Wall clock time and date at job start Tue Mar 31 2020 16:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34970 * 125.98267 * 124.71531 * 10 9 7 12 12 C 1.35240 * 107.85535 * 179.89584 * 11 10 9 13 13 C 1.40374 * 107.87294 * 0.36416 * 12 11 10 14 14 N 1.40398 * 125.96966 * 179.75745 * 13 12 11 15 15 C 1.33736 * 124.16335 * 184.70207 * 14 13 12 16 16 O 1.21530 * 123.75479 * 0.06219 * 15 14 13 17 17 N 1.34400 * 112.48955 * 179.88725 * 15 14 13 18 18 C 1.47711 * 106.76271 * 0.49988 * 17 15 14 19 19 C 1.54548 * 107.76549 * 113.57303 * 18 17 15 20 20 C 1.50325 * 108.78731 * 45.27387 * 19 18 17 21 21 C 1.54139 * 112.70799 * 93.98919 * 20 19 18 22 22 C 1.54021 * 112.82280 * 318.14055 * 21 20 19 23 23 C 1.50513 * 112.30165 * 318.39280 * 22 21 20 24 24 C 1.45739 * 112.57332 * 237.85186 * 18 17 15 25 25 C 1.34662 * 124.16474 * 4.99291 * 14 13 12 26 26 O 1.21243 * 127.07753 * 359.81412 * 25 14 13 27 27 N 1.31195 * 108.06336 * 359.77337 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08002 * 126.06989 * 359.97438 * 11 10 9 32 32 H 1.07998 * 126.06345 * 180.14317 * 12 11 10 33 33 H 0.97002 * 126.61865 * 180.27735 * 17 15 14 34 34 H 1.09008 * 109.58548 * 165.06004 * 19 18 17 35 35 H 1.08997 * 109.58614 * 285.47748 * 19 18 17 36 36 H 1.08998 * 108.83073 * 333.15549 * 20 19 18 37 37 H 1.09006 * 108.83324 * 214.82392 * 20 19 18 38 38 H 1.09005 * 108.81278 * 197.27435 * 21 20 19 39 39 H 1.09008 * 108.72693 * 78.93779 * 21 20 19 40 40 H 1.09004 * 108.91308 * 197.67307 * 22 21 20 41 41 H 1.09000 * 108.91938 * 79.12739 * 22 21 20 42 42 H 1.09000 * 109.64230 * 334.65795 * 23 22 21 43 43 H 1.08999 * 109.64488 * 214.01803 * 23 22 21 44 44 H 1.09002 * 108.84293 * 60.66459 * 24 18 17 45 45 H 1.09000 * 108.84916 * 179.12044 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2453 -4.6236 0.8830 12 6 3.2612 -5.4445 0.5323 13 6 3.8693 -4.9115 -0.6152 14 7 4.9676 -5.4596 -1.2966 15 6 5.5757 -4.8748 -2.3342 16 8 5.2399 -3.8023 -2.7969 17 7 6.6018 -5.6033 -2.8061 18 6 6.6704 -6.8268 -1.9814 19 6 6.3173 -8.0273 -2.8883 20 6 7.0611 -7.8881 -4.1872 21 6 8.4021 -8.6481 -4.1894 22 6 9.1773 -8.4958 -2.8672 23 6 9.1270 -7.0890 -2.3344 24 6 7.9636 -6.9902 -1.3294 25 6 5.5349 -6.6416 -0.9894 26 8 5.2069 -7.4016 -0.1035 27 7 3.2322 -3.8114 -0.9394 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5844 -4.7544 1.7272 32 1 3.5550 -6.3479 1.0461 33 1 7.1829 -5.3720 -3.5475 34 1 6.6106 -8.9551 -2.3970 35 1 5.2445 -8.0367 -3.0808 36 1 7.2553 -6.8312 -4.3699 37 1 6.4368 -8.2735 -4.9933 38 1 9.0193 -8.2698 -5.0044 39 1 8.2044 -9.7063 -4.3609 40 1 10.2181 -8.7735 -3.0339 41 1 8.7479 -9.1699 -2.1261 42 1 8.9618 -6.3918 -3.1558 43 1 10.0656 -6.8534 -1.8328 44 1 8.1371 -6.1376 -0.6729 45 1 7.9422 -7.8987 -0.7275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286252401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:11 Heat of formation + Delta-G solvation = 23.705424 kcal Electronic energy + Delta-G solvation = -29228.814184 eV Core-core repulsion = 25248.418535 eV Total energy + Delta-G solvation = -3980.395649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.17665 -42.04122 -40.00444 -39.51362 -37.11907 -35.99835 -35.15929 -33.29661 -32.97729 -31.83529 -31.14980 -28.98492 -26.90330 -25.90930 -25.50389 -24.56193 -23.50802 -22.16305 -21.32420 -20.65169 -20.12109 -19.16974 -18.72836 -18.11507 -18.05066 -17.57864 -16.97785 -16.81886 -16.52151 -16.25211 -15.86504 -15.58223 -15.39225 -15.19405 -14.80655 -14.52633 -14.31833 -14.14284 -14.07392 -14.00892 -13.75982 -13.11204 -13.00786 -12.81806 -12.68319 -12.39869 -12.31496 -12.24072 -12.02265 -11.94082 -11.71098 -11.54586 -11.39450 -11.31501 -11.15499 -11.02877 -10.76246 -10.65079 -10.04727 -9.44956 -8.37980 -6.50676 0.35730 0.64930 0.93146 1.33308 1.36977 1.41911 1.46327 1.80563 2.05738 2.22999 2.32718 2.65111 2.94614 3.22982 3.59507 3.72887 3.87922 3.99783 4.02643 4.13999 4.20578 4.28874 4.32011 4.42898 4.47632 4.66537 4.69903 4.77623 4.83177 4.88368 4.92174 4.96734 5.01485 5.13649 5.18322 5.24246 5.33840 5.41877 5.48756 5.51629 5.52055 5.61616 5.67132 5.74930 5.89732 6.16200 6.18629 6.58229 6.81834 6.98633 7.18779 8.70348 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.002948 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.600766 B = 9494.211677 C =10151.440391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.272 3.728 10 N -0.340 5.340 11 C 0.071 3.929 12 C -0.281 4.281 13 C 0.242 3.758 14 N -0.495 5.495 15 C 0.689 3.311 16 O -0.558 6.558 17 N -0.693 5.693 18 C 0.158 3.842 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.104 4.104 24 C -0.122 4.122 25 C 0.527 3.473 26 O -0.464 6.464 27 N -0.310 5.310 28 H 0.274 0.726 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.218 0.782 32 H 0.174 0.826 33 H 0.452 0.548 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.327 -21.723 -4.745 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.154 3.846 10 N -0.123 5.123 11 C -0.078 4.078 12 C -0.312 4.312 13 C -0.011 4.011 14 N -0.238 5.238 15 C 0.389 3.611 16 O -0.430 6.430 17 N -0.363 5.363 18 C 0.069 3.931 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.142 4.142 24 C -0.160 4.160 25 C 0.315 3.685 26 O -0.332 6.332 27 N -0.138 5.138 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.234 0.766 32 H 0.191 0.809 33 H 0.302 0.698 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.580 -20.351 -5.300 28.062 hybrid contribution -0.040 0.815 0.188 0.837 sum 18.540 -19.536 -5.112 27.414 Atomic orbital electron populations 1.69968 1.06985 1.28908 1.49673 1.25677 0.95888 1.02527 0.93767 0.85468 0.78432 0.78157 0.78786 1.20660 1.19133 1.19149 1.21337 0.93139 0.91270 1.53223 0.93645 1.19422 0.85479 0.81181 0.98552 1.49172 1.23321 1.20454 1.19329 1.23279 0.99977 0.87905 0.96622 1.21325 1.02557 1.06848 1.00461 1.19299 0.91493 0.94989 0.95316 1.43281 1.27940 1.21839 1.30766 1.16114 0.81451 0.83734 0.79841 1.91094 1.68287 1.21556 1.62087 1.45918 1.32756 1.20717 1.36911 1.20560 0.94987 0.87924 0.89648 1.21753 1.00811 0.95875 0.96353 1.21297 0.97131 1.01575 0.95732 1.21934 0.94556 1.00686 0.98001 1.21427 1.01122 0.96219 0.97311 1.21226 0.96703 0.98405 0.97864 1.20751 0.90856 1.04906 0.99482 1.21743 0.83768 0.78456 0.84533 1.90729 1.65535 1.46230 1.30660 1.77714 1.03031 1.17172 1.15926 0.91680 0.91156 0.96081 0.76554 0.80859 0.69761 0.87134 0.92268 0.91818 0.90824 0.91233 0.91250 0.90698 0.91204 0.91253 0.89548 0.91638 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.20 13.29 21.45 0.28 -52.92 16 2 C 0.02 1.28 5.46 84.66 0.46 1.74 16 3 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -32.76 9.24 25.60 0.24 -32.52 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.27 14.57 6.26 85.64 0.54 15.11 16 10 N -0.34 -16.66 3.67 -351.86 -1.29 -17.95 16 11 C 0.07 2.71 11.44 83.52 0.96 3.66 16 12 C -0.28 -10.66 9.97 22.10 0.22 -10.44 16 13 C 0.24 10.61 7.66 133.24 1.02 11.63 16 14 N -0.50 -17.99 2.83 -599.27 -1.70 -19.68 16 15 C 0.69 24.39 8.58 179.50 1.54 25.93 16 16 O -0.56 -25.91 16.82 -3.81 -0.06 -25.98 16 17 N -0.69 -14.95 4.69 -446.61 -2.09 -17.05 16 18 C 0.16 2.85 0.80 1.32 0.00 2.85 16 19 C -0.11 -1.47 4.78 30.26 0.14 -1.33 16 20 C -0.12 -1.14 5.20 30.12 0.16 -0.99 16 21 C -0.11 -0.68 5.85 31.32 0.18 -0.50 16 22 C -0.12 -0.67 5.33 30.13 0.16 -0.51 16 23 C -0.10 -0.78 5.58 30.15 0.17 -0.61 16 24 C -0.12 -1.53 4.39 28.73 0.13 -1.40 16 25 C 0.53 14.73 6.69 88.06 0.59 15.31 16 26 O -0.46 -13.80 15.89 -2.92 -0.05 -13.85 16 27 N -0.31 -16.17 11.33 -54.33 -0.62 -16.78 16 28 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 29 H 0.07 3.55 8.07 -2.38 -0.02 3.53 16 30 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.22 6.08 8.06 -2.91 -0.02 6.06 16 32 H 0.17 5.72 6.68 -2.91 -0.02 5.70 16 33 H 0.45 7.12 6.37 -92.71 -0.59 6.53 16 34 H 0.11 1.10 7.03 -2.38 -0.02 1.09 16 35 H 0.06 1.01 7.90 -2.39 -0.02 0.99 16 36 H 0.06 0.63 4.60 -2.39 -0.01 0.62 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.07 0.37 6.65 -2.39 -0.02 0.35 16 42 H 0.07 0.51 5.83 -2.39 -0.01 0.50 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 1.12 7.45 -2.39 -0.02 1.10 16 Total: -1.00 -79.65 358.35 3.45 -76.20 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.45 Total: 12.28 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 6.50 Total: 27.93 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -5.41 Total: -124.38 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.65 3.45 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286252401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.903 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds