Wall clock time and date at job start Tue Mar 31 2020 16:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99554 * 2 1 4 4 H 1.48508 * 109.47061 * 270.00195 * 3 2 1 5 5 H 1.48494 * 109.47249 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47098 * 150.00638 * 3 2 1 7 7 C 1.37876 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.34984 * 125.97221 * 124.97021 * 10 9 7 12 12 C 1.35216 * 107.87641 * 179.73105 * 11 10 9 13 13 C 1.40466 * 107.86634 * 0.43675 * 12 11 10 14 14 N 1.39929 * 125.98287 * 179.82993 * 13 12 11 15 15 C 1.34774 * 119.99512 * 359.70837 * 14 13 12 16 16 O 1.21382 * 120.00582 * 0.02562 * 15 14 13 17 17 C 1.49349 * 119.99546 * 180.02562 * 15 14 13 18 18 O 1.21357 * 119.99960 * 359.97438 * 17 15 14 19 19 N 1.34782 * 119.99973 * 180.02562 * 17 15 14 20 20 C 1.49242 * 126.07685 * 179.97438 * 19 17 15 21 21 C 1.49871 * 104.68796 * 186.50250 * 20 19 17 22 22 H 1.09001 * 108.89999 * 78.07774 * 21 20 19 23 23 C 1.50019 * 127.33756 * 211.85203 * 21 20 19 24 24 C 1.56186 * 103.78465 * 149.40248 * 23 21 20 25 25 C 1.56445 * 105.66258 * 353.09465 * 24 23 21 26 26 C 1.51948 * 101.41543 * 333.62324 * 25 24 23 27 27 H 1.09003 * 111.84926 * 289.50505 * 26 25 24 28 28 C 1.49595 * 126.07452 * 359.97149 * 19 17 15 29 29 N 1.31279 * 108.03408 * 359.55828 * 13 12 11 30 30 H 0.96996 * 120.00544 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47285 * 60.00060 * 9 7 2 32 32 H 1.09003 * 109.47370 * 300.00131 * 9 7 2 33 33 H 1.07999 * 126.06327 * 0.02562 * 11 10 9 34 34 H 1.07994 * 126.07024 * 180.29090 * 12 11 10 35 35 H 0.96992 * 120.00051 * 179.71391 * 14 13 12 36 36 H 1.09001 * 110.39701 * 67.70193 * 20 19 17 37 37 H 1.08997 * 110.49375 * 305.34799 * 20 19 17 38 38 H 1.09001 * 110.55762 * 30.82910 * 23 21 20 39 39 H 1.08998 * 110.56141 * 267.97944 * 23 21 20 40 40 H 1.09002 * 110.22384 * 112.16662 * 24 23 21 41 41 H 1.08997 * 110.22451 * 234.02487 * 24 23 21 42 42 H 1.08999 * 111.02906 * 91.61108 * 25 24 23 43 43 H 1.08999 * 111.02549 * 215.52224 * 25 24 23 44 44 H 1.09000 * 110.81160 * 324.02625 * 28 19 17 45 45 H 1.08996 * 110.80894 * 87.34531 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4002 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2425 -4.6221 0.8947 12 6 3.2569 -5.4459 0.5470 13 6 3.8692 -4.9151 -0.6004 14 7 4.9630 -5.4653 -1.2777 15 6 5.5272 -6.6054 -0.8324 16 8 5.0862 -7.1552 0.1559 17 6 6.6950 -7.1923 -1.5550 18 8 7.1356 -6.6430 -2.5433 19 7 7.2590 -8.3328 -1.1100 20 6 8.4241 -9.0348 -1.7240 21 6 8.5449 -10.3152 -0.9544 22 1 7.7874 -11.0136 -1.3099 23 6 9.8004 -11.0759 -0.6451 24 6 9.4925 -11.7613 0.7241 25 6 8.1143 -11.1825 1.1857 26 6 8.1049 -9.8339 0.4857 27 1 8.8261 -9.1442 0.9242 28 6 6.8283 -9.1197 0.0871 29 7 3.2318 -3.8156 -0.9294 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 1.5783 -4.7518 1.7363 34 1 3.5467 -6.3500 1.0617 35 1 5.3152 -5.0262 -2.0675 36 1 9.3292 -8.4378 -1.6124 37 1 8.2335 -9.2413 -2.7771 38 1 10.6468 -10.3955 -0.5509 39 1 9.9934 -11.8247 -1.4133 40 1 9.4241 -12.8418 0.5977 41 1 10.2667 -11.5157 1.4510 42 1 7.2916 -11.8080 0.8394 43 1 8.0834 -11.0627 2.2687 44 1 6.4898 -8.4580 0.8843 45 1 6.0486 -9.8334 -0.1787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133321697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:29 Heat of formation + Delta-G solvation = 37.361554 kcal Electronic energy + Delta-G solvation = -27657.277208 eV Core-core repulsion = 23677.473733 eV Total energy + Delta-G solvation = -3979.803475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34767 -40.65965 -39.66200 -38.23273 -35.67965 -34.68560 -33.36435 -31.05012 -30.85491 -30.00838 -29.41848 -27.11618 -26.69018 -25.33805 -23.49383 -22.56843 -21.15085 -20.76776 -20.22206 -20.03338 -19.40499 -17.80184 -17.18450 -16.61875 -16.45131 -16.42983 -16.02462 -15.32396 -15.15096 -15.02634 -14.76525 -14.36034 -14.20526 -14.08961 -13.65849 -13.36764 -12.91950 -12.81373 -12.57605 -12.41678 -12.29429 -12.03903 -11.82046 -11.71274 -11.65712 -11.41444 -11.20277 -11.05686 -10.89520 -10.88068 -10.54475 -10.43207 -10.27627 -10.01462 -9.54743 -9.46452 -9.11093 -8.64993 -8.23148 -7.58260 -6.26113 -4.31288 1.22264 1.91357 2.66367 2.99409 3.03785 3.23907 3.29726 3.34820 3.42156 3.66416 3.75495 4.17800 4.25808 4.30958 4.37060 4.54672 4.73695 4.81921 4.87476 4.98906 5.09219 5.13840 5.18422 5.28129 5.34467 5.42048 5.47940 5.50332 5.54404 5.57236 5.67977 5.71725 5.78024 5.88419 5.94649 6.11280 6.34292 6.42190 6.79040 6.90466 7.01260 7.23302 7.28752 7.59018 7.68771 7.84843 7.96460 7.97565 8.53952 8.77353 9.34614 10.82658 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002063 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.993019 B =13567.331979 C =14003.183725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.314 5.314 11 C 0.053 3.947 12 C -0.285 4.285 13 C 0.251 3.749 14 N -0.599 5.599 15 C 0.516 3.484 16 O -0.496 6.496 17 C 0.530 3.470 18 O -0.518 6.518 19 N -0.599 5.599 20 C 0.130 3.870 21 C -0.130 4.130 22 H 0.079 0.921 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.104 4.104 26 C -0.126 4.126 27 H 0.091 0.909 28 C 0.113 3.887 29 N -0.295 5.295 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.423 0.577 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.761 -24.574 1.634 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.316 4.316 13 C -0.002 4.002 14 N -0.247 5.247 15 C 0.296 3.704 16 O -0.369 6.369 17 C 0.313 3.687 18 O -0.394 6.394 19 N -0.335 5.335 20 C 0.009 3.991 21 C -0.149 4.149 22 H 0.098 0.902 23 C -0.137 4.137 24 C -0.161 4.161 25 C -0.142 4.142 26 C -0.145 4.145 27 H 0.110 0.890 28 C -0.008 4.008 29 N -0.126 5.126 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.178 0.822 35 H 0.260 0.740 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.310 -23.396 0.937 28.535 hybrid contribution 0.502 0.582 0.102 0.775 sum 16.812 -22.813 1.039 28.358 Atomic orbital electron populations 1.69912 1.06034 1.27684 1.49664 1.24944 0.94998 0.99581 0.94535 0.86315 0.79644 0.82052 0.78424 1.20287 1.20978 1.19708 1.21247 0.94019 0.89330 1.52213 0.91255 1.19799 0.85564 0.81234 0.99428 1.49167 1.22970 1.19698 1.17804 1.22579 1.00283 0.90052 0.96772 1.21505 1.02205 1.06272 1.01665 1.19010 0.91409 0.94739 0.94992 1.41990 1.28867 1.23667 1.30151 1.19805 0.84232 0.81270 0.85068 1.90654 1.61664 1.59797 1.24827 1.19559 0.83921 0.80680 0.84586 1.90795 1.63090 1.59955 1.25557 1.49463 1.31903 1.22907 1.29231 1.21083 0.88570 0.92079 0.97330 1.21971 1.00145 0.96247 0.96532 0.90229 1.21431 0.96211 0.98733 0.97285 1.23022 0.96902 1.00018 0.96120 1.21979 0.97628 0.94337 1.00250 1.22879 0.98086 0.97343 0.96185 0.89030 1.22138 0.95639 0.95383 0.87625 1.77413 1.03313 1.15931 1.15953 0.92291 0.93547 0.92371 0.81249 0.82153 0.73978 0.90680 0.90303 0.91220 0.91193 0.91394 0.91307 0.90849 0.90930 0.87545 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.46 6.26 -5.20 -0.03 6.43 16 10 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.41 9.60 -39.82 -0.38 -5.79 16 13 C 0.25 5.04 8.10 -154.54 -1.25 3.79 16 14 N -0.60 -10.04 5.43 -11.58 -0.06 -10.10 16 15 C 0.52 7.81 7.83 -11.63 -0.09 7.72 16 16 O -0.50 -7.73 10.94 5.47 0.06 -7.67 16 17 C 0.53 7.23 7.94 -11.63 -0.09 7.14 16 18 O -0.52 -8.08 16.84 5.49 0.09 -7.99 16 19 N -0.60 -6.43 3.42 -172.04 -0.59 -7.02 16 20 C 0.13 1.07 6.82 -4.07 -0.03 1.04 16 21 C -0.13 -0.78 2.63 -90.85 -0.24 -1.02 16 22 H 0.08 0.49 7.95 -51.93 -0.41 0.07 16 23 C -0.10 -0.45 6.74 -26.50 -0.18 -0.63 16 24 C -0.12 -0.51 6.95 -23.17 -0.16 -0.67 16 25 C -0.10 -0.51 6.60 -25.41 -0.17 -0.68 16 26 C -0.13 -0.82 3.17 -89.06 -0.28 -1.10 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 C 0.11 1.00 5.86 -3.02 -0.02 0.98 16 29 N -0.29 -6.81 12.42 31.41 0.39 -6.42 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 34 H 0.16 2.82 5.91 -52.49 -0.31 2.51 16 35 H 0.42 6.58 8.29 -40.82 -0.34 6.24 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.35 8.13 -51.93 -0.42 -0.08 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.11 1.10 6.19 -51.93 -0.32 0.78 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -31.64 371.64 -8.98 -40.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.42 Total: 3.81 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -3.54 Total: 4.65 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.25 Total: -55.43 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.15 Total: -15.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.64 -8.98 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133321697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.985 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds