Wall clock time and date at job start Tue Mar 31 2020 16:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47604 * 300.00251 * 3 2 1 6 6 H 1.48504 * 109.46987 * 60.00477 * 3 2 1 7 7 C 1.37873 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46731 * 180.02562 * 9 7 2 11 11 C 1.34993 * 125.96709 * 125.02821 * 10 9 7 12 12 C 1.35220 * 107.87218 * 179.97438 * 11 10 9 13 13 C 1.40452 * 107.86988 * 0.02562 * 12 11 10 14 14 N 1.39933 * 125.98297 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99692 * 0.02562 * 14 13 12 16 16 O 1.21384 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.49344 * 119.99631 * 179.97438 * 15 14 13 18 18 O 1.21352 * 120.00403 * 359.97438 * 17 15 14 19 19 N 1.34780 * 119.99631 * 179.97438 * 17 15 14 20 20 C 1.46499 * 119.99728 * 180.02562 * 19 17 15 21 21 C 1.53008 * 109.46671 * 180.02562 * 20 19 17 22 22 C 1.53001 * 115.54683 * 179.91252 * 21 20 19 23 23 C 1.53001 * 117.49940 * 34.32627 * 22 21 20 24 24 C 1.53010 * 117.49885 * 325.66558 * 22 21 20 25 25 C 1.52991 * 117.50192 * 34.20152 * 21 20 19 26 26 C 1.52991 * 60.00260 * 252.51021 * 25 21 20 27 27 N 1.31274 * 108.03871 * 359.97438 * 13 12 11 28 28 H 0.96999 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47218 * 59.99943 * 9 7 2 30 30 H 1.08998 * 109.46727 * 299.99661 * 9 7 2 31 31 H 1.07999 * 126.06524 * 0.02562 * 11 10 9 32 32 H 1.07998 * 126.06391 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00322 * 180.02562 * 14 13 12 34 34 H 0.97004 * 119.99752 * 359.97438 * 19 17 15 35 35 H 1.09000 * 109.46664 * 299.99205 * 20 19 17 36 36 H 1.08997 * 109.47345 * 59.99829 * 20 19 17 37 37 H 1.08995 * 115.55256 * 180.02562 * 22 21 20 38 38 H 1.08997 * 117.50023 * 359.97438 * 23 22 21 39 39 H 1.08998 * 117.49888 * 145.02615 * 23 22 21 40 40 H 1.08996 * 117.49892 * 214.98475 * 24 22 21 41 41 H 1.09002 * 117.49590 * 359.97438 * 24 22 21 42 42 H 1.08998 * 117.50173 * 359.97438 * 25 21 20 43 43 H 1.09003 * 117.50160 * 145.02109 * 25 21 20 44 44 H 1.09006 * 117.50255 * 252.51246 * 26 25 21 45 45 H 1.09001 * 117.49903 * 107.48517 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2417 -4.6227 0.8941 12 6 3.2598 -5.4433 0.5499 13 6 3.8691 -4.9150 -0.6001 14 7 4.9635 -5.4648 -1.2769 15 6 5.5274 -6.6053 -0.8320 16 8 5.0860 -7.1552 0.1560 17 6 6.6950 -7.1923 -1.5547 18 8 7.1359 -6.6428 -2.5428 19 7 7.2592 -8.3325 -1.1095 20 6 8.4049 -8.9081 -1.8181 21 6 8.8492 -10.1908 -1.1121 22 6 10.0429 -10.9112 -1.7422 23 6 11.1285 -10.0479 -2.3881 24 6 10.1741 -10.8617 -3.2658 25 6 7.7638 -11.0535 -0.4654 26 6 8.7180 -10.2403 0.4114 27 7 3.2322 -3.8153 -0.9289 28 1 -0.4850 0.8400 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 1.5768 -4.7529 1.7352 32 1 3.5531 -6.3444 1.0679 33 1 5.3164 -5.0251 -2.0662 34 1 6.9069 -8.7716 -0.3195 35 1 8.1188 -9.1391 -2.8442 36 1 9.2266 -8.1920 -1.8224 37 1 10.3592 -11.8252 -1.2395 38 1 10.9921 -8.9668 -2.3646 39 1 12.1592 -10.3940 -2.3105 40 1 10.5773 -11.7427 -3.7651 41 1 9.4097 -10.3162 -3.8193 42 1 6.7332 -10.7072 -0.5425 43 1 7.8998 -12.1348 -0.4888 44 1 9.4820 -10.7865 0.9649 45 1 8.3152 -9.3592 0.9108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337536891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:54 Heat of formation + Delta-G solvation = 72.254582 kcal Electronic energy + Delta-G solvation = -27093.143327 eV Core-core repulsion = 23114.852928 eV Total energy + Delta-G solvation = -3978.290400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20204 -40.46121 -39.56385 -38.36142 -36.20245 -35.13789 -33.96135 -33.35134 -31.06110 -29.43430 -28.45404 -26.89261 -25.08287 -23.67963 -23.18510 -22.76339 -22.46557 -21.32634 -20.52382 -19.92881 -19.27843 -18.20708 -17.17135 -16.63622 -16.59837 -16.38857 -16.21903 -15.66163 -15.21915 -15.09750 -14.90944 -14.46754 -14.24767 -13.97699 -13.70206 -13.49358 -13.41256 -12.96915 -12.43390 -12.31867 -12.10706 -11.92043 -11.90326 -11.68235 -11.58938 -11.57642 -11.23864 -11.08307 -10.87621 -10.56182 -10.49799 -10.29009 -10.05924 -9.97799 -9.62182 -9.53717 -9.44438 -8.66328 -8.25017 -7.60177 -6.27047 -4.32141 1.15383 1.99646 2.63575 2.96191 3.00220 3.14631 3.21624 3.29393 3.36481 3.63849 3.67393 3.81086 3.93442 4.11701 4.28686 4.35202 4.37658 4.38623 4.55958 4.65175 4.82760 5.08459 5.13766 5.21978 5.27047 5.34222 5.39055 5.40790 5.44160 5.54663 5.65715 5.69214 5.70523 5.72193 5.87495 6.07872 6.28688 6.38933 6.77041 6.82709 7.00584 7.21790 7.31902 7.56957 7.67687 7.83075 7.91841 7.96018 8.52253 8.76791 9.33898 10.81820 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.001932 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.837256 B =14486.848095 C =15117.323637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.314 5.314 11 C 0.054 3.946 12 C -0.286 4.286 13 C 0.250 3.750 14 N -0.597 5.597 15 C 0.513 3.487 16 O -0.500 6.500 17 C 0.516 3.484 18 O -0.513 6.513 19 N -0.702 5.702 20 C 0.153 3.847 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.178 4.178 24 C -0.178 4.178 25 C -0.171 4.171 26 C -0.171 4.171 27 N -0.294 5.294 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.423 0.577 34 H 0.414 0.586 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.840 -23.676 -1.298 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.317 4.317 13 C -0.003 4.003 14 N -0.245 5.245 15 C 0.292 3.708 16 O -0.373 6.373 17 C 0.296 3.704 18 O -0.388 6.388 19 N -0.358 5.358 20 C 0.030 3.970 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.215 4.215 24 C -0.215 4.215 25 C -0.208 4.208 26 C -0.208 4.208 27 N -0.125 5.125 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.188 0.812 32 H 0.178 0.822 33 H 0.261 0.739 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.532 -22.484 -2.140 28.592 hybrid contribution 0.396 0.315 0.558 0.753 sum 17.928 -22.169 -1.582 28.555 Atomic orbital electron populations 1.69921 1.06043 1.27588 1.49726 1.24945 0.94998 0.99598 0.94536 0.86265 0.80086 0.82392 0.77734 1.19529 1.20656 1.20753 1.21289 0.94060 0.89308 1.52117 0.91188 1.19812 0.85571 0.81245 0.99454 1.49173 1.22913 1.19628 1.17876 1.22587 1.00223 0.90068 0.96779 1.21509 1.02140 1.06453 1.01572 1.19007 0.91475 0.94812 0.94995 1.41983 1.28781 1.23594 1.30182 1.19874 0.84309 0.81453 0.85126 1.90708 1.61892 1.59943 1.24786 1.19884 0.84004 0.81720 0.84769 1.90797 1.62607 1.60238 1.25156 1.45806 1.32903 1.24934 1.32170 1.20900 0.87747 0.92713 0.95642 1.21018 0.98122 0.96954 0.95084 1.21544 0.96030 1.00382 0.95126 1.23046 0.95594 0.98780 1.04093 1.23047 1.02899 1.02913 0.92674 1.23134 0.95637 0.98798 1.03200 1.23138 1.02849 1.02867 0.91931 1.77409 1.03324 1.15811 1.15968 0.92338 0.93521 0.92351 0.81213 0.82162 0.73919 0.74761 0.90095 0.90088 0.87187 0.88365 0.88575 0.88584 0.88373 0.88202 0.88033 0.88029 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.61 9.24 -34.44 -0.32 -14.93 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.26 6.41 6.26 -5.19 -0.03 6.38 16 10 N -0.31 -7.15 3.67 -62.56 -0.23 -7.38 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.40 9.60 -39.82 -0.38 -5.78 16 13 C 0.25 4.96 8.10 -154.55 -1.25 3.71 16 14 N -0.60 -9.73 5.43 -11.58 -0.06 -9.80 16 15 C 0.51 7.45 7.85 -11.63 -0.09 7.36 16 16 O -0.50 -7.77 13.60 5.47 0.07 -7.69 16 17 C 0.52 6.40 7.89 -11.63 -0.09 6.31 16 18 O -0.51 -7.34 16.47 5.49 0.09 -7.25 16 19 N -0.70 -6.56 4.99 -60.76 -0.30 -6.86 16 20 C 0.15 1.20 4.84 -4.04 -0.02 1.18 16 21 C -0.11 -0.69 2.51 -154.51 -0.39 -1.07 16 22 C -0.11 -0.61 5.85 -90.61 -0.53 -1.14 16 23 C -0.18 -0.97 9.92 -26.69 -0.26 -1.23 16 24 C -0.18 -0.96 9.92 -26.68 -0.26 -1.22 16 25 C -0.17 -0.98 9.47 -26.74 -0.25 -1.23 16 26 C -0.17 -0.99 9.47 -26.74 -0.25 -1.24 16 27 N -0.29 -6.73 12.42 31.41 0.39 -6.34 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 32 H 0.16 2.83 5.91 -52.49 -0.31 2.52 16 33 H 0.42 6.34 8.29 -40.82 -0.34 6.00 16 34 H 0.41 3.48 5.05 -40.82 -0.21 3.27 16 35 H 0.08 0.66 6.90 -51.93 -0.36 0.30 16 36 H 0.08 0.66 6.91 -51.93 -0.36 0.30 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.58 6.75 -51.93 -0.35 0.23 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.57 6.75 -51.93 -0.35 0.22 16 42 H 0.10 0.61 7.00 -51.93 -0.36 0.25 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.63 7.02 -51.93 -0.36 0.26 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -31.44 380.22 -8.95 -40.39 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.92 Total: 7.76 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -4.44 Total: -0.49 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.53 Total: -54.76 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.16 Total: -14.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.44 -8.95 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337536891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.645 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds