Wall clock time and date at job start Tue Mar 31 2020 16:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48503 * 109.47020 * 239.99918 * 3 2 1 5 5 H 1.48506 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47521 * 119.99639 * 3 2 1 7 7 C 1.37883 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99645 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.34985 * 125.97037 * 124.99812 * 10 9 7 12 12 C 1.35217 * 107.87145 * 180.02562 * 11 10 9 13 13 C 1.40466 * 107.86954 * 359.97438 * 12 11 10 14 14 N 1.39932 * 125.98039 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00281 * 359.97438 * 14 13 12 16 16 O 1.21394 * 119.99410 * 0.02562 * 15 14 13 17 17 C 1.49340 * 120.00252 * 180.02562 * 15 14 13 18 18 O 1.21359 * 119.99730 * 0.02562 * 17 15 14 19 19 N 1.34779 * 120.00035 * 180.02562 * 17 15 14 20 20 C 1.46499 * 119.99872 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46840 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.63818 * 304.57604 * 21 20 19 23 23 C 1.53014 * 109.64690 * 64.99800 * 21 20 19 24 24 C 1.50066 * 110.15249 * 169.11841 * 23 21 20 25 25 C 1.29443 * 124.07286 * 342.87293 * 24 23 21 26 26 C 1.50070 * 124.07594 * 0.48674 * 25 24 23 27 27 C 1.53040 * 110.13697 * 342.83429 * 26 25 24 28 28 N 1.31268 * 108.03708 * 0.26474 * 13 12 11 29 29 H 0.96998 * 119.99613 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47266 * 60.00236 * 9 7 2 31 31 H 1.09000 * 109.47035 * 299.99883 * 9 7 2 32 32 H 1.07994 * 126.06684 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06723 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99628 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99708 * 359.97438 * 19 17 15 36 36 H 1.09002 * 109.47391 * 59.99686 * 20 19 17 37 37 H 1.09001 * 109.46813 * 299.99742 * 20 19 17 38 38 H 1.09003 * 109.35947 * 289.33255 * 23 21 20 39 39 H 1.09005 * 109.35930 * 49.04925 * 23 21 20 40 40 H 1.07995 * 117.96596 * 162.88829 * 24 23 21 41 41 H 1.08002 * 117.96184 * 180.46968 * 25 24 23 42 42 H 1.08997 * 109.35850 * 103.05675 * 26 25 24 43 43 H 1.08998 * 109.35693 * 222.77861 * 26 25 24 44 44 H 1.08994 * 109.66069 * 289.77302 * 27 26 25 45 45 H 1.09001 * 109.63368 * 169.14177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2412 -4.6222 0.8972 12 6 3.2602 -5.4424 0.5545 13 6 3.8696 -4.9152 -0.5960 14 7 4.9641 -5.4657 -1.2721 15 6 5.5286 -6.6052 -0.8255 16 8 5.0871 -7.1541 0.1632 17 6 6.6971 -7.1923 -1.5467 18 8 7.1386 -6.6431 -2.5347 19 7 7.2612 -8.3321 -1.1003 20 6 8.4078 -8.9077 -1.8075 21 6 8.8518 -10.1898 -1.1003 22 1 9.0598 -9.9766 -0.0519 23 6 7.7461 -11.2426 -1.2017 24 6 8.2613 -12.5783 -0.7516 25 6 9.5172 -12.8727 -0.6449 26 6 10.6336 -11.9162 -0.9462 27 6 10.1118 -10.7426 -1.7784 28 7 3.2359 -3.8131 -0.9229 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5761 -4.7517 1.7380 33 1 3.5529 -6.3434 1.0730 34 1 5.3170 -5.0268 -2.0618 35 1 6.9084 -8.7707 -0.3103 36 1 9.2293 -8.1913 -1.8116 37 1 8.1226 -9.1394 -2.8338 38 1 6.9074 -10.9476 -0.5710 39 1 7.4115 -11.3167 -2.2364 40 1 7.5392 -13.3415 -0.5015 41 1 9.7779 -13.8686 -0.3183 42 1 11.0493 -11.5400 -0.0114 43 1 11.4126 -12.4346 -1.5052 44 1 9.8663 -11.0862 -2.7833 45 1 10.8722 -9.9634 -1.8299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086450276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:07 Heat of formation + Delta-G solvation = -1.745848 kcal Electronic energy + Delta-G solvation = -26835.770360 eV Core-core repulsion = 22854.271061 eV Total energy + Delta-G solvation = -3981.499299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44534 -41.54335 -40.04187 -39.30010 -36.73363 -35.88832 -35.23936 -32.83238 -32.50304 -31.56719 -31.01897 -28.91465 -27.76129 -25.87025 -24.62670 -23.85229 -22.62188 -22.16556 -21.77960 -20.97776 -19.50117 -18.83878 -18.70150 -18.24759 -17.75758 -17.22936 -17.00818 -16.82772 -16.47738 -16.17333 -15.94921 -15.47776 -15.24703 -15.01115 -14.58916 -14.52854 -14.32337 -14.21607 -13.87071 -13.82176 -13.70368 -13.21455 -13.03000 -12.92730 -12.85227 -12.79452 -12.62933 -12.30217 -12.14259 -11.68675 -11.64627 -11.47219 -11.42669 -11.06279 -10.77514 -10.71862 -10.34168 -9.83378 -9.83005 -9.21481 -8.33602 -6.47175 0.05495 0.87345 1.14207 1.38531 1.40532 1.45522 1.49106 1.75027 1.85465 2.26676 2.34287 2.60994 2.98793 3.25870 3.60863 3.75202 3.91503 3.91576 4.22413 4.23278 4.33149 4.47969 4.52628 4.63827 4.66663 4.76098 4.77291 4.83683 4.84841 4.88881 4.95531 5.02931 5.04384 5.05801 5.12366 5.17371 5.33949 5.46686 5.55939 5.74797 5.78983 5.81129 5.86044 6.11439 6.16114 6.25648 6.56502 6.63907 6.79441 6.96905 7.22674 8.73999 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030727 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.017689 B =15614.692811 C =16197.842168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.271 3.729 10 N -0.339 5.339 11 C 0.060 3.940 12 C -0.287 4.287 13 C 0.258 3.742 14 N -0.601 5.601 15 C 0.516 3.484 16 O -0.507 6.507 17 C 0.523 3.477 18 O -0.537 6.537 19 N -0.680 5.680 20 C 0.121 3.879 21 C -0.092 4.092 22 H 0.087 0.913 23 C -0.091 4.091 24 C -0.165 4.165 25 C -0.163 4.163 26 C -0.092 4.092 27 C -0.111 4.111 28 N -0.342 5.342 29 H 0.273 0.727 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.207 0.793 33 H 0.177 0.823 34 H 0.428 0.572 35 H 0.421 0.579 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.245 -25.740 -0.339 32.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.122 5.122 11 C -0.088 4.088 12 C -0.318 4.318 13 C 0.004 3.996 14 N -0.250 5.250 15 C 0.297 3.703 16 O -0.381 6.381 17 C 0.303 3.697 18 O -0.414 6.414 19 N -0.333 5.333 20 C -0.001 4.001 21 C -0.111 4.111 22 H 0.105 0.895 23 C -0.128 4.128 24 C -0.183 4.183 25 C -0.181 4.181 26 C -0.129 4.129 27 C -0.149 4.149 28 N -0.173 5.173 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.194 0.806 34 H 0.266 0.734 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.959 -24.613 -1.163 31.090 hybrid contribution -0.062 0.351 0.410 0.543 sum 18.897 -24.262 -0.753 30.762 Atomic orbital electron populations 1.69978 1.07130 1.28827 1.49781 1.25707 0.95839 1.02623 0.93874 0.85431 0.78313 0.78006 0.78861 1.20073 1.19744 1.19430 1.21378 0.93393 0.91040 1.53033 0.92981 1.19387 0.85614 0.81368 0.98371 1.48911 1.23307 1.20382 1.19556 1.23251 1.00380 0.88590 0.96593 1.21757 1.01952 1.06860 1.01251 1.19338 0.91530 0.93751 0.94992 1.42127 1.28179 1.24383 1.30357 1.20392 0.84498 0.80527 0.84862 1.90688 1.62267 1.59957 1.25147 1.19422 0.83376 0.82567 0.84377 1.90801 1.63221 1.61217 1.26176 1.45722 1.32555 1.23269 1.31802 1.21754 0.86989 0.94964 0.96363 1.21425 0.96335 0.92447 1.00880 0.89484 1.20574 0.97851 0.92432 1.01988 1.22122 0.96809 0.98004 1.01370 1.22245 0.94750 1.00123 1.00969 1.20486 0.96736 0.95094 1.00547 1.21586 0.96135 0.98037 0.99167 1.77322 1.04552 1.17761 1.17678 0.91820 0.95930 0.91911 0.77627 0.80607 0.73404 0.74062 0.90278 0.90562 0.90683 0.90590 0.87731 0.87527 0.90290 0.90023 0.91299 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 2 C 0.02 1.11 5.46 84.66 0.46 1.58 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.97 9.23 25.60 0.24 -30.73 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.27 13.90 6.26 85.63 0.54 14.43 16 10 N -0.34 -15.66 3.67 -351.85 -1.29 -16.96 16 11 C 0.06 2.26 11.43 83.51 0.95 3.22 16 12 C -0.29 -10.56 9.60 22.12 0.21 -10.35 16 13 C 0.26 10.22 8.10 133.40 1.08 11.30 16 14 N -0.60 -19.35 5.43 -308.89 -1.68 -21.03 16 15 C 0.52 14.31 7.85 87.23 0.69 15.00 16 16 O -0.51 -14.86 13.60 -3.38 -0.05 -14.91 16 17 C 0.52 12.03 7.89 87.23 0.69 12.72 16 18 O -0.54 -14.73 16.48 -3.27 -0.05 -14.79 16 19 N -0.68 -10.70 5.35 -464.52 -2.48 -13.18 16 20 C 0.12 1.45 5.07 86.38 0.44 1.89 16 21 C -0.09 -0.79 2.28 -10.66 -0.02 -0.82 16 22 H 0.09 0.74 8.13 -2.39 -0.02 0.72 16 23 C -0.09 -0.88 5.18 29.65 0.15 -0.73 16 24 C -0.16 -1.69 9.80 27.04 0.27 -1.42 16 25 C -0.16 -1.52 9.80 27.04 0.27 -1.25 16 26 C -0.09 -0.66 6.12 29.66 0.18 -0.48 16 27 C -0.11 -0.81 5.31 30.74 0.16 -0.65 16 28 N -0.34 -15.98 12.42 -54.53 -0.68 -16.65 16 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 3.11 8.07 -2.39 -0.02 3.09 16 32 H 0.21 5.88 8.06 -2.91 -0.02 5.86 16 33 H 0.18 5.88 5.91 -2.91 -0.02 5.86 16 34 H 0.43 12.86 8.29 -92.71 -0.77 12.09 16 35 H 0.42 5.58 7.23 -92.71 -0.67 4.91 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16 38 H 0.07 0.71 7.48 -2.39 -0.02 0.70 16 39 H 0.08 0.77 8.08 -2.38 -0.02 0.75 16 40 H 0.10 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.11 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -67.83 380.91 1.97 -65.87 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.41 Total: 23.74 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.30 Total: 13.70 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -5.85 Total: -119.33 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.10 Total: -29.69 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.83 1.97 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086450276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.121 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds