Wall clock time and date at job start Tue Mar 31 2020 16:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99658 * 2 1 4 4 C 1.53008 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47278 * 67.52218 * 4 3 2 6 6 C 1.46510 * 119.99956 * 278.27289 * 5 4 3 7 7 C 1.50698 * 109.47112 * 269.99928 * 6 5 4 8 8 H 1.08001 * 119.99794 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99673 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99251 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00272 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47357 * 89.99685 * 11 9 7 13 13 H 1.48505 * 109.47073 * 210.00023 * 11 9 7 14 14 H 1.48501 * 109.47062 * 329.99791 * 11 9 7 15 15 C 1.34777 * 120.00037 * 98.27289 * 5 4 3 16 16 O 1.21572 * 119.99918 * 186.12616 * 15 5 4 17 17 C 1.47683 * 119.99789 * 6.12335 * 15 5 4 18 18 C 1.40186 * 120.40524 * 135.26785 * 17 15 5 19 19 N 1.31188 * 121.37415 * 180.23359 * 18 17 15 20 20 C 1.32932 * 121.84062 * 359.47996 * 19 18 17 21 21 C 1.41069 * 120.20458 * 0.51164 * 20 19 18 22 22 C 1.39506 * 120.40990 * 315.24647 * 17 15 5 23 23 C 1.45974 * 106.43419 * 179.73164 * 21 20 19 24 24 C 1.50694 * 126.20674 * 179.97438 * 23 21 20 25 25 N 1.30202 * 107.58552 * 0.02562 * 23 21 20 26 26 N 1.36632 * 133.26630 * 180.16443 * 20 19 18 27 27 C 1.46502 * 125.34068 * 0.31597 * 26 20 19 28 28 H 1.08995 * 109.47349 * 300.00046 * 1 2 3 29 29 H 1.09006 * 109.47020 * 60.00473 * 1 2 3 30 30 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99626 * 3 2 1 32 32 H 1.09004 * 109.47003 * 299.99041 * 3 2 1 33 33 H 1.08999 * 109.46631 * 307.52686 * 4 3 2 34 34 H 1.08992 * 109.47203 * 187.52297 * 4 3 2 35 35 H 1.09000 * 109.46852 * 30.00362 * 6 5 4 36 36 H 1.09002 * 109.47030 * 149.99755 * 6 5 4 37 37 H 0.97003 * 119.99342 * 179.97438 * 10 9 7 38 38 H 1.08001 * 119.31749 * 359.96023 * 18 17 15 39 39 H 1.07995 * 121.02682 * 0.02562 * 22 17 15 40 40 H 1.09000 * 109.47306 * 90.00205 * 24 23 21 41 41 H 1.08999 * 109.47092 * 210.00098 * 24 23 21 42 42 H 1.08994 * 109.47537 * 330.00459 * 24 23 21 43 43 H 1.09006 * 109.46954 * 90.00357 * 27 26 20 44 44 H 1.08994 * 109.47044 * 209.99759 * 27 26 20 45 45 H 1.08995 * 109.47360 * 330.00357 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9801 0.6201 -1.2772 6 6 3.9377 -0.8286 -1.4918 7 6 5.2440 -1.4396 -1.0547 8 1 6.0274 -0.8118 -0.6564 9 6 5.4387 -2.8004 -1.1622 10 7 6.5790 -3.3335 -0.7812 11 14 4.0835 -3.8863 -1.8503 12 1 4.2388 -3.9985 -3.3228 13 1 4.1728 -5.2367 -1.2388 14 1 2.7616 -3.2871 -1.5362 15 6 4.4283 1.4332 -2.2542 16 8 4.6919 0.9784 -3.3504 17 6 4.5991 2.8767 -1.9930 18 6 5.7545 3.5437 -2.4234 19 7 5.9279 4.8244 -2.1977 20 6 5.0169 5.5540 -1.5615 21 6 3.8268 4.9559 -1.0968 22 6 3.6124 3.5933 -1.3155 23 6 3.0587 6.0142 -0.4481 24 6 1.7093 5.8621 0.2052 25 7 3.7505 7.1136 -0.5373 26 7 4.9521 6.8727 -1.2100 27 6 5.9804 7.8769 -1.4939 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8485 0.5319 0.8141 34 1 3.9781 2.1717 0.1339 35 1 3.1226 -1.2583 -0.9095 36 1 3.7762 -1.0346 -2.5499 37 1 6.7158 -4.2909 -0.8565 38 1 6.5199 2.9910 -2.9479 39 1 2.7106 3.1094 -0.9707 40 1 1.8413 5.6092 1.2572 41 1 1.1582 6.7990 0.1231 42 1 1.1522 5.0682 -0.2921 43 1 5.7776 8.3419 -2.4587 44 1 5.9696 8.6385 -0.7142 45 1 6.9590 7.3976 -1.5201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:56 Heat of formation + Delta-G solvation = 43.166684 kcal Electronic energy + Delta-G solvation = -29082.426304 eV Core-core repulsion = 25102.874559 eV Total energy + Delta-G solvation = -3979.551746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79803 -39.68054 -37.94137 -37.48265 -35.15924 -34.56762 -32.80978 -31.86312 -30.45190 -29.93169 -29.76874 -27.79509 -26.25518 -25.88269 -24.04573 -23.57563 -22.83882 -22.00135 -20.12229 -19.13201 -17.81619 -17.27634 -16.85493 -16.67376 -16.51021 -16.11690 -15.74686 -15.35141 -15.30687 -14.85487 -14.11977 -13.98111 -13.87568 -13.86633 -13.61920 -13.57539 -13.26124 -13.04112 -12.69140 -12.59318 -12.43756 -12.15104 -11.98076 -11.89991 -11.85845 -11.54488 -11.21341 -11.08173 -10.91235 -10.49931 -10.32948 -10.07114 -9.82455 -9.56163 -9.48929 -9.15666 -9.10456 -8.51840 -8.33106 -7.75188 -6.02858 -4.00943 0.59403 0.92276 1.92451 2.16410 3.15597 3.35524 3.41346 3.45576 3.57767 3.78798 3.84848 3.90642 4.06863 4.26921 4.46899 4.60638 4.70342 4.89232 4.94720 4.99856 5.09053 5.11243 5.22181 5.23189 5.25465 5.30112 5.31705 5.38213 5.39745 5.45181 5.47987 5.52679 5.57402 5.72443 5.90215 6.02782 6.13793 6.29794 6.61360 6.91774 7.04744 7.23888 7.24578 7.31872 7.68436 7.75654 8.18347 8.50825 8.83073 9.00217 9.57903 11.10459 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003751 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.191473 B = 7462.734013 C = 8870.975919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.039 3.961 4 C 0.099 3.901 5 N -0.576 5.576 6 C 0.216 3.784 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.559 3.441 16 O -0.530 6.530 17 C -0.208 4.208 18 C 0.223 3.777 19 N -0.505 5.505 20 C 0.325 3.675 21 C -0.231 4.231 22 C 0.021 3.979 23 C 0.114 3.886 24 C -0.077 4.077 25 N -0.244 5.244 26 N -0.396 5.396 27 C 0.113 3.887 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.178 0.822 39 H 0.150 0.850 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 20.008 3.718 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.039 4.039 4 C -0.025 4.025 5 N -0.305 5.305 6 C 0.096 3.904 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.538 5.538 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.345 3.655 16 O -0.407 6.407 17 C -0.215 4.215 18 C 0.054 3.946 19 N -0.220 5.220 20 C 0.086 3.914 21 C -0.241 4.241 22 C -0.008 4.008 23 C -0.065 4.065 24 C -0.135 4.135 25 N -0.058 5.058 26 N -0.186 5.186 27 C -0.028 4.028 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.195 0.805 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.972 21.273 3.145 23.703 hybrid contribution -1.317 -1.523 -0.230 2.027 sum -11.289 19.749 2.915 22.934 Atomic orbital electron populations 1.22741 0.81822 1.02769 0.99388 1.88107 1.18948 1.26675 1.95145 1.23254 0.95164 0.85791 0.99688 1.21799 0.91288 1.00564 0.88872 1.47786 1.61284 1.08934 1.12537 1.19809 0.98364 0.74313 0.97887 1.21348 0.99649 0.93083 1.42671 0.90816 1.24811 0.95470 0.97786 0.94798 1.69904 1.23941 1.12024 1.47932 0.86878 0.83263 0.80078 0.79782 1.20046 1.21238 1.18536 1.17792 0.78431 0.84379 0.84901 1.90778 1.50722 1.76227 1.23009 1.20958 0.98268 0.96542 1.05763 1.22871 0.94538 0.87201 0.90039 1.66787 1.30094 1.07279 1.17813 1.19140 0.91430 0.86595 0.94274 1.20265 0.98114 0.95352 1.10359 1.21617 0.98122 0.90760 0.90272 1.23494 0.96996 0.88741 0.97244 1.20305 0.88877 1.03886 1.00469 1.76623 0.93097 1.22669 1.13447 1.47953 1.16411 1.05020 1.49220 1.21804 0.88508 0.90446 1.02019 0.94353 0.94397 0.89724 0.92345 0.93325 0.88516 0.89161 0.93119 0.94676 0.92658 0.80534 0.83288 0.89437 0.89969 0.89844 0.91182 0.89506 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.64 8.92 -35.23 -0.31 -5.95 16 3 C 0.04 0.48 5.24 37.16 0.19 0.68 16 4 C 0.10 1.52 5.34 -4.04 -0.02 1.50 16 5 N -0.58 -11.63 2.46 -176.23 -0.43 -12.06 16 6 C 0.22 5.28 4.14 -5.19 -0.02 5.26 16 7 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 8 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 11 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 15 C 0.56 11.30 7.29 -12.40 -0.09 11.21 16 16 O -0.53 -12.79 16.54 5.30 0.09 -12.71 16 17 C -0.21 -3.34 5.13 -104.84 -0.54 -3.88 16 18 C 0.22 3.48 10.82 -17.10 -0.18 3.30 16 19 N -0.51 -7.65 10.37 -12.02 -0.12 -7.78 16 20 C 0.32 4.66 7.96 -156.09 -1.24 3.42 16 21 C -0.23 -3.02 6.33 -105.20 -0.67 -3.68 16 22 C 0.02 0.27 7.55 -38.58 -0.29 -0.02 16 23 C 0.11 1.25 7.44 -80.19 -0.60 0.65 16 24 C -0.08 -0.50 10.48 36.00 0.38 -0.12 16 25 N -0.24 -3.00 12.39 34.84 0.43 -2.56 16 26 N -0.40 -5.00 4.03 -67.17 -0.27 -5.27 16 27 C 0.11 0.98 11.43 59.85 0.68 1.66 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.56 6.41 -51.93 -0.33 0.22 16 33 H 0.10 1.61 8.13 -51.93 -0.42 1.18 16 34 H 0.09 1.19 4.97 -51.93 -0.26 0.93 16 35 H 0.05 1.22 5.50 -51.93 -0.29 0.93 16 36 H 0.04 0.92 6.77 -51.93 -0.35 0.57 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 39 H 0.15 1.62 3.79 -52.49 -0.20 1.42 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -37.10 373.89 -6.70 -43.80 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.09 Total: -1.17 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.72 Total: 7.99 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.38 Total: -54.67 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.23 Total: -18.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.10 -6.70 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.964 kcal (2) G-P(sol) polarization free energy of solvation -37.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds