Wall clock time and date at job start Tue Mar 31 2020 16:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.50697 * 120.00418 * 2 1 4 4 C 1.52996 * 109.47391 * 95.17584 * 3 2 1 5 5 C 1.50707 * 109.47111 * 184.85951 * 4 3 2 6 6 O 1.20825 * 119.99719 * 0.02562 * 5 4 3 7 7 O 1.34220 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.45205 * 117.00074 * 180.02562 * 7 5 4 9 9 C 1.47102 * 119.99958 * 179.97438 * 2 1 3 10 10 O 1.21612 * 119.99994 * 262.57808 * 9 2 1 11 11 N 1.34776 * 120.00316 * 82.57726 * 9 2 1 12 12 C 1.46502 * 119.99912 * 355.30267 * 11 9 2 13 13 C 1.50699 * 109.47132 * 274.76907 * 12 11 9 14 14 H 1.08002 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00189 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99695 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46983 * 120.00340 * 17 15 13 20 20 H 1.48500 * 109.46983 * 239.99534 * 17 15 13 21 21 C 1.46504 * 120.00103 * 175.29987 * 11 9 2 22 22 C 1.50695 * 109.46750 * 90.00326 * 21 11 9 23 23 C 1.38233 * 119.61893 * 95.02202 * 22 21 11 24 24 C 1.38624 * 119.15959 * 179.74396 * 23 22 21 25 25 C 1.38678 * 118.42285 * 0.47161 * 24 23 22 26 26 C 1.38183 * 119.16066 * 359.50607 * 25 24 23 27 27 N 1.31855 * 119.61653 * 274.99549 * 22 21 11 28 28 H 1.08001 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47378 * 215.18152 * 3 2 1 31 31 H 1.09007 * 109.46650 * 335.17871 * 3 2 1 32 32 H 1.09001 * 109.47174 * 304.85864 * 4 3 2 33 33 H 1.08997 * 109.47143 * 64.86209 * 4 3 2 34 34 H 1.08997 * 109.46893 * 59.99925 * 8 7 5 35 35 H 1.08998 * 109.47089 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46626 * 300.00131 * 8 7 5 37 37 H 1.09005 * 109.46580 * 34.76593 * 12 11 9 38 38 H 1.08990 * 109.47297 * 154.76620 * 12 11 9 39 39 H 0.96999 * 120.00148 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.47007 * 330.00263 * 21 11 9 41 41 H 1.09001 * 109.46594 * 209.99981 * 21 11 9 42 42 H 1.08004 * 120.41826 * 359.94854 * 23 22 21 43 43 H 1.08002 * 120.78886 * 180.23022 * 24 23 22 44 44 H 1.08000 * 120.41944 * 179.78566 * 25 24 23 45 45 H 1.07996 * 119.61694 * 180.25521 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.4512 1.6816 1.4366 5 6 3.0988 3.0425 1.4490 6 8 3.2501 3.6489 0.4150 7 8 3.5064 3.5810 2.6089 8 6 4.1212 4.8950 2.5456 9 6 2.0654 -1.2739 0.0006 10 8 2.4873 -1.7321 1.0451 11 7 2.2718 -1.9335 -1.1565 12 6 1.6765 -1.4363 -2.3993 13 6 0.2686 -1.9586 -2.5261 14 1 -0.1415 -2.5975 -1.7579 15 6 -0.4959 -1.6210 -3.6227 16 7 0.0034 -0.8426 -4.5578 17 14 -2.2408 -2.2691 -3.7801 18 1 -2.5620 -3.1166 -2.6039 19 1 -3.1890 -1.1279 -3.8411 20 1 -2.3586 -3.0773 -5.0203 21 6 3.0915 -3.1477 -1.1715 22 6 2.2134 -4.3494 -0.9356 23 6 1.7244 -5.0607 -2.0154 24 6 0.9219 -6.1677 -1.7874 25 6 0.6317 -6.5139 -0.4762 26 6 1.1569 -5.7553 0.5524 27 7 1.9208 -4.7106 0.2983 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.9926 1.1997 -0.5921 31 1 1.4574 2.0861 -0.4314 32 1 1.5497 1.7027 2.0488 33 1 3.1465 0.9448 1.8387 34 1 3.4121 5.6079 2.1248 35 1 4.4040 5.2126 3.5492 36 1 5.0092 4.8506 1.9151 37 1 1.6596 -0.3465 -2.3834 38 1 2.2687 -1.7782 -3.2481 39 1 -0.5345 -0.6048 -5.3291 40 1 3.8440 -3.0876 -0.3853 41 1 3.5838 -3.2417 -2.1394 42 1 1.9673 -4.7596 -3.0238 43 1 0.5287 -6.7447 -2.6114 44 1 0.0068 -7.3682 -0.2617 45 1 0.9390 -6.0207 1.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464913708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:54 Heat of formation + Delta-G solvation = -67.508577 kcal Electronic energy + Delta-G solvation = -28678.075920 eV Core-core repulsion = 24661.432184 eV Total energy + Delta-G solvation = -4016.643736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43912 -39.88300 -38.85994 -36.63130 -35.08330 -34.76079 -32.76902 -31.98249 -31.37970 -30.54506 -27.84460 -27.56808 -26.15707 -24.50146 -23.22345 -22.96243 -22.23223 -20.94873 -20.45454 -17.93537 -17.31456 -16.65965 -16.61140 -16.46295 -16.36778 -15.91934 -15.62081 -15.38156 -15.12549 -14.56204 -14.35170 -13.99828 -13.59116 -13.42785 -13.20701 -12.90678 -12.76562 -12.53515 -12.44713 -12.37510 -11.96185 -11.85328 -11.67351 -11.46539 -11.33971 -11.27660 -10.93475 -10.87921 -10.78330 -10.75608 -10.44109 -10.20239 -9.75030 -9.43259 -9.09950 -8.95188 -8.64092 -8.60914 -8.45532 -7.73439 -6.17544 -4.22484 1.51281 1.74765 2.25622 2.43388 2.84762 3.18423 3.28216 3.31537 3.43484 3.92537 4.30827 4.46852 4.75220 4.79541 4.99391 5.05576 5.14608 5.17210 5.19079 5.20260 5.21542 5.36474 5.42340 5.45693 5.57438 5.60784 5.79302 5.85215 5.94904 6.02685 6.16010 6.19411 6.28695 6.36322 6.41828 6.54593 6.60585 6.71910 6.96151 7.12405 7.14268 7.22363 7.54553 7.77278 7.77706 8.08204 8.30795 8.51675 8.81211 9.04604 9.44009 10.89450 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003841 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.141223 B = 7287.246519 C = 8990.612760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.159 4.159 3 C -0.053 4.053 4 C -0.108 4.108 5 C 0.461 3.539 6 O -0.507 6.507 7 O -0.362 6.362 8 C 0.035 3.965 9 C 0.559 3.441 10 O -0.549 6.549 11 N -0.589 5.589 12 C 0.238 3.762 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.886 3.114 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.170 3.830 22 C 0.125 3.875 23 C -0.135 4.135 24 C -0.084 4.084 25 C -0.182 4.182 26 C 0.087 3.913 27 N -0.458 5.458 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 0.294 8.652 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.304 3.696 6 O -0.395 6.395 7 O -0.279 6.279 8 C -0.059 4.059 9 C 0.347 3.653 10 O -0.428 6.428 11 N -0.319 5.319 12 C 0.119 3.881 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.210 1.210 21 C 0.045 3.955 22 C -0.015 4.015 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.202 4.202 26 C -0.070 4.070 27 N -0.168 5.168 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.995 0.863 9.383 10.665 hybrid contribution -1.689 -0.727 -1.266 2.232 sum 3.306 0.136 8.117 8.766 Atomic orbital electron populations 1.24166 0.94156 1.02295 0.93972 1.21087 0.95474 0.93449 1.06212 1.20224 1.01080 0.93929 0.93822 1.21478 1.02465 0.90019 1.00586 1.24080 0.75452 0.88776 0.81269 1.90676 1.52512 1.62663 1.33620 1.86532 1.71289 1.34463 1.35648 1.23227 0.97807 0.81444 1.03431 1.18419 0.79004 0.84449 0.83420 1.90750 1.51621 1.69151 1.31255 1.48234 1.49767 1.23752 1.10189 1.19469 0.93228 0.95777 0.79641 1.21410 0.97866 1.30598 1.06143 0.92483 1.24853 0.98074 0.94947 0.95577 1.69923 1.37029 1.35558 1.10294 0.86616 0.84982 0.78918 0.78077 1.19817 1.20849 1.20951 1.20134 0.91578 0.81403 1.02340 1.21652 0.96274 0.95325 0.88204 1.21990 0.97747 0.95108 1.00686 1.21495 0.96226 0.96434 0.96854 1.22034 1.02261 1.01865 0.94041 1.22654 0.93999 0.91214 0.99176 1.67585 1.12484 1.13507 1.23176 0.87842 0.87627 0.90474 0.89770 0.87476 0.86980 0.92001 0.88332 0.91988 0.93999 0.94739 0.92693 0.89414 0.89452 0.84650 0.85448 0.85674 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 13.01 28.91 0.38 -1.57 16 2 C -0.16 -2.94 3.22 -102.85 -0.33 -3.27 16 3 C -0.05 -0.84 4.72 -27.89 -0.13 -0.98 16 4 C -0.11 -1.47 5.79 -27.88 -0.16 -1.63 16 5 C 0.46 6.51 7.96 36.01 0.29 6.79 16 6 O -0.51 -8.47 15.67 -18.75 -0.29 -8.76 16 7 O -0.36 -4.51 10.56 -39.23 -0.41 -4.93 16 8 C 0.03 0.32 10.56 101.05 1.07 1.39 16 9 C 0.56 11.63 7.02 -12.66 -0.09 11.54 16 10 O -0.55 -12.38 16.73 5.27 0.09 -12.29 16 11 N -0.59 -12.15 2.45 -177.84 -0.44 -12.58 16 12 C 0.24 5.42 4.97 -5.19 -0.03 5.40 16 13 C -0.52 -12.83 8.25 -34.44 -0.28 -13.11 16 14 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -23.77 13.29 55.43 0.74 -23.04 16 17 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.17 3.13 5.72 -5.19 -0.03 3.10 16 22 C 0.12 2.34 6.36 -82.59 -0.53 1.82 16 23 C -0.13 -2.32 9.72 -39.44 -0.38 -2.71 16 24 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 25 C -0.18 -2.63 10.11 -39.44 -0.40 -3.03 16 26 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 27 N -0.46 -8.86 10.27 -9.47 -0.10 -8.96 16 28 H 0.10 1.58 8.02 -52.49 -0.42 1.16 16 29 H 0.11 2.08 7.89 -52.49 -0.41 1.67 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.33 7.82 -51.93 -0.41 0.92 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 37 H 0.04 1.01 6.98 -51.93 -0.36 0.65 16 38 H 0.03 0.81 7.84 -51.93 -0.41 0.41 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 40 H 0.09 1.62 7.49 -51.93 -0.39 1.23 16 41 H 0.09 1.40 7.76 -51.93 -0.40 1.00 16 42 H 0.14 2.24 8.06 -52.48 -0.42 1.81 16 43 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -31.73 395.03 -7.38 -39.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.57 Total: 5.39 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.32 Total: 4.92 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.20 Total: -44.58 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.62 Total: -25.98 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.73 -7.38 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464913708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.399 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds