Wall clock time and date at job start Tue Mar 31 2020 16:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47604 * 300.00251 * 3 2 1 6 6 H 1.48504 * 109.46987 * 60.00477 * 3 2 1 7 7 C 1.37873 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46731 * 180.02562 * 9 7 2 11 11 C 1.34993 * 125.96709 * 125.02821 * 10 9 7 12 12 C 1.35220 * 107.87218 * 179.97438 * 11 10 9 13 13 C 1.40452 * 107.86988 * 0.02562 * 12 11 10 14 14 N 1.39933 * 125.98297 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99692 * 0.02562 * 14 13 12 16 16 O 1.21384 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.49344 * 119.99631 * 179.97438 * 15 14 13 18 18 O 1.21352 * 120.00403 * 359.97438 * 17 15 14 19 19 N 1.34780 * 119.99631 * 179.97438 * 17 15 14 20 20 C 1.46499 * 119.99728 * 180.02562 * 19 17 15 21 21 C 1.53008 * 109.46671 * 180.02562 * 20 19 17 22 22 C 1.53001 * 115.54683 * 179.91252 * 21 20 19 23 23 C 1.53001 * 117.49940 * 34.32627 * 22 21 20 24 24 C 1.53010 * 117.49885 * 325.66558 * 22 21 20 25 25 C 1.52991 * 117.50192 * 34.20152 * 21 20 19 26 26 C 1.52991 * 60.00260 * 252.51021 * 25 21 20 27 27 N 1.31274 * 108.03871 * 359.97438 * 13 12 11 28 28 H 0.96999 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47218 * 59.99943 * 9 7 2 30 30 H 1.08998 * 109.46727 * 299.99661 * 9 7 2 31 31 H 1.07999 * 126.06524 * 0.02562 * 11 10 9 32 32 H 1.07998 * 126.06391 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00322 * 180.02562 * 14 13 12 34 34 H 0.97004 * 119.99752 * 359.97438 * 19 17 15 35 35 H 1.09000 * 109.46664 * 299.99205 * 20 19 17 36 36 H 1.08997 * 109.47345 * 59.99829 * 20 19 17 37 37 H 1.08995 * 115.55256 * 180.02562 * 22 21 20 38 38 H 1.08997 * 117.50023 * 359.97438 * 23 22 21 39 39 H 1.08998 * 117.49888 * 145.02615 * 23 22 21 40 40 H 1.08996 * 117.49892 * 214.98475 * 24 22 21 41 41 H 1.09002 * 117.49590 * 359.97438 * 24 22 21 42 42 H 1.08998 * 117.50173 * 359.97438 * 25 21 20 43 43 H 1.09003 * 117.50160 * 145.02109 * 25 21 20 44 44 H 1.09006 * 117.50255 * 252.51246 * 26 25 21 45 45 H 1.09001 * 117.49903 * 107.48517 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2417 -4.6227 0.8941 12 6 3.2598 -5.4433 0.5499 13 6 3.8691 -4.9150 -0.6001 14 7 4.9635 -5.4648 -1.2769 15 6 5.5274 -6.6053 -0.8320 16 8 5.0860 -7.1552 0.1560 17 6 6.6950 -7.1923 -1.5547 18 8 7.1359 -6.6428 -2.5428 19 7 7.2592 -8.3325 -1.1095 20 6 8.4049 -8.9081 -1.8181 21 6 8.8492 -10.1908 -1.1121 22 6 10.0429 -10.9112 -1.7422 23 6 11.1285 -10.0479 -2.3881 24 6 10.1741 -10.8617 -3.2658 25 6 7.7638 -11.0535 -0.4654 26 6 8.7180 -10.2403 0.4114 27 7 3.2322 -3.8153 -0.9289 28 1 -0.4850 0.8400 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 1.5768 -4.7529 1.7352 32 1 3.5531 -6.3444 1.0679 33 1 5.3164 -5.0251 -2.0662 34 1 6.9069 -8.7716 -0.3195 35 1 8.1188 -9.1391 -2.8442 36 1 9.2266 -8.1920 -1.8224 37 1 10.3592 -11.8252 -1.2395 38 1 10.9921 -8.9668 -2.3646 39 1 12.1592 -10.3940 -2.3105 40 1 10.5773 -11.7427 -3.7651 41 1 9.4097 -10.3162 -3.8193 42 1 6.7332 -10.7072 -0.5425 43 1 7.8998 -12.1348 -0.4888 44 1 9.4820 -10.7865 0.9649 45 1 8.3152 -9.3592 0.9108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337536891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:53 Heat of formation + Delta-G solvation = 53.205667 kcal Electronic energy + Delta-G solvation = -27093.969350 eV Core-core repulsion = 23114.852928 eV Total energy + Delta-G solvation = -3979.116423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49129 -41.67823 -40.40427 -39.40738 -36.88542 -36.35705 -35.37759 -34.72106 -32.84694 -31.02976 -29.37895 -28.57610 -26.27320 -24.79218 -24.03919 -23.61363 -22.88393 -22.62810 -21.86389 -21.19706 -20.22646 -19.11804 -18.70952 -18.25323 -17.92437 -17.31839 -17.16714 -16.97430 -16.30484 -16.15041 -16.00482 -15.84694 -15.44734 -15.22235 -14.60684 -14.45743 -14.21732 -14.17606 -14.08506 -13.88167 -13.71810 -13.03865 -12.83017 -12.65239 -12.56450 -12.33378 -12.32188 -12.16155 -12.13348 -12.05254 -11.68323 -11.65592 -11.43513 -10.93784 -10.85238 -10.73107 -10.62268 -10.09195 -9.84575 -9.22953 -8.34601 -6.47924 -0.00157 0.81554 1.12536 1.36403 1.38632 1.51052 1.71344 1.81150 2.23006 2.33332 2.52241 2.55400 2.97830 3.18613 3.23990 3.46848 3.59570 3.87675 3.90337 3.93191 4.12771 4.18129 4.21455 4.40011 4.60103 4.61675 4.63666 4.78564 4.82986 4.87440 4.88841 4.91272 4.93363 4.96531 5.02517 5.08113 5.19056 5.22311 5.29736 5.29779 5.55601 5.71856 5.77017 5.82077 6.09356 6.24537 6.49858 6.63515 6.71687 6.95439 7.22105 8.73474 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.001932 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.837256 B =14486.848095 C =15117.323637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.270 3.730 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.287 4.287 13 C 0.257 3.743 14 N -0.600 5.600 15 C 0.517 3.483 16 O -0.506 6.506 17 C 0.524 3.476 18 O -0.533 6.533 19 N -0.683 5.683 20 C 0.151 3.849 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.182 4.182 24 C -0.182 4.182 25 C -0.169 4.169 26 C -0.170 4.170 27 N -0.341 5.341 28 H 0.273 0.727 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.208 0.792 32 H 0.177 0.823 33 H 0.428 0.572 34 H 0.420 0.580 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.130 -25.035 -0.486 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.318 4.318 13 C 0.003 3.997 14 N -0.249 5.249 15 C 0.298 3.702 16 O -0.379 6.379 17 C 0.303 3.697 18 O -0.410 6.410 19 N -0.339 5.339 20 C 0.029 3.971 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.219 4.219 24 C -0.219 4.219 25 C -0.205 4.205 26 C -0.207 4.207 27 N -0.172 5.172 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.194 0.806 33 H 0.266 0.734 34 H 0.260 0.740 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.841 -23.897 -1.311 30.459 hybrid contribution 0.060 0.583 0.316 0.666 sum 18.901 -23.313 -0.995 30.029 Atomic orbital electron populations 1.69988 1.07113 1.28710 1.49951 1.25709 0.95848 1.02648 0.93922 0.85317 0.78363 0.78518 0.78317 1.20076 1.19940 1.19389 1.21425 0.93366 0.91023 1.52782 0.93037 1.19403 0.85617 0.81369 0.98422 1.48913 1.23475 1.20344 1.19380 1.23260 1.00372 0.88488 0.96647 1.21753 1.01930 1.06831 1.01284 1.19322 0.91486 0.93855 0.95001 1.42096 1.28202 1.24215 1.30394 1.20277 0.84409 0.80617 0.84868 1.90686 1.62185 1.59942 1.25116 1.19446 0.83439 0.82377 0.84413 1.90801 1.63103 1.61076 1.26033 1.45788 1.32570 1.23572 1.31931 1.21020 0.86867 0.93513 0.95720 1.20973 0.98799 0.96307 0.95365 1.21587 0.95542 1.00624 0.95096 1.23086 0.96185 0.98415 1.04229 1.23088 1.02778 1.03221 0.92767 1.23188 0.95199 0.99456 1.02698 1.23190 1.03105 1.02790 0.91580 1.77322 1.04641 1.17839 1.17435 0.91819 0.95887 0.91847 0.77567 0.80592 0.73373 0.73997 0.90181 0.90268 0.85980 0.89139 0.87648 0.87630 0.89098 0.88690 0.86860 0.86896 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.75 13.29 21.45 0.28 -51.47 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.82 9.24 25.60 0.24 -30.58 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.27 13.83 6.26 85.64 0.54 14.37 16 10 N -0.34 -15.62 3.67 -351.84 -1.29 -16.91 16 11 C 0.06 2.27 11.43 83.51 0.95 3.23 16 12 C -0.29 -10.53 9.60 22.11 0.21 -10.32 16 13 C 0.26 10.20 8.10 133.40 1.08 11.28 16 14 N -0.60 -19.41 5.43 -308.89 -1.68 -21.08 16 15 C 0.52 14.55 7.85 87.24 0.69 15.24 16 16 O -0.51 -14.95 13.60 -3.35 -0.05 -14.99 16 17 C 0.52 12.50 7.89 87.24 0.69 13.19 16 18 O -0.53 -14.96 16.47 -3.25 -0.05 -15.01 16 19 N -0.68 -11.89 4.99 -464.52 -2.32 -14.20 16 20 C 0.15 2.19 4.84 86.38 0.42 2.61 16 21 C -0.11 -1.21 2.51 -52.18 -0.13 -1.34 16 22 C -0.11 -0.99 5.85 -10.79 -0.06 -1.05 16 23 C -0.18 -1.72 9.92 30.62 0.30 -1.42 16 24 C -0.18 -1.70 9.92 30.62 0.30 -1.39 16 25 C -0.17 -1.58 9.47 30.59 0.29 -1.29 16 26 C -0.17 -1.62 9.47 30.59 0.29 -1.33 16 27 N -0.34 -15.93 12.42 -54.54 -0.68 -16.61 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 31 H 0.21 5.86 8.06 -2.91 -0.02 5.84 16 32 H 0.18 5.87 5.91 -2.91 -0.02 5.85 16 33 H 0.43 12.93 8.29 -92.71 -0.77 12.16 16 34 H 0.42 6.39 5.05 -92.71 -0.47 5.92 16 35 H 0.08 1.22 6.90 -2.39 -0.02 1.21 16 36 H 0.08 1.22 6.91 -2.39 -0.02 1.21 16 37 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.99 6.75 -2.39 -0.02 0.97 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.98 6.75 -2.39 -0.02 0.96 16 42 H 0.09 0.99 7.00 -2.39 -0.02 0.98 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 1.01 7.02 -2.39 -0.02 1.00 16 Total: -1.00 -67.07 380.22 2.33 -64.73 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.18 Total: 27.02 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.27 Total: 12.72 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -5.68 Total: -120.27 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.10 Total: -30.00 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.07 2.33 -64.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337536891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.940 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds