Wall clock time and date at job start Tue Mar 31 2020 16:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99658 * 2 1 4 4 C 1.53008 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47278 * 67.52218 * 4 3 2 6 6 C 1.46510 * 119.99956 * 278.27289 * 5 4 3 7 7 C 1.50698 * 109.47112 * 269.99928 * 6 5 4 8 8 H 1.08001 * 119.99794 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99673 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99251 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00272 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47357 * 89.99685 * 11 9 7 13 13 H 1.48505 * 109.47073 * 210.00023 * 11 9 7 14 14 H 1.48501 * 109.47062 * 329.99791 * 11 9 7 15 15 C 1.34777 * 120.00037 * 98.27289 * 5 4 3 16 16 O 1.21572 * 119.99918 * 186.12616 * 15 5 4 17 17 C 1.47683 * 119.99789 * 6.12335 * 15 5 4 18 18 C 1.40186 * 120.40524 * 135.26785 * 17 15 5 19 19 N 1.31188 * 121.37415 * 180.23359 * 18 17 15 20 20 C 1.32932 * 121.84062 * 359.47996 * 19 18 17 21 21 C 1.41069 * 120.20458 * 0.51164 * 20 19 18 22 22 C 1.39506 * 120.40990 * 315.24647 * 17 15 5 23 23 C 1.45974 * 106.43419 * 179.73164 * 21 20 19 24 24 C 1.50694 * 126.20674 * 179.97438 * 23 21 20 25 25 N 1.30202 * 107.58552 * 0.02562 * 23 21 20 26 26 N 1.36632 * 133.26630 * 180.16443 * 20 19 18 27 27 C 1.46502 * 125.34068 * 0.31597 * 26 20 19 28 28 H 1.08995 * 109.47349 * 300.00046 * 1 2 3 29 29 H 1.09006 * 109.47020 * 60.00473 * 1 2 3 30 30 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99626 * 3 2 1 32 32 H 1.09004 * 109.47003 * 299.99041 * 3 2 1 33 33 H 1.08999 * 109.46631 * 307.52686 * 4 3 2 34 34 H 1.08992 * 109.47203 * 187.52297 * 4 3 2 35 35 H 1.09000 * 109.46852 * 30.00362 * 6 5 4 36 36 H 1.09002 * 109.47030 * 149.99755 * 6 5 4 37 37 H 0.97003 * 119.99342 * 179.97438 * 10 9 7 38 38 H 1.08001 * 119.31749 * 359.96023 * 18 17 15 39 39 H 1.07995 * 121.02682 * 0.02562 * 22 17 15 40 40 H 1.09000 * 109.47306 * 90.00205 * 24 23 21 41 41 H 1.08999 * 109.47092 * 210.00098 * 24 23 21 42 42 H 1.08994 * 109.47537 * 330.00459 * 24 23 21 43 43 H 1.09006 * 109.46954 * 90.00357 * 27 26 20 44 44 H 1.08994 * 109.47044 * 209.99759 * 27 26 20 45 45 H 1.08995 * 109.47360 * 330.00357 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9801 0.6201 -1.2772 6 6 3.9377 -0.8286 -1.4918 7 6 5.2440 -1.4396 -1.0547 8 1 6.0274 -0.8118 -0.6564 9 6 5.4387 -2.8004 -1.1622 10 7 6.5790 -3.3335 -0.7812 11 14 4.0835 -3.8863 -1.8503 12 1 4.2388 -3.9985 -3.3228 13 1 4.1728 -5.2367 -1.2388 14 1 2.7616 -3.2871 -1.5362 15 6 4.4283 1.4332 -2.2542 16 8 4.6919 0.9784 -3.3504 17 6 4.5991 2.8767 -1.9930 18 6 5.7545 3.5437 -2.4234 19 7 5.9279 4.8244 -2.1977 20 6 5.0169 5.5540 -1.5615 21 6 3.8268 4.9559 -1.0968 22 6 3.6124 3.5933 -1.3155 23 6 3.0587 6.0142 -0.4481 24 6 1.7093 5.8621 0.2052 25 7 3.7505 7.1136 -0.5373 26 7 4.9521 6.8727 -1.2100 27 6 5.9804 7.8769 -1.4939 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8485 0.5319 0.8141 34 1 3.9781 2.1717 0.1339 35 1 3.1226 -1.2583 -0.9095 36 1 3.7762 -1.0346 -2.5499 37 1 6.7158 -4.2909 -0.8565 38 1 6.5199 2.9910 -2.9479 39 1 2.7106 3.1094 -0.9707 40 1 1.8413 5.6092 1.2572 41 1 1.1582 6.7990 0.1231 42 1 1.1522 5.0682 -0.2921 43 1 5.7776 8.3419 -2.4587 44 1 5.9696 8.6385 -0.7142 45 1 6.9590 7.3976 -1.5201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:55 Heat of formation + Delta-G solvation = 16.695563 kcal Electronic energy + Delta-G solvation = -29083.574178 eV Core-core repulsion = 25102.874559 eV Total energy + Delta-G solvation = -3980.699620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.82527 -41.07569 -39.00985 -38.69491 -36.67036 -35.55675 -34.75497 -33.19710 -31.55747 -31.25789 -30.43467 -29.49310 -27.14680 -26.86702 -25.31515 -24.79085 -24.08404 -23.52121 -21.11966 -20.49599 -19.09874 -18.91656 -18.37876 -17.87260 -17.58764 -17.08362 -16.95425 -16.78406 -16.42973 -16.09926 -15.85487 -15.31990 -15.01384 -14.75649 -14.52892 -14.45416 -14.39871 -14.27630 -13.93370 -13.72267 -13.64738 -13.28737 -13.17547 -13.09859 -12.96310 -12.70968 -12.65898 -12.43907 -12.14494 -12.03506 -11.95821 -11.70278 -11.44462 -11.08493 -10.77764 -10.57919 -10.48192 -10.17322 -9.50093 -9.29945 -8.29744 -6.33593 -0.44173 -0.25117 1.03509 1.26766 1.36479 1.39436 1.50080 1.68358 2.15964 2.35754 2.56270 2.89723 2.96985 3.06353 3.07454 3.32797 3.46692 3.62295 3.90758 4.08374 4.11103 4.22626 4.29594 4.31274 4.36285 4.40198 4.50495 4.60579 4.62581 4.68752 4.75667 4.81268 4.85554 4.92808 4.95947 4.97299 5.01100 5.07581 5.14970 5.44786 5.49830 5.59542 5.65488 6.26729 6.29777 6.34964 6.60956 6.67329 6.69545 7.19117 7.33928 8.87072 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003751 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.191473 B = 7462.734013 C = 8870.975919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.041 3.959 4 C 0.092 3.908 5 N -0.582 5.582 6 C 0.232 3.768 7 C -0.535 4.535 8 H 0.031 0.969 9 C 0.014 3.986 10 N -0.946 5.946 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.238 1.238 15 C 0.558 3.442 16 O -0.583 6.583 17 C -0.227 4.227 18 C 0.214 3.786 19 N -0.515 5.515 20 C 0.307 3.693 21 C -0.237 4.237 22 C 0.047 3.953 23 C 0.128 3.872 24 C -0.080 4.080 25 N -0.259 5.259 26 N -0.401 5.401 27 C 0.105 3.895 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.016 0.984 37 H 0.267 0.733 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 21.919 5.043 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.036 4.036 4 C -0.030 4.030 5 N -0.310 5.310 6 C 0.110 3.890 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.184 4.184 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.202 1.202 13 H -0.201 1.201 14 H -0.161 1.161 15 C 0.346 3.654 16 O -0.464 6.464 17 C -0.235 4.235 18 C 0.045 3.955 19 N -0.230 5.230 20 C 0.067 3.933 21 C -0.247 4.247 22 C 0.019 3.981 23 C -0.051 4.051 24 C -0.138 4.138 25 N -0.073 5.073 26 N -0.190 5.190 27 C -0.035 4.035 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.187 0.813 39 H 0.194 0.806 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.595 23.254 4.518 27.313 hybrid contribution -0.137 -1.942 -0.562 2.026 sum -13.732 21.313 3.956 25.660 Atomic orbital electron populations 1.22916 0.79678 1.03317 1.01218 1.88024 1.21403 1.28297 1.95560 1.23297 0.92176 0.85582 1.02545 1.22114 0.94265 1.00825 0.85815 1.47803 1.61424 1.07414 1.14400 1.19362 0.96107 0.77073 0.96444 1.21599 1.00508 0.93096 1.42191 0.95112 1.25765 0.98114 0.99451 0.95066 1.70052 1.26338 1.12654 1.49546 0.85783 0.80839 0.78209 0.78629 1.20171 1.20111 1.16090 1.18331 0.77031 0.85984 0.84048 1.90731 1.52839 1.77645 1.25145 1.20518 1.00007 0.94149 1.08851 1.22774 0.94658 0.87624 0.90445 1.66764 1.30773 1.06881 1.18549 1.19507 0.91899 0.87671 0.94264 1.20510 0.98163 0.95563 1.10470 1.21737 0.97681 0.90588 0.88087 1.24223 0.98034 0.87112 0.95740 1.20607 0.86344 1.05485 1.01384 1.76662 0.93182 1.23323 1.14106 1.48354 1.17114 1.04816 1.48714 1.22069 0.87754 0.90236 1.03416 0.91616 0.93355 0.90016 0.87598 0.91949 0.90275 0.86995 0.91991 0.96615 0.92368 0.81316 0.80573 0.87347 0.88686 0.87767 0.90034 0.87489 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -11.42 8.92 -148.98 -1.33 -12.75 16 3 C 0.04 0.86 5.24 71.98 0.38 1.24 16 4 C 0.09 2.71 5.34 86.38 0.46 3.17 16 5 N -0.58 -23.75 2.46 -829.73 -2.04 -25.80 16 6 C 0.23 11.53 4.14 85.63 0.35 11.88 16 7 C -0.54 -31.90 9.94 25.60 0.25 -31.65 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.83 5.47 84.65 0.46 1.30 16 10 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 11 Si 0.94 45.42 27.47 68.60 1.88 47.30 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 15 C 0.56 23.20 7.29 86.74 0.63 23.83 16 16 O -0.58 -29.55 16.54 -3.94 -0.07 -29.61 16 17 C -0.23 -7.35 5.13 -20.00 -0.10 -7.45 16 18 C 0.21 6.96 10.82 85.26 0.92 7.88 16 19 N -0.51 -15.72 10.37 -191.96 -1.99 -17.71 16 20 C 0.31 8.45 7.96 134.17 1.07 9.52 16 21 C -0.24 -5.59 6.33 -20.24 -0.13 -5.72 16 22 C 0.05 1.12 7.55 22.92 0.17 1.29 16 23 C 0.13 2.34 7.44 44.80 0.33 2.67 16 24 C -0.08 -0.62 10.48 71.23 0.75 0.12 16 25 N -0.26 -5.62 12.39 -43.69 -0.54 -6.16 16 26 N -0.40 -9.40 4.03 -366.43 -1.48 -10.87 16 27 C 0.11 1.66 11.43 127.77 1.46 3.12 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.15 6.41 -2.39 -0.02 1.13 16 33 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.11 2.74 4.97 -2.39 -0.01 2.73 16 35 H 0.06 2.95 5.50 -2.39 -0.01 2.94 16 36 H 0.02 0.84 6.77 -2.39 -0.02 0.83 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.17 5.52 8.06 -2.91 -0.02 5.50 16 39 H 0.18 3.12 3.79 -2.91 -0.01 3.11 16 40 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -85.86 373.89 3.97 -81.90 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.97 Total: 10.93 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 8.26 Total: 22.91 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.75 Total: -120.67 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.39 Total: -42.36 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -85.86 3.97 -81.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.591 kcal (2) G-P(sol) polarization free energy of solvation -85.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds