Wall clock time and date at job start Tue Mar 31 2020 16:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47089 * 59.99700 * 4 3 2 6 6 N 1.46498 * 109.47073 * 59.99987 * 5 4 3 7 7 S 1.65602 * 119.99612 * 144.72141 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 7 6 12 12 O 1.21279 * 119.99738 * 359.97438 * 11 10 7 13 13 N 1.34779 * 119.99975 * 179.97438 * 11 10 7 14 14 C 1.46498 * 120.00278 * 0.02562 * 13 11 10 15 15 C 1.46500 * 119.99865 * 179.97438 * 13 11 10 16 16 C 1.50705 * 109.47022 * 90.00302 * 15 13 11 17 17 H 1.08006 * 120.00040 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00427 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99534 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00389 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47477 * 59.99678 * 20 18 16 22 22 H 1.48499 * 109.47453 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46799 * 299.99966 * 20 18 16 24 24 C 1.52998 * 109.46913 * 300.00253 * 5 4 3 25 25 C 1.52996 * 109.47336 * 60.00343 * 24 5 4 26 26 H 1.09003 * 109.46839 * 60.00208 * 1 2 3 27 27 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47138 * 300.00460 * 1 2 3 29 29 H 1.09003 * 109.46839 * 119.99792 * 2 1 3 30 30 H 1.08996 * 109.47329 * 59.99657 * 3 2 1 31 31 H 1.09003 * 109.46933 * 299.99734 * 3 2 1 32 32 H 1.09003 * 109.46839 * 299.99792 * 4 3 2 33 33 H 1.08994 * 109.47488 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46856 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00384 * 325.00619 * 6 5 4 36 36 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 37 37 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 38 38 H 1.08997 * 109.47347 * 89.99695 * 14 13 11 39 39 H 1.09003 * 109.47309 * 210.00228 * 14 13 11 40 40 H 1.09001 * 109.46777 * 329.99698 * 14 13 11 41 41 H 1.08996 * 109.47248 * 209.99993 * 15 13 11 42 42 H 1.09002 * 109.47473 * 330.00748 * 15 13 11 43 43 H 0.97000 * 119.99473 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46713 * 179.97438 * 24 5 4 45 45 H 1.08999 * 109.47174 * 299.99288 * 24 5 4 46 46 H 1.09003 * 109.47419 * 179.97438 * 25 24 5 47 47 H 1.08994 * 109.47433 * 59.99562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 7 3.5927 1.4113 -2.4448 7 16 4.5456 1.4990 -3.7964 8 8 3.7733 2.2524 -4.7213 9 8 5.7917 1.9843 -3.3159 10 6 4.7035 -0.2208 -4.3512 11 6 5.5590 -0.2722 -5.5907 12 8 6.0167 0.7507 -6.0544 13 7 5.8154 -1.4550 -6.1840 14 6 5.2620 -2.6905 -5.6242 15 6 6.6467 -1.5049 -7.3893 16 6 8.0916 -1.6750 -6.9963 17 1 8.3636 -1.7390 -5.9530 18 6 9.0666 -1.7478 -7.9685 19 7 8.7354 -1.6692 -9.2389 20 14 10.8574 -1.9593 -7.4814 21 1 11.0169 -3.2230 -6.7181 22 1 11.7003 -2.0085 -8.7030 23 1 11.2789 -0.8137 -6.6357 24 6 3.5705 -0.7216 -1.2482 25 6 2.0405 -0.7215 -1.2489 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9329 0.9287 0.8909 33 1 3.9334 2.4700 0.0002 34 1 5.1706 0.7205 -1.2475 35 1 2.7133 1.8206 -2.4439 36 1 5.1675 -0.8154 -3.5642 37 1 3.7153 -0.6226 -4.5753 38 1 4.2864 -2.8859 -6.0690 39 1 5.9337 -3.5209 -5.8421 40 1 5.1544 -2.5840 -4.5447 41 1 6.3374 -2.3462 -8.0094 42 1 6.5295 -0.5776 -7.9502 43 1 9.4213 -1.7208 -9.9228 44 1 3.9338 -1.2354 -2.1382 45 1 3.9335 -1.2353 -0.3580 46 1 1.6771 -1.7492 -1.2493 47 1 1.6776 -0.2079 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330607166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:54 Heat of formation + Delta-G solvation = -155.788443 kcal Electronic energy + Delta-G solvation = -27954.439754 eV Core-core repulsion = 24069.411867 eV Total energy + Delta-G solvation = -3885.027887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86436 -40.18732 -38.24124 -37.10100 -36.83059 -35.35819 -34.81939 -32.12108 -31.46795 -31.41847 -29.35178 -27.37284 -26.89530 -24.96173 -23.47699 -22.19373 -21.32473 -20.48336 -19.76270 -19.10365 -18.74467 -17.90394 -17.72080 -17.31486 -16.88695 -16.68489 -16.08697 -15.93513 -15.81261 -15.17406 -14.90771 -14.61620 -14.54980 -14.35698 -14.12736 -13.91455 -13.64795 -13.51913 -13.27336 -13.21533 -13.20779 -13.08518 -12.91918 -12.83461 -12.78646 -12.60925 -12.41771 -12.24556 -12.15605 -12.03143 -11.97898 -11.77173 -11.30066 -11.16961 -11.10818 -10.87603 -10.66660 -10.31649 -9.59942 -8.26124 -6.40997 -0.91886 1.35146 1.40878 1.44981 1.49958 1.72636 2.12722 2.37958 2.80183 3.04460 3.14148 3.30930 3.75988 3.83470 3.87843 3.94194 4.10290 4.22569 4.28827 4.39411 4.41654 4.60348 4.65744 4.69493 4.70066 4.77109 4.87496 4.88660 4.95640 5.00310 5.08544 5.16733 5.23242 5.24923 5.27641 5.35301 5.44506 5.46229 5.51054 5.56307 5.71500 5.72431 5.99405 6.11780 6.45673 6.67629 7.06119 7.30509 8.81502 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003000 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.167150 B = 9329.538338 C = 9565.121506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.120 4.120 5 C 0.133 3.867 6 N -1.094 6.094 7 S 2.647 3.353 8 O -0.991 6.991 9 O -0.988 6.988 10 C -0.650 4.650 11 C 0.513 3.487 12 O -0.603 6.603 13 N -0.592 5.592 14 C 0.067 3.933 15 C 0.252 3.748 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.967 3.033 21 H -0.255 1.255 22 H -0.278 1.278 23 H -0.280 1.280 24 C -0.146 4.146 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.425 0.575 36 H 0.196 0.804 37 H 0.203 0.797 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.000 1.000 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 -3.276 23.902 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.155 4.155 4 C -0.159 4.159 5 C 0.026 3.974 6 N -0.859 5.859 7 S 2.738 3.262 8 O -0.981 6.981 9 O -0.977 6.977 10 C -0.779 4.779 11 C 0.300 3.700 12 O -0.487 6.487 13 N -0.321 5.321 14 C -0.074 4.074 15 C 0.131 3.869 16 C -0.587 4.587 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.180 1.180 22 H -0.203 1.203 23 H -0.205 1.205 24 C -0.185 4.185 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.263 0.737 36 H 0.213 0.787 37 H 0.220 0.780 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.538 -2.121 23.082 29.066 hybrid contribution 0.596 -0.292 -0.474 0.816 sum -16.942 -2.413 22.608 28.354 Atomic orbital electron populations 1.21838 0.95267 1.01852 1.01677 1.21141 0.95374 0.95574 0.98804 1.21619 0.94624 0.97041 1.02198 1.21765 0.96571 1.00858 0.96714 1.21191 0.98926 0.92674 0.84591 1.55471 1.32925 1.71023 1.26456 1.03604 0.73219 0.76385 0.72988 1.93514 1.71209 1.68595 1.64744 1.93526 1.46477 1.77712 1.80027 1.31071 1.11394 1.29877 1.05586 1.19967 0.80989 0.84087 0.84954 1.90795 1.55550 1.35155 1.67155 1.48064 1.48700 1.07208 1.28115 1.22166 0.99490 0.85116 1.00633 1.18932 0.89219 0.96268 0.82473 1.21686 0.92806 1.50908 0.93338 0.92443 1.25880 1.04118 0.94453 0.94724 1.70042 1.35570 1.50493 1.00586 0.85471 0.78381 0.79159 0.77867 1.17952 1.20283 1.20542 1.22249 0.97115 0.94743 1.04390 1.21604 0.94608 1.01135 0.98126 0.93051 0.92427 0.92673 0.90479 0.91148 0.92253 0.88839 0.91924 0.89400 0.73666 0.78707 0.77954 0.90205 0.90908 0.87689 0.94732 0.98200 0.92281 0.90405 0.88648 0.90773 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 71.98 0.66 -0.50 16 2 C -0.09 -0.69 2.72 -10.79 -0.03 -0.72 16 3 C -0.12 -1.07 5.02 30.59 0.15 -0.91 16 4 C -0.12 -1.29 5.63 30.60 0.17 -1.12 16 5 C 0.13 1.75 3.02 44.99 0.14 1.89 16 6 N -1.09 -19.09 4.63 -169.38 -0.78 -19.88 16 7 S 2.65 79.48 4.58 -56.49 -0.26 79.22 16 8 O -0.99 -37.67 18.08 -127.64 -2.31 -39.98 16 9 O -0.99 -38.53 17.38 -127.64 -2.22 -40.74 16 10 C -0.65 -15.93 4.29 71.24 0.31 -15.63 16 11 C 0.51 21.37 7.69 87.66 0.67 22.05 16 12 O -0.60 -32.81 15.44 -3.03 -0.05 -32.85 16 13 N -0.59 -24.39 2.86 -851.13 -2.43 -26.82 16 14 C 0.07 1.75 10.24 127.77 1.31 3.06 16 15 C 0.25 13.62 5.16 85.63 0.44 14.06 16 16 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 17 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 20 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 C -0.15 -1.20 5.61 30.59 0.17 -1.02 16 25 C -0.12 -0.90 5.05 30.59 0.15 -0.75 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.59 6.51 -2.39 -0.02 0.57 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.34 7.47 -2.39 -0.02 1.32 16 35 H 0.42 6.05 6.78 -96.74 -0.66 5.40 16 36 H 0.20 3.08 6.05 -2.39 -0.01 3.06 16 37 H 0.20 2.92 8.11 -2.39 -0.02 2.90 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 40 H 0.10 1.74 6.44 -2.39 -0.02 1.72 16 41 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 42 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.08 0.49 5.82 -2.39 -0.01 0.47 16 45 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 0.54 7.44 -2.39 -0.02 0.52 16 Total: -1.00 -90.46 381.30 -0.58 -91.04 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.31 Total: 9.27 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.85 Total: -10.22 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.93 Total: -102.95 kcal Atomic # 8 Polarization: -109.00 SS G_CDS: -4.57 Total: -113.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 79.48 SS G_CDS: -0.26 Total: 79.22 kcal Total: -90.46 -0.58 -91.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330607166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.752 kcal (2) G-P(sol) polarization free energy of solvation -90.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds