Wall clock time and date at job start Tue Mar 31 2020 16:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47310 * 269.99729 * 3 2 1 5 5 H 1.48500 * 109.47390 * 30.00329 * 3 2 1 6 6 H 1.48504 * 109.47223 * 150.00092 * 3 2 1 7 7 C 1.37878 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47049 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.53912 * 68.37600 * 11 10 9 13 13 O 1.42096 * 110.54365 * 291.62638 * 11 10 9 14 14 N 1.65597 * 104.44853 * 179.97438 * 11 10 9 15 15 C 1.47086 * 120.87859 * 90.00521 * 14 11 10 16 16 C 1.53246 * 108.51814 * 231.16177 * 15 14 11 17 17 N 1.46902 * 109.33711 * 306.16785 * 16 15 14 18 18 C 1.46902 * 110.99497 * 187.25382 * 17 16 15 19 19 C 1.53002 * 109.47015 * 65.70187 * 18 17 16 20 20 H 1.09001 * 110.43026 * 303.90528 * 19 18 17 21 21 C 1.54815 * 110.48627 * 181.21757 * 19 18 17 22 22 C 1.54985 * 102.09111 * 220.44301 * 21 19 18 23 23 O 1.44387 * 103.49425 * 37.02458 * 22 21 19 24 24 C 1.43743 * 106.96811 * 319.93816 * 23 22 21 25 25 C 1.46905 * 111.26950 * 63.11028 * 17 16 15 26 26 C 1.47077 * 120.88533 * 269.97607 * 14 11 10 27 27 H 0.96996 * 120.00519 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46992 * 59.99639 * 9 7 2 29 29 H 1.09008 * 109.47206 * 300.00118 * 9 7 2 30 30 H 1.09000 * 109.46821 * 60.00294 * 10 9 7 31 31 H 1.09000 * 109.47123 * 299.99825 * 10 9 7 32 32 H 1.08995 * 109.62590 * 350.86935 * 15 14 11 33 33 H 1.09001 * 109.62973 * 111.45255 * 15 14 11 34 34 H 1.08998 * 109.49282 * 66.12711 * 16 15 14 35 35 H 1.09001 * 109.48895 * 186.20865 * 16 15 14 36 36 H 1.09001 * 109.46736 * 185.70455 * 18 17 16 37 37 H 1.09002 * 109.47174 * 305.69787 * 18 17 16 38 38 H 1.09007 * 110.90480 * 338.64493 * 21 19 18 39 39 H 1.09000 * 110.90449 * 102.23855 * 21 19 18 40 40 H 1.09005 * 110.61890 * 278.52030 * 22 21 19 41 41 H 1.09001 * 110.75494 * 155.58884 * 22 21 19 42 42 H 1.08996 * 109.88008 * 267.08543 * 24 23 22 43 43 H 1.09008 * 109.99553 * 146.00873 * 24 23 22 44 44 H 1.08999 * 109.49314 * 176.93241 * 25 17 16 45 45 H 1.09000 * 109.51378 * 56.86280 * 25 17 16 46 46 H 1.08997 * 109.63136 * 248.55025 * 26 14 11 47 47 H 1.09006 * 109.62479 * 8.94002 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 8 0.6641 -5.4200 -1.2355 13 8 0.6649 -5.4193 1.2385 14 7 2.5207 -6.3926 0.0005 15 6 3.0605 -6.9212 1.2625 16 6 4.5897 -6.8357 1.2116 17 7 5.0743 -7.5081 -0.0013 18 6 6.5405 -7.5993 -0.0024 19 6 6.9955 -8.5141 1.1364 20 1 6.6073 -8.1564 2.0901 21 6 8.5406 -8.6027 1.1759 22 6 8.7719 -10.1045 1.4812 23 8 7.7256 -10.7647 0.7369 24 6 6.5405 -9.9636 0.8784 25 6 4.5877 -6.8362 -1.2137 26 6 3.0584 -6.9217 -1.2621 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8906 31 1 2.8721 -3.6042 -0.8895 32 1 2.6882 -6.3273 2.0972 33 1 2.7557 -7.9606 1.3843 34 1 4.8952 -5.7895 1.1942 35 1 5.0107 -7.3234 2.0908 36 1 6.8783 -8.0087 -0.9545 37 1 6.9664 -6.6057 0.1373 38 1 8.9705 -8.3310 0.2118 39 1 8.9458 -7.9771 1.9711 40 1 8.6659 -10.3000 2.5483 41 1 9.7530 -10.4235 1.1294 42 1 5.9493 -10.3220 1.7210 43 1 5.9484 -10.0091 -0.0357 44 1 5.0073 -7.3243 -2.0933 45 1 4.8932 -5.7900 -1.1977 46 1 2.7534 -7.9611 -1.3829 47 1 2.6821 -6.3302 -2.0967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079068241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:55 Heat of formation + Delta-G solvation = -114.283794 kcal Electronic energy + Delta-G solvation = -27485.969772 eV Core-core repulsion = 23602.741662 eV Total energy + Delta-G solvation = -3883.228110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.07421 -38.76216 -36.68744 -35.52250 -35.16124 -33.92226 -32.50654 -31.29207 -31.19063 -29.75164 -27.18243 -25.63598 -24.34516 -24.02109 -22.71911 -21.78854 -20.75630 -20.24143 -18.55450 -17.66460 -16.97390 -16.57607 -16.41209 -15.96217 -15.55578 -15.36689 -15.32749 -15.17613 -14.66419 -14.58529 -14.55322 -14.16116 -13.43412 -13.33924 -13.22956 -12.75602 -12.57376 -12.39888 -12.19624 -11.84586 -11.79339 -11.74626 -11.60874 -11.51431 -11.48586 -11.31681 -11.24157 -11.11626 -10.99866 -10.93541 -10.67129 -10.43477 -10.41277 -9.94161 -9.80124 -9.39602 -8.92344 -8.53719 -8.50654 -6.15638 -4.21487 0.72100 2.96844 3.22913 3.29278 3.31675 3.50374 3.66219 4.21292 4.26972 4.34691 4.35891 4.50832 4.53431 4.54875 4.81193 4.84973 4.90811 4.98580 5.06076 5.11334 5.19402 5.21171 5.24981 5.29964 5.35904 5.38183 5.47751 5.48717 5.53318 5.54897 5.59512 5.66700 5.70118 5.81023 5.85041 5.95606 6.04452 6.44853 6.57217 6.60843 6.76748 6.77732 7.26481 7.32637 7.76932 8.14114 8.81775 9.43357 10.95359 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002761 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.367924 B =10139.427504 C =11232.022880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.009 6.009 15 C 0.129 3.871 16 C 0.035 3.965 17 N -0.535 5.535 18 C 0.064 3.936 19 C -0.120 4.120 20 H 0.085 0.915 21 C -0.151 4.151 22 C 0.047 3.953 23 O -0.383 6.383 24 C 0.059 3.941 25 C 0.040 3.960 26 C 0.129 3.871 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.767 -18.428 1.786 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.690 3.310 12 O -0.953 6.953 13 O -0.954 6.954 14 N -0.845 5.845 15 C 0.003 3.997 16 C -0.094 4.094 17 N -0.260 5.260 18 C -0.064 4.064 19 C -0.139 4.139 20 H 0.103 0.897 21 C -0.189 4.189 22 C -0.030 4.030 23 O -0.302 6.302 24 C -0.017 4.017 25 C -0.089 4.089 26 C 0.003 3.997 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.463 -19.204 1.665 24.712 hybrid contribution 1.422 2.380 0.181 2.778 sum 16.885 -16.824 1.846 23.908 Atomic orbital electron populations 1.69948 1.06107 1.27238 1.49483 1.25068 0.94974 0.99536 0.94895 0.86473 0.79691 0.82889 0.78245 1.20453 1.20955 1.19809 1.20986 0.92984 0.89793 1.52237 0.92161 1.18957 0.92680 0.90569 0.98845 1.30501 1.13634 1.18349 1.09740 1.05720 0.74867 0.76312 0.74123 1.93536 1.71243 1.85190 1.45367 1.93534 1.71269 1.85208 1.45349 1.58072 1.58995 1.56057 1.11388 1.21421 0.92019 1.00779 0.85496 1.22603 0.96028 0.97490 0.93294 1.61879 1.09089 1.52681 1.02372 1.22153 0.87448 0.98071 0.98747 1.22604 0.95029 0.96562 0.99724 0.89663 1.23179 0.95312 0.97378 1.03051 1.23514 0.92281 0.91001 0.96224 1.88881 1.20422 1.48385 1.72540 1.23161 0.87610 0.88341 1.02618 1.22523 0.96024 0.97570 0.92825 1.21423 0.92017 1.00832 0.85455 0.92486 0.94878 0.94869 0.86523 0.86491 0.88829 0.90611 0.93898 0.89595 0.90225 0.94316 0.90308 0.90185 0.92331 0.89157 0.92614 0.88689 0.89596 0.93908 0.90592 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.12 6.12 37.16 0.23 -10.90 16 11 S 2.59 46.19 5.42 -107.50 -0.58 45.61 16 12 O -0.96 -19.74 16.78 -57.54 -0.97 -20.71 16 13 O -0.96 -19.73 16.79 -57.54 -0.97 -20.70 16 14 N -1.01 -13.43 3.26 -113.23 -0.37 -13.80 16 15 C 0.13 1.44 6.47 -3.59 -0.02 1.42 16 16 C 0.04 0.32 5.47 -3.70 -0.02 0.30 16 17 N -0.54 -4.73 4.31 -234.30 -1.01 -5.74 16 18 C 0.06 0.48 4.07 -3.82 -0.02 0.46 16 19 C -0.12 -0.83 2.96 -89.09 -0.26 -1.09 16 20 H 0.09 0.56 6.31 -51.93 -0.33 0.24 16 21 C -0.15 -0.89 6.71 -24.73 -0.17 -1.06 16 22 C 0.05 0.31 7.72 38.21 0.29 0.61 16 23 O -0.38 -3.74 11.52 -35.23 -0.41 -4.14 16 24 C 0.06 0.49 7.21 37.73 0.27 0.76 16 25 C 0.04 0.37 5.62 -3.70 -0.02 0.35 16 26 C 0.13 1.45 6.47 -3.60 -0.02 1.42 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 31 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 32 H 0.09 1.07 7.19 -51.93 -0.37 0.70 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.64 6.11 -51.93 -0.32 0.33 16 36 H 0.08 0.58 7.97 -51.93 -0.41 0.17 16 37 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.84 7.57 -51.92 -0.39 0.45 16 44 H 0.09 0.65 7.99 -51.93 -0.41 0.24 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 1.08 7.19 -51.93 -0.37 0.71 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -34.61 380.65 -11.19 -45.81 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.06 Total: -2.26 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.29 Total: -20.21 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.64 Total: -45.16 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -2.34 Total: -45.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.58 Total: 45.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.61 -11.19 -45.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079068241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.478 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds