Wall clock time and date at job start Tue Mar 31 2020 16:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34970 * 125.98267 * 124.71531 * 10 9 7 12 12 C 1.35240 * 107.85535 * 179.89584 * 11 10 9 13 13 C 1.40374 * 107.87294 * 0.36416 * 12 11 10 14 14 N 1.40398 * 125.96966 * 179.75745 * 13 12 11 15 15 C 1.33736 * 124.16335 * 184.70207 * 14 13 12 16 16 O 1.21530 * 123.75479 * 0.06219 * 15 14 13 17 17 N 1.34400 * 112.48955 * 179.88725 * 15 14 13 18 18 C 1.47711 * 106.76271 * 0.49988 * 17 15 14 19 19 C 1.54548 * 107.76549 * 113.57303 * 18 17 15 20 20 C 1.50325 * 108.78731 * 45.27387 * 19 18 17 21 21 C 1.54139 * 112.70799 * 93.98919 * 20 19 18 22 22 C 1.54021 * 112.82280 * 318.14055 * 21 20 19 23 23 C 1.50513 * 112.30165 * 318.39280 * 22 21 20 24 24 C 1.45739 * 112.57332 * 237.85186 * 18 17 15 25 25 C 1.34662 * 124.16474 * 4.99291 * 14 13 12 26 26 O 1.21243 * 127.07753 * 359.81412 * 25 14 13 27 27 N 1.31195 * 108.06336 * 359.77337 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08002 * 126.06989 * 359.97438 * 11 10 9 32 32 H 1.07998 * 126.06345 * 180.14317 * 12 11 10 33 33 H 0.97002 * 126.61865 * 180.27735 * 17 15 14 34 34 H 1.09008 * 109.58548 * 165.06004 * 19 18 17 35 35 H 1.08997 * 109.58614 * 285.47748 * 19 18 17 36 36 H 1.08998 * 108.83073 * 333.15549 * 20 19 18 37 37 H 1.09006 * 108.83324 * 214.82392 * 20 19 18 38 38 H 1.09005 * 108.81278 * 197.27435 * 21 20 19 39 39 H 1.09008 * 108.72693 * 78.93779 * 21 20 19 40 40 H 1.09004 * 108.91308 * 197.67307 * 22 21 20 41 41 H 1.09000 * 108.91938 * 79.12739 * 22 21 20 42 42 H 1.09000 * 109.64230 * 334.65795 * 23 22 21 43 43 H 1.08999 * 109.64488 * 214.01803 * 23 22 21 44 44 H 1.09002 * 108.84293 * 60.66459 * 24 18 17 45 45 H 1.09000 * 108.84916 * 179.12044 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2453 -4.6236 0.8830 12 6 3.2612 -5.4445 0.5323 13 6 3.8693 -4.9115 -0.6152 14 7 4.9676 -5.4596 -1.2966 15 6 5.5757 -4.8748 -2.3342 16 8 5.2399 -3.8023 -2.7969 17 7 6.6018 -5.6033 -2.8061 18 6 6.6704 -6.8268 -1.9814 19 6 6.3173 -8.0273 -2.8883 20 6 7.0611 -7.8881 -4.1872 21 6 8.4021 -8.6481 -4.1894 22 6 9.1773 -8.4958 -2.8672 23 6 9.1270 -7.0890 -2.3344 24 6 7.9636 -6.9902 -1.3294 25 6 5.5349 -6.6416 -0.9894 26 8 5.2069 -7.4016 -0.1035 27 7 3.2322 -3.8114 -0.9394 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5844 -4.7544 1.7272 32 1 3.5550 -6.3479 1.0461 33 1 7.1829 -5.3720 -3.5475 34 1 6.6106 -8.9551 -2.3970 35 1 5.2445 -8.0367 -3.0808 36 1 7.2553 -6.8312 -4.3699 37 1 6.4368 -8.2735 -4.9933 38 1 9.0193 -8.2698 -5.0044 39 1 8.2044 -9.7063 -4.3609 40 1 10.2181 -8.7735 -3.0339 41 1 8.7479 -9.1699 -2.1261 42 1 8.9618 -6.3918 -3.1558 43 1 10.0656 -6.8534 -1.8328 44 1 8.1371 -6.1376 -0.6729 45 1 7.9422 -7.8987 -0.7275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286252401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:11 Heat of formation + Delta-G solvation = 45.935882 kcal Electronic energy + Delta-G solvation = -29227.850199 eV Core-core repulsion = 25248.418535 eV Total energy + Delta-G solvation = -3979.431664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.99948 -40.45668 -38.87519 -38.48881 -35.78910 -34.67612 -33.36073 -32.76579 -31.29502 -30.86974 -29.49901 -27.16566 -25.91002 -25.35048 -23.89197 -23.35815 -21.97408 -21.04577 -19.98244 -19.79009 -19.15423 -17.92225 -16.91242 -16.65888 -16.58603 -16.52489 -15.79817 -15.59778 -15.21701 -14.89794 -14.70038 -14.29818 -14.09710 -14.01028 -13.88536 -13.51706 -13.44023 -12.97058 -12.61314 -12.57124 -12.30380 -12.06190 -11.78603 -11.68072 -11.36392 -11.07623 -11.04372 -10.84780 -10.81475 -10.74800 -10.63770 -10.62188 -10.26174 -10.17669 -9.75380 -9.58950 -9.53747 -8.60781 -8.37103 -7.74824 -6.22311 -4.26735 1.55926 1.98464 2.54334 2.89144 2.91745 3.29838 3.32382 3.38344 3.53562 3.69584 3.79160 3.99249 4.26502 4.35656 4.48972 4.54760 4.64773 4.75476 4.81914 4.94999 5.07111 5.13796 5.23209 5.29821 5.33670 5.36633 5.48432 5.59058 5.63917 5.70385 5.70976 5.74298 5.77417 5.87712 5.98365 6.00415 6.20514 6.41188 6.70818 6.76761 7.00513 7.04369 7.25180 7.41739 7.70541 7.86757 7.94280 8.24578 8.49114 8.81144 9.38919 10.86789 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.002948 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.600766 B = 9494.211677 C =10151.440391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.315 5.315 11 C 0.060 3.940 12 C -0.285 4.285 13 C 0.243 3.757 14 N -0.483 5.483 15 C 0.693 3.307 16 O -0.499 6.499 17 N -0.723 5.723 18 C 0.143 3.857 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.121 4.121 25 C 0.533 3.467 26 O -0.454 6.454 27 N -0.248 5.248 28 H 0.268 0.732 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.437 0.563 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.198 -19.882 -5.044 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.097 5.097 11 C -0.090 4.090 12 C -0.316 4.316 13 C -0.009 4.009 14 N -0.225 5.225 15 C 0.393 3.607 16 O -0.367 6.367 17 N -0.392 5.392 18 C 0.052 3.948 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.159 4.159 25 C 0.319 3.681 26 O -0.321 6.321 27 N -0.077 5.077 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.192 0.808 32 H 0.169 0.831 33 H 0.285 0.715 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.401 -18.435 -5.598 25.302 hybrid contribution 0.582 0.403 0.265 0.756 sum 16.983 -18.031 -5.333 25.337 Atomic orbital electron populations 1.69908 1.06028 1.27763 1.49730 1.24923 0.94987 0.99546 0.94475 0.86375 0.79395 0.81653 0.79055 1.19790 1.21031 1.20024 1.21215 0.94045 0.89289 1.52205 0.91260 1.19833 0.85484 0.81158 0.99513 1.49429 1.22893 1.19576 1.17812 1.22514 0.99900 0.89792 0.96831 1.21044 1.03010 1.06376 1.01188 1.18803 0.91239 0.95899 0.94919 1.42909 1.28438 1.20701 1.30474 1.15867 0.80668 0.84080 0.80074 1.91139 1.66333 1.18869 1.60325 1.45981 1.34800 1.21287 1.37176 1.20341 0.95565 0.88064 0.90829 1.21691 1.01352 0.96384 0.95763 1.21296 0.96278 1.01386 0.96897 1.21954 0.95554 1.00509 0.97551 1.21422 1.00345 0.96920 0.97451 1.21215 0.97473 0.97603 0.98423 1.20640 0.91680 1.04611 0.98954 1.20856 0.83297 0.79839 0.84137 1.90751 1.65024 1.46325 1.29987 1.77803 1.01294 1.14646 1.13940 0.92264 0.92229 0.93402 0.80818 0.83082 0.71512 0.89123 0.90743 0.91571 0.91186 0.91961 0.91959 0.91885 0.91554 0.91404 0.90740 0.90649 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.17 9.24 -34.44 -0.32 -15.49 16 8 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 9 C 0.26 6.63 6.26 -5.20 -0.03 6.60 16 10 N -0.31 -7.46 3.67 -62.57 -0.23 -7.69 16 11 C 0.06 1.15 11.44 -17.24 -0.20 0.96 16 12 C -0.28 -5.46 9.97 -39.85 -0.40 -5.86 16 13 C 0.24 5.19 7.66 -154.18 -1.18 4.00 16 14 N -0.48 -8.60 2.83 -65.75 -0.19 -8.79 16 15 C 0.69 11.91 8.58 -88.18 -0.76 11.15 16 16 O -0.50 -10.97 16.82 5.34 0.09 -10.88 16 17 N -0.72 -8.01 4.69 -55.06 -0.26 -8.27 16 18 C 0.14 1.39 0.80 -134.33 -0.11 1.29 16 19 C -0.11 -0.89 4.78 -27.25 -0.13 -1.02 16 20 C -0.12 -0.73 5.20 -27.47 -0.14 -0.88 16 21 C -0.12 -0.56 5.85 -25.60 -0.15 -0.71 16 22 C -0.12 -0.57 5.33 -27.44 -0.15 -0.72 16 23 C -0.11 -0.59 5.58 -27.42 -0.15 -0.74 16 24 C -0.12 -0.91 4.39 -29.61 -0.13 -1.04 16 25 C 0.53 7.63 6.69 -10.44 -0.07 7.56 16 26 O -0.45 -7.04 15.89 5.59 0.09 -6.95 16 27 N -0.25 -6.17 11.33 31.48 0.36 -5.81 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 30 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 32 H 0.15 2.61 6.68 -52.49 -0.35 2.26 16 33 H 0.44 3.69 6.37 -40.82 -0.26 3.43 16 34 H 0.09 0.60 7.03 -51.92 -0.36 0.24 16 35 H 0.07 0.68 7.90 -51.93 -0.41 0.27 16 36 H 0.07 0.41 4.60 -51.93 -0.24 0.17 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.31 6.65 -51.93 -0.35 -0.03 16 42 H 0.07 0.36 5.83 -51.93 -0.30 0.05 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.64 7.45 -51.93 -0.39 0.25 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -34.81 358.35 -9.04 -43.84 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.00 Total: 0.28 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -4.01 Total: 6.82 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.42 Total: -55.58 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.18 Total: -17.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.81 -9.04 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286252401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.779 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds