Wall clock time and date at job start Tue Mar 31 2020 16:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47089 * 59.99700 * 4 3 2 6 6 N 1.46498 * 109.47073 * 59.99987 * 5 4 3 7 7 S 1.65602 * 119.99612 * 144.72141 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 7 6 12 12 O 1.21279 * 119.99738 * 359.97438 * 11 10 7 13 13 N 1.34779 * 119.99975 * 179.97438 * 11 10 7 14 14 C 1.46498 * 120.00278 * 0.02562 * 13 11 10 15 15 C 1.46500 * 119.99865 * 179.97438 * 13 11 10 16 16 C 1.50705 * 109.47022 * 90.00302 * 15 13 11 17 17 H 1.08006 * 120.00040 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00427 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99534 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00389 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47477 * 59.99678 * 20 18 16 22 22 H 1.48499 * 109.47453 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46799 * 299.99966 * 20 18 16 24 24 C 1.52998 * 109.46913 * 300.00253 * 5 4 3 25 25 C 1.52996 * 109.47336 * 60.00343 * 24 5 4 26 26 H 1.09003 * 109.46839 * 60.00208 * 1 2 3 27 27 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47138 * 300.00460 * 1 2 3 29 29 H 1.09003 * 109.46839 * 119.99792 * 2 1 3 30 30 H 1.08996 * 109.47329 * 59.99657 * 3 2 1 31 31 H 1.09003 * 109.46933 * 299.99734 * 3 2 1 32 32 H 1.09003 * 109.46839 * 299.99792 * 4 3 2 33 33 H 1.08994 * 109.47488 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46856 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00384 * 325.00619 * 6 5 4 36 36 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 37 37 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 38 38 H 1.08997 * 109.47347 * 89.99695 * 14 13 11 39 39 H 1.09003 * 109.47309 * 210.00228 * 14 13 11 40 40 H 1.09001 * 109.46777 * 329.99698 * 14 13 11 41 41 H 1.08996 * 109.47248 * 209.99993 * 15 13 11 42 42 H 1.09002 * 109.47473 * 330.00748 * 15 13 11 43 43 H 0.97000 * 119.99473 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46713 * 179.97438 * 24 5 4 45 45 H 1.08999 * 109.47174 * 299.99288 * 24 5 4 46 46 H 1.09003 * 109.47419 * 179.97438 * 25 24 5 47 47 H 1.08994 * 109.47433 * 59.99562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 7 3.5927 1.4113 -2.4448 7 16 4.5456 1.4990 -3.7964 8 8 3.7733 2.2524 -4.7213 9 8 5.7917 1.9843 -3.3159 10 6 4.7035 -0.2208 -4.3512 11 6 5.5590 -0.2722 -5.5907 12 8 6.0167 0.7507 -6.0544 13 7 5.8154 -1.4550 -6.1840 14 6 5.2620 -2.6905 -5.6242 15 6 6.6467 -1.5049 -7.3893 16 6 8.0916 -1.6750 -6.9963 17 1 8.3636 -1.7390 -5.9530 18 6 9.0666 -1.7478 -7.9685 19 7 8.7354 -1.6692 -9.2389 20 14 10.8574 -1.9593 -7.4814 21 1 11.0169 -3.2230 -6.7181 22 1 11.7003 -2.0085 -8.7030 23 1 11.2789 -0.8137 -6.6357 24 6 3.5705 -0.7216 -1.2482 25 6 2.0405 -0.7215 -1.2489 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9329 0.9287 0.8909 33 1 3.9334 2.4700 0.0002 34 1 5.1706 0.7205 -1.2475 35 1 2.7133 1.8206 -2.4439 36 1 5.1675 -0.8154 -3.5642 37 1 3.7153 -0.6226 -4.5753 38 1 4.2864 -2.8859 -6.0690 39 1 5.9337 -3.5209 -5.8421 40 1 5.1544 -2.5840 -4.5447 41 1 6.3374 -2.3462 -8.0094 42 1 6.5295 -0.5776 -7.9502 43 1 9.4213 -1.7208 -9.9228 44 1 3.9338 -1.2354 -2.1382 45 1 3.9335 -1.2353 -0.3580 46 1 1.6771 -1.7492 -1.2493 47 1 1.6776 -0.2079 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330607166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:56 Heat of formation + Delta-G solvation = -126.066278 kcal Electronic energy + Delta-G solvation = -27953.150904 eV Core-core repulsion = 24069.411867 eV Total energy + Delta-G solvation = -3883.739037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.66490 -39.19638 -36.91957 -35.75908 -35.12620 -34.71352 -32.73981 -31.30442 -30.81150 -30.33861 -27.58444 -26.42307 -25.84490 -23.12694 -22.85811 -21.68648 -20.36984 -19.36599 -18.61133 -17.94072 -16.67802 -16.67331 -16.32599 -16.11404 -15.59619 -15.38299 -14.96702 -14.79012 -14.60408 -14.38880 -14.15834 -13.88759 -13.54420 -13.14389 -12.86474 -12.60445 -12.39046 -12.31006 -12.15878 -12.09242 -11.99269 -11.97212 -11.87040 -11.80359 -11.58214 -11.42828 -11.33017 -10.99008 -10.94794 -10.83174 -10.64306 -10.53548 -10.43097 -10.22298 -9.74038 -9.67555 -9.37749 -8.46714 -7.85864 -6.08341 -4.13864 0.27144 2.80154 3.02103 3.31053 3.36032 3.39731 3.56633 4.01689 4.21797 4.28939 4.34409 4.37290 4.41729 4.61726 4.73732 4.75589 4.86603 4.97208 5.06350 5.09503 5.15557 5.18946 5.26304 5.27167 5.30042 5.42789 5.48221 5.50646 5.66087 5.70397 5.71090 5.77144 5.77637 5.87340 5.96156 6.00067 6.06663 6.12466 6.83069 6.84561 7.31707 7.36923 7.85946 8.12874 8.15895 8.63973 8.90598 9.51265 11.00024 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003000 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.167150 B = 9329.538338 C = 9565.121506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.121 4.121 5 C 0.143 3.857 6 N -1.117 6.117 7 S 2.643 3.357 8 O -0.946 6.946 9 O -0.939 6.939 10 C -0.670 4.670 11 C 0.530 3.470 12 O -0.537 6.537 13 N -0.586 5.586 14 C 0.080 3.920 15 C 0.242 3.758 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.146 4.146 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.415 0.585 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.433 -0.913 21.117 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.154 4.154 4 C -0.160 4.160 5 C 0.036 3.964 6 N -0.877 5.877 7 S 2.732 3.268 8 O -0.936 6.936 9 O -0.929 6.929 10 C -0.799 4.799 11 C 0.314 3.686 12 O -0.416 6.416 13 N -0.317 5.317 14 C -0.065 4.065 15 C 0.123 3.877 16 C -0.571 4.571 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.185 4.185 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.546 0.267 20.259 26.159 hybrid contribution 0.389 -1.002 0.338 1.126 sum -16.158 -0.735 20.597 26.189 Atomic orbital electron populations 1.21841 0.95304 1.01690 1.01791 1.21157 0.95384 0.96061 0.98549 1.21606 0.95260 0.96465 1.02104 1.21750 0.96013 1.01405 0.96834 1.20880 0.99076 0.91211 0.85248 1.55973 1.33220 1.70779 1.27745 1.04178 0.74020 0.75879 0.72759 1.93578 1.70665 1.66615 1.62770 1.93584 1.43974 1.76134 1.79210 1.31195 1.09965 1.30318 1.08380 1.18925 0.81002 0.85211 0.83464 1.90824 1.52903 1.32934 1.64927 1.48059 1.49424 1.04744 1.29435 1.21732 0.98667 0.88278 0.97777 1.19452 0.88773 0.99049 0.80423 1.21365 0.91421 1.50991 0.93334 0.92323 1.24939 0.99386 0.94915 0.94778 1.69922 1.34029 1.49734 0.99510 0.86521 0.84072 0.78736 0.77914 1.20216 1.21091 1.19965 1.22210 0.96847 0.96395 1.03081 1.21563 0.94927 1.00554 0.98184 0.92621 0.92738 0.92801 0.91122 0.91680 0.91793 0.90523 0.90814 0.88636 0.74942 0.82923 0.82890 0.93257 0.90224 0.92314 0.94435 0.93343 0.92519 0.91331 0.90308 0.91748 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.09 -0.50 2.72 -90.62 -0.25 -0.75 16 3 C -0.12 -0.67 5.02 -26.73 -0.13 -0.80 16 4 C -0.12 -0.79 5.63 -26.73 -0.15 -0.94 16 5 C 0.14 1.13 3.02 -67.93 -0.21 0.93 16 6 N -1.12 -10.71 4.63 -4.89 -0.02 -10.73 16 7 S 2.64 40.24 4.58 -107.50 -0.49 39.75 16 8 O -0.95 -17.60 18.08 -57.55 -1.04 -18.64 16 9 O -0.94 -17.92 17.38 -57.55 -1.00 -18.92 16 10 C -0.67 -9.17 4.29 36.00 0.15 -9.01 16 11 C 0.53 11.13 7.69 -10.99 -0.08 11.05 16 12 O -0.54 -13.99 15.44 5.56 0.09 -13.91 16 13 N -0.59 -12.29 2.86 -182.95 -0.52 -12.81 16 14 C 0.08 1.17 10.24 59.85 0.61 1.78 16 15 C 0.24 6.32 5.16 -5.19 -0.03 6.30 16 16 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.15 -0.91 5.61 -26.73 -0.15 -1.06 16 25 C -0.11 -0.67 5.05 -26.73 -0.13 -0.80 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 6.51 -51.93 -0.34 0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.83 7.47 -51.93 -0.39 0.44 16 35 H 0.41 3.28 6.78 -34.47 -0.23 3.05 16 36 H 0.15 1.58 6.05 -51.92 -0.31 1.26 16 37 H 0.15 1.48 8.11 -51.92 -0.42 1.06 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 41 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.05 1.43 7.42 -51.93 -0.39 1.04 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 0.41 5.82 -51.93 -0.30 0.10 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.40 7.44 -51.93 -0.39 0.02 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -38.52 381.30 -9.69 -48.20 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.71 Total: -2.25 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.44 Total: -7.50 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.19 Total: -49.42 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.95 Total: -51.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 40.24 SS G_CDS: -0.49 Total: 39.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.52 -9.69 -48.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330607166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.862 kcal (2) G-P(sol) polarization free energy of solvation -38.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds