Wall clock time and date at job start Tue Mar 31 2020 16:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.50697 * 120.00418 * 2 1 4 4 C 1.52996 * 109.47391 * 95.17584 * 3 2 1 5 5 C 1.50707 * 109.47111 * 184.85951 * 4 3 2 6 6 O 1.20825 * 119.99719 * 0.02562 * 5 4 3 7 7 O 1.34220 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.45205 * 117.00074 * 180.02562 * 7 5 4 9 9 C 1.47102 * 119.99958 * 179.97438 * 2 1 3 10 10 O 1.21612 * 119.99994 * 262.57808 * 9 2 1 11 11 N 1.34776 * 120.00316 * 82.57726 * 9 2 1 12 12 C 1.46502 * 119.99912 * 355.30267 * 11 9 2 13 13 C 1.50699 * 109.47132 * 274.76907 * 12 11 9 14 14 H 1.08002 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00189 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99695 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46983 * 120.00340 * 17 15 13 20 20 H 1.48500 * 109.46983 * 239.99534 * 17 15 13 21 21 C 1.46504 * 120.00103 * 175.29987 * 11 9 2 22 22 C 1.50695 * 109.46750 * 90.00326 * 21 11 9 23 23 C 1.38233 * 119.61893 * 95.02202 * 22 21 11 24 24 C 1.38624 * 119.15959 * 179.74396 * 23 22 21 25 25 C 1.38678 * 118.42285 * 0.47161 * 24 23 22 26 26 C 1.38183 * 119.16066 * 359.50607 * 25 24 23 27 27 N 1.31855 * 119.61653 * 274.99549 * 22 21 11 28 28 H 1.08001 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47378 * 215.18152 * 3 2 1 31 31 H 1.09007 * 109.46650 * 335.17871 * 3 2 1 32 32 H 1.09001 * 109.47174 * 304.85864 * 4 3 2 33 33 H 1.08997 * 109.47143 * 64.86209 * 4 3 2 34 34 H 1.08997 * 109.46893 * 59.99925 * 8 7 5 35 35 H 1.08998 * 109.47089 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46626 * 300.00131 * 8 7 5 37 37 H 1.09005 * 109.46580 * 34.76593 * 12 11 9 38 38 H 1.08990 * 109.47297 * 154.76620 * 12 11 9 39 39 H 0.96999 * 120.00148 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.47007 * 330.00263 * 21 11 9 41 41 H 1.09001 * 109.46594 * 209.99981 * 21 11 9 42 42 H 1.08004 * 120.41826 * 359.94854 * 23 22 21 43 43 H 1.08002 * 120.78886 * 180.23022 * 24 23 22 44 44 H 1.08000 * 120.41944 * 179.78566 * 25 24 23 45 45 H 1.07996 * 119.61694 * 180.25521 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.4512 1.6816 1.4366 5 6 3.0988 3.0425 1.4490 6 8 3.2501 3.6489 0.4150 7 8 3.5064 3.5810 2.6089 8 6 4.1212 4.8950 2.5456 9 6 2.0654 -1.2739 0.0006 10 8 2.4873 -1.7321 1.0451 11 7 2.2718 -1.9335 -1.1565 12 6 1.6765 -1.4363 -2.3993 13 6 0.2686 -1.9586 -2.5261 14 1 -0.1415 -2.5975 -1.7579 15 6 -0.4959 -1.6210 -3.6227 16 7 0.0034 -0.8426 -4.5578 17 14 -2.2408 -2.2691 -3.7801 18 1 -2.5620 -3.1166 -2.6039 19 1 -3.1890 -1.1279 -3.8411 20 1 -2.3586 -3.0773 -5.0203 21 6 3.0915 -3.1477 -1.1715 22 6 2.2134 -4.3494 -0.9356 23 6 1.7244 -5.0607 -2.0154 24 6 0.9219 -6.1677 -1.7874 25 6 0.6317 -6.5139 -0.4762 26 6 1.1569 -5.7553 0.5524 27 7 1.9208 -4.7106 0.2983 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.9926 1.1997 -0.5921 31 1 1.4574 2.0861 -0.4314 32 1 1.5497 1.7027 2.0488 33 1 3.1465 0.9448 1.8387 34 1 3.4121 5.6079 2.1248 35 1 4.4040 5.2126 3.5492 36 1 5.0092 4.8506 1.9151 37 1 1.6596 -0.3465 -2.3834 38 1 2.2687 -1.7782 -3.2481 39 1 -0.5345 -0.6048 -5.3291 40 1 3.8440 -3.0876 -0.3853 41 1 3.5838 -3.2417 -2.1394 42 1 1.9673 -4.7596 -3.0238 43 1 0.5287 -6.7447 -2.6114 44 1 0.0068 -7.3682 -0.2617 45 1 0.9390 -6.0207 1.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464913708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:53 Heat of formation + Delta-G solvation = -84.784736 kcal Electronic energy + Delta-G solvation = -28678.825070 eV Core-core repulsion = 24661.432184 eV Total energy + Delta-G solvation = -4017.392887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56184 -41.25476 -40.35966 -37.71469 -36.73765 -36.18393 -34.61031 -33.29875 -32.75318 -31.83626 -29.38722 -28.68686 -27.69140 -25.70005 -25.00990 -24.27806 -23.67026 -22.26934 -21.65761 -19.37855 -18.64257 -18.43570 -17.78289 -17.71602 -17.51175 -17.33383 -17.11906 -16.83524 -16.48462 -16.26984 -15.72582 -15.37241 -14.80298 -14.68239 -14.47678 -14.32673 -14.08769 -13.96229 -13.76252 -13.59083 -13.50591 -13.35917 -13.12905 -12.88488 -12.80554 -12.67853 -12.61511 -12.48112 -12.09661 -12.04218 -11.78866 -11.65554 -11.58832 -10.76056 -10.65849 -10.54917 -10.29228 -10.07180 -9.84486 -9.42456 -8.13959 -6.23863 0.23997 0.49442 1.04103 1.14762 1.37644 1.43240 1.51163 1.75712 1.84261 2.36566 2.49083 3.09497 3.18236 3.47743 3.70019 3.74499 3.92922 3.98969 4.07227 4.12958 4.26102 4.28465 4.33603 4.34225 4.34781 4.51837 4.61732 4.62310 4.72036 4.75735 4.82644 4.92392 4.92555 4.95894 5.06735 5.27272 5.30166 5.35559 5.36195 5.49713 5.70015 5.72427 5.86929 5.90104 6.14352 6.58143 6.70567 6.87457 7.22203 7.34771 7.48175 8.92397 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003841 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.141223 B = 7287.246519 C = 8990.612760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.167 4.167 3 C -0.045 4.045 4 C -0.101 4.101 5 C 0.468 3.532 6 O -0.538 6.538 7 O -0.364 6.364 8 C 0.027 3.973 9 C 0.553 3.447 10 O -0.570 6.570 11 N -0.590 5.590 12 C 0.255 3.745 13 C -0.510 4.510 14 H 0.041 0.959 15 C 0.031 3.969 16 N -0.918 5.918 17 Si 0.939 3.061 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.166 3.834 22 C 0.102 3.898 23 C -0.149 4.149 24 C -0.087 4.087 25 C -0.170 4.170 26 C 0.073 3.927 27 N -0.495 5.495 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -0.324 9.333 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C -0.083 4.083 4 C -0.138 4.138 5 C 0.313 3.687 6 O -0.428 6.428 7 O -0.280 6.280 8 C -0.066 4.066 9 C 0.342 3.658 10 O -0.451 6.451 11 N -0.320 5.320 12 C 0.135 3.865 13 C -0.549 4.549 14 H 0.059 0.941 15 C -0.169 4.169 16 N -0.557 5.557 17 Si 0.766 3.234 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.042 3.958 22 C -0.036 4.036 23 C -0.170 4.170 24 C -0.113 4.113 25 C -0.189 4.189 26 C -0.085 4.085 27 N -0.205 5.205 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.183 0.817 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.840 0.236 10.078 10.788 hybrid contribution -1.292 -0.591 -1.402 1.996 sum 2.548 -0.354 8.676 9.050 Atomic orbital electron populations 1.24260 0.93974 1.02724 0.93551 1.21189 0.95747 0.93406 1.06647 1.20128 1.00161 0.92684 0.95318 1.21368 1.03347 0.89887 0.99184 1.24024 0.74849 0.88605 0.81256 1.90667 1.53889 1.63512 1.34686 1.86514 1.71060 1.35940 1.34529 1.23560 0.97534 0.79869 1.05664 1.18836 0.78799 0.85094 0.83070 1.90724 1.52688 1.69905 1.31751 1.48214 1.49766 1.24532 1.09486 1.19115 0.92509 0.94726 0.80165 1.21350 0.98417 1.29754 1.05392 0.94083 1.25395 1.00916 0.95195 0.95398 1.70001 1.38215 1.36703 1.10822 0.85786 0.81461 0.78320 0.77805 1.20135 1.20664 1.20484 1.20270 0.91433 0.81000 1.03071 1.21587 0.97390 0.95868 0.88773 1.22090 0.98576 0.96100 1.00209 1.21913 0.95260 0.95753 0.98366 1.22442 1.01263 1.02141 0.93097 1.23178 0.93527 0.90694 1.01053 1.67529 1.14038 1.15242 1.23654 0.84856 0.89698 0.91861 0.89377 0.85406 0.87191 0.91838 0.84917 0.92162 0.95449 0.95677 0.92604 0.90026 0.87750 0.84736 0.82521 0.81727 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.84 13.01 66.65 0.87 -2.97 16 2 C -0.17 -6.20 3.22 -18.70 -0.06 -6.26 16 3 C -0.05 -1.44 4.72 29.85 0.14 -1.30 16 4 C -0.10 -2.68 5.79 29.85 0.17 -2.50 16 5 C 0.47 12.88 7.96 71.24 0.57 13.45 16 6 O -0.54 -17.83 15.67 21.97 0.34 -17.48 16 7 O -0.36 -8.56 10.56 -51.32 -0.54 -9.11 16 8 C 0.03 0.45 10.56 113.37 1.20 1.65 16 9 C 0.55 23.51 7.02 86.57 0.61 24.12 16 10 O -0.57 -26.26 16.73 -4.07 -0.07 -26.33 16 11 N -0.59 -24.96 2.45 -834.80 -2.05 -27.00 16 12 C 0.26 11.85 4.97 85.63 0.43 12.27 16 13 C -0.51 -25.23 8.25 25.60 0.21 -25.02 16 14 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 15 C 0.03 1.57 5.46 84.66 0.46 2.03 16 16 N -0.92 -48.97 13.29 21.45 0.28 -48.68 16 17 Si 0.94 40.94 29.54 68.60 2.03 42.97 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 C 0.17 6.30 5.72 85.63 0.49 6.79 16 22 C 0.10 3.87 6.36 42.55 0.27 4.15 16 23 C -0.15 -5.08 9.72 22.36 0.22 -4.86 16 24 C -0.09 -2.46 10.18 22.47 0.23 -2.23 16 25 C -0.17 -4.43 10.11 22.36 0.23 -4.21 16 26 C 0.07 2.25 11.18 84.67 0.95 3.20 16 27 N -0.49 -19.16 10.27 -183.88 -1.89 -21.05 16 28 H 0.13 3.87 8.02 -2.91 -0.02 3.85 16 29 H 0.08 3.38 7.89 -2.91 -0.02 3.36 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.75 7.82 -2.38 -0.02 2.73 16 32 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 37 H 0.03 1.36 6.98 -2.38 -0.02 1.34 16 38 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 39 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 40 H 0.08 3.14 7.49 -2.39 -0.02 3.12 16 41 H 0.10 3.45 7.76 -2.39 -0.02 3.44 16 42 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 43 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.17 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -68.24 395.03 6.06 -62.18 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.98 Total: 26.20 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.97 Total: 18.29 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.65 Total: -96.73 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.27 Total: -52.91 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -68.24 6.06 -62.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464913708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds