Wall clock time and date at job start Tue Mar 31 2020 16:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48503 * 109.47020 * 239.99918 * 3 2 1 5 5 H 1.48506 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47521 * 119.99639 * 3 2 1 7 7 C 1.37883 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99645 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.34985 * 125.97037 * 124.99812 * 10 9 7 12 12 C 1.35217 * 107.87145 * 180.02562 * 11 10 9 13 13 C 1.40466 * 107.86954 * 359.97438 * 12 11 10 14 14 N 1.39932 * 125.98039 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00281 * 359.97438 * 14 13 12 16 16 O 1.21394 * 119.99410 * 0.02562 * 15 14 13 17 17 C 1.49340 * 120.00252 * 180.02562 * 15 14 13 18 18 O 1.21359 * 119.99730 * 0.02562 * 17 15 14 19 19 N 1.34779 * 120.00035 * 180.02562 * 17 15 14 20 20 C 1.46499 * 119.99872 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46840 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.63818 * 304.57604 * 21 20 19 23 23 C 1.53014 * 109.64690 * 64.99800 * 21 20 19 24 24 C 1.50066 * 110.15249 * 169.11841 * 23 21 20 25 25 C 1.29443 * 124.07286 * 342.87293 * 24 23 21 26 26 C 1.50070 * 124.07594 * 0.48674 * 25 24 23 27 27 C 1.53040 * 110.13697 * 342.83429 * 26 25 24 28 28 N 1.31268 * 108.03708 * 0.26474 * 13 12 11 29 29 H 0.96998 * 119.99613 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47266 * 60.00236 * 9 7 2 31 31 H 1.09000 * 109.47035 * 299.99883 * 9 7 2 32 32 H 1.07994 * 126.06684 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06723 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99628 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99708 * 359.97438 * 19 17 15 36 36 H 1.09002 * 109.47391 * 59.99686 * 20 19 17 37 37 H 1.09001 * 109.46813 * 299.99742 * 20 19 17 38 38 H 1.09003 * 109.35947 * 289.33255 * 23 21 20 39 39 H 1.09005 * 109.35930 * 49.04925 * 23 21 20 40 40 H 1.07995 * 117.96596 * 162.88829 * 24 23 21 41 41 H 1.08002 * 117.96184 * 180.46968 * 25 24 23 42 42 H 1.08997 * 109.35850 * 103.05675 * 26 25 24 43 43 H 1.08998 * 109.35693 * 222.77861 * 26 25 24 44 44 H 1.08994 * 109.66069 * 289.77302 * 27 26 25 45 45 H 1.09001 * 109.63368 * 169.14177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2412 -4.6222 0.8972 12 6 3.2602 -5.4424 0.5545 13 6 3.8696 -4.9152 -0.5960 14 7 4.9641 -5.4657 -1.2721 15 6 5.5286 -6.6052 -0.8255 16 8 5.0871 -7.1541 0.1632 17 6 6.6971 -7.1923 -1.5467 18 8 7.1386 -6.6431 -2.5347 19 7 7.2612 -8.3321 -1.1003 20 6 8.4078 -8.9077 -1.8075 21 6 8.8518 -10.1898 -1.1003 22 1 9.0598 -9.9766 -0.0519 23 6 7.7461 -11.2426 -1.2017 24 6 8.2613 -12.5783 -0.7516 25 6 9.5172 -12.8727 -0.6449 26 6 10.6336 -11.9162 -0.9462 27 6 10.1118 -10.7426 -1.7784 28 7 3.2359 -3.8131 -0.9229 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5761 -4.7517 1.7380 33 1 3.5529 -6.3434 1.0730 34 1 5.3170 -5.0268 -2.0618 35 1 6.9084 -8.7707 -0.3103 36 1 9.2293 -8.1913 -1.8116 37 1 8.1226 -9.1394 -2.8338 38 1 6.9074 -10.9476 -0.5710 39 1 7.4115 -11.3167 -2.2364 40 1 7.5392 -13.3415 -0.5015 41 1 9.7779 -13.8686 -0.3183 42 1 11.0493 -11.5400 -0.0114 43 1 11.4126 -12.4346 -1.5052 44 1 9.8663 -11.0862 -2.7833 45 1 10.8722 -9.9634 -1.8299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086450276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:08 Heat of formation + Delta-G solvation = 18.155147 kcal Electronic energy + Delta-G solvation = -26834.907388 eV Core-core repulsion = 22854.271061 eV Total energy + Delta-G solvation = -3980.636327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11044 -40.29209 -39.29559 -38.35752 -35.66923 -34.70628 -33.36831 -31.93649 -31.15878 -31.04362 -29.42407 -27.45578 -26.59944 -24.74448 -23.51095 -22.76610 -21.68815 -21.25971 -20.36526 -19.69523 -18.43322 -18.35123 -16.98126 -16.62390 -16.56334 -16.31563 -16.14976 -15.61032 -15.18088 -15.03312 -14.61465 -14.35937 -14.17610 -14.07740 -13.82384 -13.64098 -13.27946 -12.96227 -12.82200 -12.46895 -12.42337 -12.35614 -12.28022 -11.90352 -11.59272 -11.25766 -11.08548 -11.02483 -10.85847 -10.65116 -10.55820 -10.27546 -10.04447 -9.59370 -9.55918 -9.54549 -9.42275 -8.64604 -8.23952 -7.59002 -6.26092 -4.31370 1.18904 1.86646 2.04473 2.65366 3.02133 3.18123 3.25631 3.28875 3.34044 3.65536 3.84136 4.07924 4.17876 4.29313 4.32850 4.39641 4.67690 4.73345 4.87494 4.97806 5.05946 5.09231 5.19687 5.29723 5.30355 5.41600 5.41931 5.48450 5.55361 5.69332 5.70662 5.84006 5.92236 6.09454 6.21595 6.30649 6.40247 6.51951 6.78438 6.87469 7.01514 7.23486 7.34933 7.60639 7.68409 7.84325 7.94274 7.97025 8.53316 8.76880 9.34477 10.82660 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030727 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.017689 B =15614.692811 C =16197.842168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.314 5.314 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.250 3.750 14 N -0.598 5.598 15 C 0.512 3.488 16 O -0.500 6.500 17 C 0.516 3.484 18 O -0.515 6.515 19 N -0.700 5.700 20 C 0.122 3.878 21 C -0.101 4.101 22 H 0.084 0.916 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.091 4.091 27 C -0.112 4.112 28 N -0.294 5.294 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.423 0.577 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.736 -24.714 -1.023 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.317 4.317 13 C -0.003 4.003 14 N -0.246 5.246 15 C 0.292 3.708 16 O -0.374 6.374 17 C 0.296 3.704 18 O -0.390 6.390 19 N -0.354 5.354 20 C -0.001 4.001 21 C -0.120 4.120 22 H 0.102 0.898 23 C -0.128 4.128 24 C -0.171 4.171 25 C -0.178 4.178 26 C -0.128 4.128 27 C -0.150 4.150 28 N -0.126 5.126 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.261 0.739 35 H 0.251 0.749 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.426 -23.527 -1.866 29.337 hybrid contribution 0.331 0.222 0.607 0.726 sum 17.757 -23.305 -1.260 29.326 Atomic orbital electron populations 1.69905 1.06040 1.27791 1.49543 1.24939 0.94993 0.99560 0.94502 0.86374 0.79377 0.81709 0.78971 1.19888 1.21026 1.20032 1.21214 0.93992 0.89347 1.52398 0.91294 1.19796 0.85557 0.81213 0.99431 1.49174 1.22738 1.19674 1.18040 1.22581 1.00213 0.90149 0.96721 1.21514 1.02162 1.06491 1.01521 1.19017 0.91507 0.94731 0.95009 1.41998 1.28769 1.23720 1.30141 1.19927 0.84350 0.81413 0.85122 1.90709 1.61931 1.59951 1.24765 1.19883 0.83986 0.81828 0.84742 1.90797 1.62689 1.60298 1.25237 1.45711 1.32883 1.24781 1.32030 1.21585 0.87870 0.94314 0.96324 1.21491 0.96116 0.93503 1.00875 0.89810 1.20572 0.97770 0.92322 1.02113 1.22043 0.96494 0.97824 1.00714 1.22059 0.94585 0.99618 1.01503 1.20448 0.96827 0.95271 1.00228 1.21579 0.96364 0.97758 0.99311 1.77411 1.03237 1.15707 1.16205 0.92235 0.93540 0.92377 0.81231 0.82163 0.73942 0.74940 0.90559 0.90618 0.90653 0.90367 0.87849 0.88041 0.90739 0.90874 0.91193 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.68 9.23 -34.44 -0.32 -15.00 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.26 6.45 6.26 -5.19 -0.03 6.41 16 10 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.42 9.60 -39.82 -0.38 -5.80 16 13 C 0.25 4.98 8.10 -154.55 -1.25 3.73 16 14 N -0.60 -9.74 5.43 -11.58 -0.06 -9.81 16 15 C 0.51 7.39 7.85 -11.64 -0.09 7.30 16 16 O -0.50 -7.75 13.60 5.46 0.07 -7.68 16 17 C 0.52 6.27 7.89 -11.64 -0.09 6.18 16 18 O -0.52 -7.33 16.48 5.49 0.09 -7.24 16 19 N -0.70 -6.14 5.35 -60.77 -0.32 -6.46 16 20 C 0.12 0.84 5.07 -4.04 -0.02 0.82 16 21 C -0.10 -0.53 2.28 -90.41 -0.21 -0.74 16 22 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 23 C -0.09 -0.51 5.18 -28.18 -0.15 -0.65 16 24 C -0.15 -0.88 9.80 -35.90 -0.35 -1.24 16 25 C -0.16 -0.87 9.80 -35.90 -0.35 -1.22 16 26 C -0.09 -0.42 6.12 -28.17 -0.17 -0.59 16 27 C -0.11 -0.52 5.31 -26.51 -0.14 -0.66 16 28 N -0.29 -6.76 12.42 31.41 0.39 -6.37 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 34 H 0.42 6.34 8.29 -40.82 -0.34 6.00 16 35 H 0.41 3.17 7.23 -40.82 -0.30 2.88 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.07 0.42 7.48 -51.93 -0.39 0.03 16 39 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 40 H 0.10 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -31.80 380.91 -8.82 -40.62 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.36 Total: 5.67 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -3.85 Total: 1.00 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.51 Total: -54.43 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.16 Total: -14.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.80 -8.82 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.773 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds