Wall clock time and date at job start Tue Mar 31 2020 16:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47310 * 269.99729 * 3 2 1 5 5 H 1.48500 * 109.47390 * 30.00329 * 3 2 1 6 6 H 1.48504 * 109.47223 * 150.00092 * 3 2 1 7 7 C 1.37878 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47049 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.53912 * 68.37600 * 11 10 9 13 13 O 1.42096 * 110.54365 * 291.62638 * 11 10 9 14 14 N 1.65597 * 104.44853 * 179.97438 * 11 10 9 15 15 C 1.47086 * 120.87859 * 90.00521 * 14 11 10 16 16 C 1.53246 * 108.51814 * 231.16177 * 15 14 11 17 17 N 1.46902 * 109.33711 * 306.16785 * 16 15 14 18 18 C 1.46902 * 110.99497 * 187.25382 * 17 16 15 19 19 C 1.53002 * 109.47015 * 65.70187 * 18 17 16 20 20 H 1.09001 * 110.43026 * 303.90528 * 19 18 17 21 21 C 1.54815 * 110.48627 * 181.21757 * 19 18 17 22 22 C 1.54985 * 102.09111 * 220.44301 * 21 19 18 23 23 O 1.44387 * 103.49425 * 37.02458 * 22 21 19 24 24 C 1.43743 * 106.96811 * 319.93816 * 23 22 21 25 25 C 1.46905 * 111.26950 * 63.11028 * 17 16 15 26 26 C 1.47077 * 120.88533 * 269.97607 * 14 11 10 27 27 H 0.96996 * 120.00519 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46992 * 59.99639 * 9 7 2 29 29 H 1.09008 * 109.47206 * 300.00118 * 9 7 2 30 30 H 1.09000 * 109.46821 * 60.00294 * 10 9 7 31 31 H 1.09000 * 109.47123 * 299.99825 * 10 9 7 32 32 H 1.08995 * 109.62590 * 350.86935 * 15 14 11 33 33 H 1.09001 * 109.62973 * 111.45255 * 15 14 11 34 34 H 1.08998 * 109.49282 * 66.12711 * 16 15 14 35 35 H 1.09001 * 109.48895 * 186.20865 * 16 15 14 36 36 H 1.09001 * 109.46736 * 185.70455 * 18 17 16 37 37 H 1.09002 * 109.47174 * 305.69787 * 18 17 16 38 38 H 1.09007 * 110.90480 * 338.64493 * 21 19 18 39 39 H 1.09000 * 110.90449 * 102.23855 * 21 19 18 40 40 H 1.09005 * 110.61890 * 278.52030 * 22 21 19 41 41 H 1.09001 * 110.75494 * 155.58884 * 22 21 19 42 42 H 1.08996 * 109.88008 * 267.08543 * 24 23 22 43 43 H 1.09008 * 109.99553 * 146.00873 * 24 23 22 44 44 H 1.08999 * 109.49314 * 176.93241 * 25 17 16 45 45 H 1.09000 * 109.51378 * 56.86280 * 25 17 16 46 46 H 1.08997 * 109.63136 * 248.55025 * 26 14 11 47 47 H 1.09006 * 109.62479 * 8.94002 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 8 0.6641 -5.4200 -1.2355 13 8 0.6649 -5.4193 1.2385 14 7 2.5207 -6.3926 0.0005 15 6 3.0605 -6.9212 1.2625 16 6 4.5897 -6.8357 1.2116 17 7 5.0743 -7.5081 -0.0013 18 6 6.5405 -7.5993 -0.0024 19 6 6.9955 -8.5141 1.1364 20 1 6.6073 -8.1564 2.0901 21 6 8.5406 -8.6027 1.1759 22 6 8.7719 -10.1045 1.4812 23 8 7.7256 -10.7647 0.7369 24 6 6.5405 -9.9636 0.8784 25 6 4.5877 -6.8362 -1.2137 26 6 3.0584 -6.9217 -1.2621 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8906 31 1 2.8721 -3.6042 -0.8895 32 1 2.6882 -6.3273 2.0972 33 1 2.7557 -7.9606 1.3843 34 1 4.8952 -5.7895 1.1942 35 1 5.0107 -7.3234 2.0908 36 1 6.8783 -8.0087 -0.9545 37 1 6.9664 -6.6057 0.1373 38 1 8.9705 -8.3310 0.2118 39 1 8.9458 -7.9771 1.9711 40 1 8.6659 -10.3000 2.5483 41 1 9.7530 -10.4235 1.1294 42 1 5.9493 -10.3220 1.7210 43 1 5.9484 -10.0091 -0.0357 44 1 5.0073 -7.3243 -2.0933 45 1 4.8932 -5.7900 -1.1977 46 1 2.7534 -7.9611 -1.3829 47 1 2.6821 -6.3302 -2.0967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079068241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:54 Heat of formation + Delta-G solvation = -140.478575 kcal Electronic energy + Delta-G solvation = -27487.105663 eV Core-core repulsion = 23602.741662 eV Total energy + Delta-G solvation = -3884.364001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69695 -39.51435 -38.24528 -37.04648 -36.04773 -35.90268 -33.18040 -33.13646 -32.10796 -30.31507 -27.97210 -27.59326 -25.07609 -24.83949 -23.65853 -23.19842 -21.61671 -20.95872 -19.81586 -19.13202 -18.36825 -17.54147 -17.30318 -17.09201 -16.95565 -16.56933 -16.15524 -16.04162 -15.81090 -15.75936 -15.39186 -15.10359 -15.00469 -14.49719 -14.02504 -13.83936 -13.76019 -13.60075 -13.45343 -13.23242 -13.06949 -12.95414 -12.84087 -12.81357 -12.42725 -12.34676 -12.27534 -12.21753 -12.16421 -12.01866 -11.91303 -11.80973 -11.65966 -11.33869 -11.10523 -10.66888 -10.54689 -10.05029 -9.24067 -8.27959 -6.42410 -0.73572 1.39157 1.40997 1.52021 1.71043 2.36115 2.81640 2.86204 3.05260 3.13368 3.14569 3.59834 3.68603 3.82387 3.98944 4.00509 4.01864 4.13657 4.22986 4.28115 4.36168 4.38824 4.39920 4.46812 4.55177 4.71135 4.74656 4.75844 4.80131 4.81593 4.90980 4.96166 4.97516 5.03170 5.06948 5.13980 5.16304 5.24409 5.24860 5.31608 5.61064 5.65835 6.00209 6.03849 6.06891 6.13070 6.71100 7.27919 8.84283 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002761 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.367924 B =10139.427504 C =11232.022880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.585 4.585 11 S 2.614 3.386 12 O -0.993 6.993 13 O -0.993 6.993 14 N -0.998 5.998 15 C 0.121 3.879 16 C 0.039 3.961 17 N -0.539 5.539 18 C 0.068 3.932 19 C -0.115 4.115 20 H 0.091 0.909 21 C -0.145 4.145 22 C 0.040 3.960 23 O -0.410 6.410 24 C 0.059 3.941 25 C 0.043 3.957 26 C 0.121 3.879 27 H 0.268 0.732 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.745 -18.665 2.039 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.717 4.717 11 S 2.712 3.288 12 O -0.983 6.983 13 O -0.983 6.983 14 N -0.838 5.838 15 C -0.004 4.004 16 C -0.090 4.090 17 N -0.263 5.263 18 C -0.060 4.060 19 C -0.134 4.134 20 H 0.109 0.891 21 C -0.184 4.184 22 C -0.036 4.036 23 O -0.330 6.330 24 C -0.017 4.017 25 C -0.086 4.086 26 C -0.004 4.004 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.459 -19.441 1.919 26.876 hybrid contribution 0.516 2.315 0.103 2.374 sum 18.974 -17.126 2.022 25.640 Atomic orbital electron populations 1.70097 1.08086 1.28373 1.50797 1.26125 0.95859 1.03904 0.94356 0.85312 0.78648 0.77640 0.78657 1.19578 1.20805 1.18124 1.21493 0.93887 0.90785 1.51603 0.90737 1.18807 0.93564 0.93100 0.96243 1.30381 1.12657 1.16862 1.11809 1.04730 0.75036 0.76274 0.72749 1.93489 1.72640 1.85628 1.46576 1.93488 1.72652 1.85641 1.46533 1.57700 1.58372 1.54428 1.13273 1.21678 0.93596 1.01008 0.84146 1.22585 0.94295 0.97744 0.94408 1.61878 1.10091 1.52395 1.01964 1.22145 0.86330 0.98299 0.99192 1.22569 0.95736 0.95426 0.99702 0.89063 1.23162 0.94529 0.96970 1.03693 1.23700 0.92041 0.91419 0.96435 1.88852 1.21437 1.49475 1.73233 1.23155 0.87299 0.89142 1.02138 1.22505 0.94299 0.97843 0.93951 1.21670 0.93581 1.01023 0.84117 0.92350 0.97653 0.97617 0.84444 0.84432 0.89232 0.89639 0.94169 0.87497 0.89920 0.94035 0.90155 0.88758 0.91649 0.88170 0.92721 0.89546 0.87577 0.94152 0.89664 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 9 C 0.02 1.14 4.98 29.85 0.15 1.28 16 10 C -0.59 -21.97 6.12 71.98 0.44 -21.53 16 11 S 2.61 93.81 5.42 -56.49 -0.31 93.51 16 12 O -0.99 -41.45 16.78 -127.65 -2.14 -43.60 16 13 O -0.99 -41.36 16.79 -127.65 -2.14 -43.50 16 14 N -1.00 -25.41 3.26 -512.13 -1.67 -27.08 16 15 C 0.12 2.50 6.47 86.35 0.56 3.06 16 16 C 0.04 0.62 5.47 86.39 0.47 1.09 16 17 N -0.54 -8.06 4.31 -895.20 -3.86 -11.92 16 18 C 0.07 0.82 4.07 86.30 0.35 1.17 16 19 C -0.12 -1.28 2.96 -9.80 -0.03 -1.31 16 20 H 0.09 0.91 6.31 -2.39 -0.02 0.90 16 21 C -0.15 -1.32 6.71 31.89 0.21 -1.11 16 22 C 0.04 0.46 7.72 72.66 0.56 1.02 16 23 O -0.41 -7.42 11.52 -148.98 -1.72 -9.14 16 24 C 0.06 0.87 7.21 72.35 0.52 1.39 16 25 C 0.04 0.70 5.62 86.38 0.49 1.18 16 26 C 0.12 2.53 6.47 86.35 0.56 3.09 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 31 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.09 1.95 7.19 -2.39 -0.02 1.93 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.11 1.26 6.11 -2.39 -0.01 1.25 16 36 H 0.08 0.97 7.97 -2.39 -0.02 0.95 16 37 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 38 H 0.08 0.72 7.87 -2.38 -0.02 0.70 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 1.40 7.57 -2.38 -0.02 1.38 16 44 H 0.11 1.30 7.99 -2.39 -0.02 1.28 16 45 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 1.97 7.19 -2.38 -0.02 1.96 16 Total: -1.00 -75.78 380.65 -3.62 -79.39 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.94 Total: 13.79 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.98 Total: -39.92 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.25 Total: -95.50 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -6.00 Total: -96.24 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 93.81 SS G_CDS: -0.31 Total: 93.51 kcal Total: -75.78 -3.62 -79.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079068241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.088 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds