Wall clock time and date at job start Tue Mar 31 2020 16:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99554 * 2 1 4 4 H 1.48508 * 109.47061 * 270.00195 * 3 2 1 5 5 H 1.48494 * 109.47249 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47098 * 150.00638 * 3 2 1 7 7 C 1.37876 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.34984 * 125.97221 * 124.97021 * 10 9 7 12 12 C 1.35216 * 107.87641 * 179.73105 * 11 10 9 13 13 C 1.40466 * 107.86634 * 0.43675 * 12 11 10 14 14 N 1.39929 * 125.98287 * 179.82993 * 13 12 11 15 15 C 1.34774 * 119.99512 * 359.70837 * 14 13 12 16 16 O 1.21382 * 120.00582 * 0.02562 * 15 14 13 17 17 C 1.49349 * 119.99546 * 180.02562 * 15 14 13 18 18 O 1.21357 * 119.99960 * 359.97438 * 17 15 14 19 19 N 1.34782 * 119.99973 * 180.02562 * 17 15 14 20 20 C 1.49242 * 126.07685 * 179.97438 * 19 17 15 21 21 C 1.49871 * 104.68796 * 186.50250 * 20 19 17 22 22 H 1.09001 * 108.89999 * 78.07774 * 21 20 19 23 23 C 1.50019 * 127.33756 * 211.85203 * 21 20 19 24 24 C 1.56186 * 103.78465 * 149.40248 * 23 21 20 25 25 C 1.56445 * 105.66258 * 353.09465 * 24 23 21 26 26 C 1.51948 * 101.41543 * 333.62324 * 25 24 23 27 27 H 1.09003 * 111.84926 * 289.50505 * 26 25 24 28 28 C 1.49595 * 126.07452 * 359.97149 * 19 17 15 29 29 N 1.31279 * 108.03408 * 359.55828 * 13 12 11 30 30 H 0.96996 * 120.00544 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47285 * 60.00060 * 9 7 2 32 32 H 1.09003 * 109.47370 * 300.00131 * 9 7 2 33 33 H 1.07999 * 126.06327 * 0.02562 * 11 10 9 34 34 H 1.07994 * 126.07024 * 180.29090 * 12 11 10 35 35 H 0.96992 * 120.00051 * 179.71391 * 14 13 12 36 36 H 1.09001 * 110.39701 * 67.70193 * 20 19 17 37 37 H 1.08997 * 110.49375 * 305.34799 * 20 19 17 38 38 H 1.09001 * 110.55762 * 30.82910 * 23 21 20 39 39 H 1.08998 * 110.56141 * 267.97944 * 23 21 20 40 40 H 1.09002 * 110.22384 * 112.16662 * 24 23 21 41 41 H 1.08997 * 110.22451 * 234.02487 * 24 23 21 42 42 H 1.08999 * 111.02906 * 91.61108 * 25 24 23 43 43 H 1.08999 * 111.02549 * 215.52224 * 25 24 23 44 44 H 1.09000 * 110.81160 * 324.02625 * 28 19 17 45 45 H 1.08996 * 110.80894 * 87.34531 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4002 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2425 -4.6221 0.8947 12 6 3.2569 -5.4459 0.5470 13 6 3.8692 -4.9151 -0.6004 14 7 4.9630 -5.4653 -1.2777 15 6 5.5272 -6.6054 -0.8324 16 8 5.0862 -7.1552 0.1559 17 6 6.6950 -7.1923 -1.5550 18 8 7.1356 -6.6430 -2.5433 19 7 7.2590 -8.3328 -1.1100 20 6 8.4241 -9.0348 -1.7240 21 6 8.5449 -10.3152 -0.9544 22 1 7.7874 -11.0136 -1.3099 23 6 9.8004 -11.0759 -0.6451 24 6 9.4925 -11.7613 0.7241 25 6 8.1143 -11.1825 1.1857 26 6 8.1049 -9.8339 0.4857 27 1 8.8261 -9.1442 0.9242 28 6 6.8283 -9.1197 0.0871 29 7 3.2318 -3.8156 -0.9294 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 1.5783 -4.7518 1.7363 34 1 3.5467 -6.3500 1.0617 35 1 5.3152 -5.0262 -2.0675 36 1 9.3292 -8.4378 -1.6124 37 1 8.2335 -9.2413 -2.7771 38 1 10.6468 -10.3955 -0.5509 39 1 9.9934 -11.8247 -1.4133 40 1 9.4241 -12.8418 0.5977 41 1 10.2667 -11.5157 1.4510 42 1 7.2916 -11.8080 0.8394 43 1 8.0834 -11.0627 2.2687 44 1 6.4898 -8.4580 0.8843 45 1 6.0486 -9.8334 -0.1787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133321697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:28 Heat of formation + Delta-G solvation = 18.187187 kcal Electronic energy + Delta-G solvation = -27658.108671 eV Core-core repulsion = 23677.473733 eV Total energy + Delta-G solvation = -3980.634938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51921 -41.85381 -40.71741 -39.37324 -36.73593 -35.87247 -35.25380 -32.84463 -31.43698 -31.02900 -30.72783 -28.81483 -27.39500 -26.50551 -24.90478 -23.83046 -22.51815 -21.56494 -21.31395 -20.75959 -20.57029 -18.88788 -18.71905 -18.33309 -17.81879 -17.46997 -17.00242 -16.88811 -16.30774 -15.97079 -15.75500 -15.62640 -15.47514 -14.87877 -14.76004 -14.64018 -14.25463 -14.11908 -13.88204 -13.72543 -13.38337 -13.22650 -12.99346 -12.80137 -12.66877 -12.42860 -12.32054 -12.16116 -12.06851 -12.01475 -11.70520 -11.63949 -11.43986 -11.24970 -11.00271 -10.73811 -10.64819 -10.01210 -9.83714 -9.22374 -8.34615 -6.48061 0.01858 0.75758 1.12637 1.37099 1.38604 1.49259 1.71174 1.72591 2.23377 2.30433 2.40604 2.87835 2.97636 3.12313 3.69586 3.79081 3.90285 4.06727 4.20603 4.25432 4.30738 4.35104 4.47645 4.56937 4.63593 4.69055 4.74802 4.78111 4.83722 4.86539 4.88962 4.91066 4.97175 5.01927 5.11444 5.15639 5.24843 5.30507 5.46785 5.54990 5.55178 5.74817 5.77218 5.87613 6.02527 6.24304 6.41880 6.63038 6.71270 6.95483 7.21784 8.73191 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.002063 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.993019 B =13567.331979 C =14003.183725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.271 3.729 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.286 4.286 13 C 0.258 3.742 14 N -0.602 5.602 15 C 0.519 3.481 16 O -0.498 6.498 17 C 0.532 3.468 18 O -0.544 6.544 19 N -0.593 5.593 20 C 0.125 3.875 21 C -0.120 4.120 22 H 0.083 0.917 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.101 4.101 26 C -0.121 4.121 27 H 0.088 0.912 28 C 0.109 3.891 29 N -0.343 5.343 30 H 0.273 0.727 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.178 0.822 35 H 0.426 0.574 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.183 -26.296 2.555 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.152 3.848 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.317 4.317 13 C 0.005 3.995 14 N -0.251 5.251 15 C 0.301 3.699 16 O -0.371 6.371 17 C 0.313 3.687 18 O -0.422 6.422 19 N -0.327 5.327 20 C 0.005 3.995 21 C -0.139 4.139 22 H 0.101 0.899 23 C -0.134 4.134 24 C -0.157 4.157 25 C -0.139 4.139 26 C -0.141 4.141 27 H 0.106 0.894 28 C -0.011 4.011 29 N -0.174 5.174 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.195 0.805 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.755 -25.180 1.881 30.868 hybrid contribution 0.121 0.951 -0.156 0.971 sum 17.876 -24.229 1.725 30.159 Atomic orbital electron populations 1.69981 1.07100 1.28778 1.49864 1.25712 0.95858 1.02639 0.93919 0.85370 0.78392 0.78299 0.78486 1.19991 1.19538 1.19814 1.21391 0.93348 0.91041 1.52886 0.93069 1.19394 0.85604 0.81357 0.98400 1.48912 1.23513 1.20426 1.19296 1.23258 1.00416 0.88448 0.96646 1.21748 1.01949 1.06657 1.01303 1.19320 0.91377 0.93819 0.95026 1.42107 1.28363 1.24283 1.30351 1.20170 0.84346 0.80534 0.84898 1.90637 1.61810 1.59711 1.24934 1.19201 0.83603 0.81520 0.84344 1.90785 1.63790 1.61005 1.26599 1.49656 1.31807 1.21798 1.29428 1.21291 0.87550 0.92989 0.97680 1.21944 1.01294 0.95225 0.95468 0.89862 1.21462 0.95306 0.98783 0.97855 1.23010 0.96367 1.00511 0.95803 1.22006 0.98399 0.93159 1.00373 1.22836 0.96420 0.97929 0.96877 0.89404 1.22247 0.97198 0.95141 0.86501 1.77325 1.04657 1.17954 1.17452 0.91805 0.95933 0.91832 0.77543 0.80528 0.73556 0.90362 0.90149 0.91053 0.90141 0.90395 0.90889 0.90385 0.90550 0.88994 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.96 13.29 21.45 0.28 -51.67 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.55 -31.03 9.24 25.60 0.24 -30.80 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.27 13.95 6.26 85.63 0.54 14.49 16 10 N -0.34 -15.78 3.67 -351.85 -1.29 -17.07 16 11 C 0.06 2.29 11.43 83.51 0.95 3.25 16 12 C -0.29 -10.58 9.60 22.12 0.21 -10.36 16 13 C 0.26 10.43 8.10 133.40 1.08 11.51 16 14 N -0.60 -20.35 5.43 -308.89 -1.68 -22.02 16 15 C 0.52 15.55 7.83 87.24 0.68 16.24 16 16 O -0.50 -15.06 10.94 -3.35 -0.04 -15.10 16 17 C 0.53 14.31 7.94 87.24 0.69 15.01 16 18 O -0.54 -16.96 16.84 -3.27 -0.06 -17.02 16 19 N -0.59 -12.14 3.42 -816.57 -2.80 -14.93 16 20 C 0.12 1.87 6.82 84.84 0.58 2.45 16 21 C -0.12 -1.18 2.63 -10.95 -0.03 -1.21 16 22 H 0.08 0.80 7.95 -2.39 -0.02 0.78 16 23 C -0.10 -0.61 6.74 30.74 0.21 -0.40 16 24 C -0.12 -0.65 6.95 32.90 0.23 -0.42 16 25 C -0.10 -0.74 6.60 31.45 0.21 -0.53 16 26 C -0.12 -1.34 3.17 -9.78 -0.03 -1.37 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 C 0.11 1.79 5.86 85.32 0.50 2.29 16 29 N -0.34 -16.22 12.42 -54.53 -0.68 -16.89 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 3.15 8.07 -2.39 -0.02 3.13 16 33 H 0.21 5.91 8.06 -2.91 -0.02 5.89 16 34 H 0.18 5.91 5.91 -2.91 -0.02 5.90 16 35 H 0.43 13.63 8.29 -92.71 -0.77 12.87 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.52 8.13 -2.39 -0.02 0.50 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.09 1.81 6.19 -2.39 -0.01 1.79 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.28 371.64 2.55 -65.73 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.25 Total: 21.28 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.52 Total: 21.66 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.16 Total: -122.59 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.09 Total: -32.12 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.28 2.55 -65.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133321697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.920 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds