21 -8.86 16 29 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.40 20.46 7.90 -92.70 -0.73 19.73 16 31 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.34 13.00 8.36 -89.70 -0.75 12.25 16 34 H 0.08 2.25 8.06 -2.38 -0.02 2.23 16 35 H 0.03 0.90 6.60 -2.39 -0.02 0.88 16 36 H 0.08 1.79 7.79 -2.38 -0.02 1.77 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 1.93 5.60 -2.39 -0.01 1.92 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.14 2.66 7.64 -2.91 -0.02 2.63 16 43 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.18 -0.37 8.06 -2.91 -0.02 -0.40 16 45 H 0.20 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -78.02 376.45 0.03 -77.99 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.45 Total: 40.49 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.59 Total: 28.20 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -8.04 Total: -136.58 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.11 Total: -56.21 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.02 0.03 -77.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269988708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.744 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds