Wall clock time and date at job start Tue Mar 31 2020 16:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47260 * 2 1 4 4 C 1.52998 * 109.46894 * 120.00396 * 2 1 3 5 5 C 1.52996 * 109.47222 * 59.99968 * 4 2 1 6 6 C 1.53005 * 109.47309 * 59.99660 * 5 4 2 7 7 N 1.46500 * 109.46964 * 60.00087 * 6 5 4 8 8 S 1.65600 * 120.00251 * 52.87810 * 7 6 5 9 9 O 1.42096 * 104.27786 * 176.61085 * 8 7 6 10 10 O 1.42102 * 104.27931 * 304.47146 * 8 7 6 11 11 C 1.81401 * 104.45073 * 60.54147 * 8 7 6 12 12 C 1.53000 * 109.47407 * 174.36480 * 11 8 7 13 13 C 1.50701 * 109.47079 * 179.97438 * 12 11 8 14 14 H 1.08004 * 120.00118 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99846 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99941 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99860 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47162 * 60.00366 * 17 15 13 19 19 H 1.48511 * 109.47034 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47274 * 299.99909 * 17 15 13 21 21 C 1.50696 * 109.47007 * 179.97438 * 6 5 4 22 22 N 1.34775 * 120.00276 * 201.67690 * 21 6 5 23 23 O 1.21284 * 119.99951 * 21.68132 * 21 6 5 24 24 C 1.52996 * 109.47142 * 299.99776 * 6 5 4 25 25 C 1.53002 * 109.46498 * 240.00332 * 2 1 3 26 26 H 1.09005 * 109.46929 * 299.99374 * 1 2 3 27 27 H 1.09000 * 109.47715 * 59.99867 * 1 2 3 28 28 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47401 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47240 * 300.00581 * 3 2 1 31 31 H 1.09005 * 109.47141 * 60.00286 * 3 2 1 32 32 H 1.08992 * 109.47343 * 299.99251 * 4 2 1 33 33 H 1.09004 * 109.46592 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46971 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.47353 * 299.99447 * 5 4 2 36 36 H 0.97004 * 120.00031 * 232.88053 * 7 6 5 37 37 H 1.09000 * 109.47192 * 294.36976 * 11 8 7 38 38 H 1.09002 * 109.46828 * 54.36233 * 11 8 7 39 39 H 1.09002 * 109.47052 * 299.99951 * 12 11 8 40 40 H 1.09004 * 109.46597 * 59.99969 * 12 11 8 41 41 H 0.97006 * 119.99740 * 179.97438 * 16 15 13 42 42 H 0.97006 * 119.99725 * 4.92509 * 22 21 6 43 43 H 0.96997 * 120.00784 * 184.92695 * 22 21 6 44 44 H 1.08996 * 109.47277 * 179.97438 * 24 6 5 45 45 H 1.08992 * 109.47428 * 300.00206 * 24 6 5 46 46 H 1.09001 * 109.46804 * 180.02562 * 25 2 1 47 47 H 1.08995 * 109.47589 * 59.99927 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2491 6 6 2.0399 -2.8850 -0.0002 7 7 3.5049 -2.8851 -0.0002 8 16 4.3329 -3.4427 1.3210 9 8 5.6986 -3.3685 0.9357 10 8 3.8332 -2.6663 2.4012 11 6 3.8111 -5.1722 1.4855 12 6 4.6188 -5.8452 2.5970 13 6 4.1848 -7.2819 2.7340 14 1 3.4106 -7.6757 2.0922 15 6 4.7769 -8.0938 3.6780 16 7 5.7200 -7.6144 4.4593 17 14 4.2394 -9.8748 3.8474 18 1 4.4729 -10.5864 2.5650 19 1 5.0234 -10.5280 4.9264 20 1 2.7945 -9.9257 4.1858 21 6 1.5380 -4.3060 0.0001 22 7 2.1768 -5.2465 -0.7237 23 8 0.5592 -4.6032 0.6516 24 6 1.5298 -2.1638 -1.2494 25 6 2.0399 -0.7212 -1.2493 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2489 34 1 1.8936 -2.6778 2.1389 35 1 0.4400 -2.1638 1.2492 36 1 3.9899 -2.5584 -0.7742 37 1 2.7504 -5.2097 1.7334 38 1 3.9828 -5.6946 0.5443 39 1 5.6796 -5.8078 2.3490 40 1 4.4471 -5.3228 3.5382 41 1 6.1363 -8.1856 5.1237 42 1 2.9998 -5.0257 -1.1874 43 1 1.8137 -6.1441 -0.7811 44 1 1.8935 -2.6773 -2.1394 45 1 0.4399 -2.1637 -1.2494 46 1 3.1299 -0.7216 -1.2492 47 1 1.6765 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340085821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:09 Heat of formation + Delta-G solvation = -156.075562 kcal Electronic energy + Delta-G solvation = -29441.818038 eV Core-core repulsion = 25556.777700 eV Total energy + Delta-G solvation = -3885.040337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95114 -39.57343 -38.20558 -37.06580 -36.33890 -35.95593 -34.50962 -33.07737 -31.88143 -31.67133 -28.09349 -27.71566 -27.56961 -24.02573 -23.56461 -23.40571 -21.38329 -20.38976 -19.25908 -19.18635 -18.82495 -18.39549 -17.80029 -17.15091 -16.89600 -16.59125 -16.18855 -15.87230 -15.59598 -15.43727 -15.33697 -14.96168 -14.57138 -14.51162 -14.21247 -13.83612 -13.68316 -13.39965 -13.22283 -13.12945 -12.97080 -12.94027 -12.82323 -12.63677 -12.50653 -12.42161 -12.29341 -12.22672 -12.07240 -11.98568 -11.75750 -11.73954 -11.31293 -11.15186 -11.02535 -10.77343 -10.66324 -10.58260 -10.32781 -8.27382 -6.40868 -0.79073 1.29498 1.38606 1.42303 1.50121 1.81171 2.36047 2.39904 2.68934 3.06105 3.20559 3.53956 3.60123 3.78578 3.84818 3.98417 4.05429 4.08372 4.09431 4.32983 4.43308 4.56054 4.59921 4.68578 4.70464 4.89542 4.92413 4.97850 5.03469 5.10596 5.14750 5.21495 5.23091 5.26398 5.27476 5.29316 5.44354 5.52925 5.57175 5.66295 5.71362 5.85150 6.03424 6.06402 6.33138 6.71503 7.21992 7.28973 8.84693 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.003906 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.040037 B = 7166.474562 C = 7702.588256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.095 4.095 5 C -0.139 4.139 6 C 0.173 3.827 7 N -1.089 6.089 8 S 2.609 3.391 9 O -0.987 6.987 10 O -0.977 6.977 11 C -0.595 4.595 12 C 0.027 3.973 13 C -0.536 4.536 14 H 0.073 0.927 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.497 3.503 22 N -0.835 5.835 23 O -0.567 6.567 24 C -0.106 4.106 25 C -0.105 4.105 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.435 0.565 37 H 0.120 0.880 38 H 0.152 0.848 39 H 0.013 0.987 40 H -0.001 1.001 41 H 0.267 0.733 42 H 0.416 0.584 43 H 0.412 0.588 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 14.395 -18.282 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.133 4.133 5 C -0.178 4.178 6 C 0.081 3.919 7 N -0.854 5.854 8 S 2.705 3.295 9 O -0.978 6.978 10 O -0.967 6.967 11 C -0.726 4.726 12 C -0.011 4.011 13 C -0.575 4.575 14 H 0.091 0.909 15 C -0.200 4.200 16 N -0.572 5.572 17 Si 0.795 3.205 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.280 3.720 22 N -0.400 5.400 23 O -0.444 6.444 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.274 0.726 37 H 0.138 0.862 38 H 0.170 0.830 39 H 0.031 0.969 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.247 0.753 43 H 0.244 0.756 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.439 14.817 -17.027 24.466 hybrid contribution 0.194 -1.729 0.259 1.759 sum -9.245 13.088 -16.768 23.193 Atomic orbital electron populations 1.21979 0.94151 1.01954 1.02104 1.20633 0.96124 0.95499 0.94693 1.21834 1.00835 0.94797 1.02172 1.21465 1.00528 0.93353 0.97965 1.22163 1.02291 0.97454 0.95898 1.20448 0.79325 0.91018 1.01119 1.55429 1.13604 1.80128 1.36194 1.04864 0.73151 0.77501 0.73965 1.93527 1.34174 1.87479 1.82572 1.93541 1.80252 1.67228 1.55641 1.30677 1.10415 1.21852 1.09689 1.18755 0.94277 0.96907 0.91207 1.21417 1.21334 0.95415 1.19315 0.90913 1.26070 0.94819 1.04045 0.95078 1.70091 1.26652 1.38449 1.22051 0.85409 0.78383 0.78314 0.78422 1.18319 1.20865 1.19431 1.21299 0.83579 0.88712 0.78426 1.43962 1.29364 1.14410 1.52305 1.90781 1.28768 1.82282 1.42600 1.21845 1.02565 0.96394 0.93711 1.21628 1.01399 0.93396 0.97795 0.93278 0.91118 0.92547 0.93010 0.91068 0.93173 0.92597 0.92554 0.91776 0.89438 0.72552 0.86187 0.83027 0.96916 0.98293 0.92387 0.75257 0.75581 0.87722 0.89036 0.90895 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.78 71.98 0.56 -1.59 16 2 C -0.07 -1.12 0.77 -52.18 -0.04 -1.16 16 3 C -0.14 -2.00 8.47 71.98 0.61 -1.39 16 4 C -0.10 -2.29 4.12 30.59 0.13 -2.16 16 5 C -0.14 -3.77 3.36 30.59 0.10 -3.67 16 6 C 0.17 3.70 0.67 2.86 0.00 3.71 16 7 N -1.09 -23.21 3.61 -155.19 -0.56 -23.77 16 8 S 2.61 89.50 5.31 -56.49 -0.30 89.20 16 9 O -0.99 -38.83 18.08 -127.65 -2.31 -41.13 16 10 O -0.98 -39.23 13.28 -127.65 -1.70 -40.92 16 11 C -0.59 -22.82 4.10 71.98 0.29 -22.52 16 12 C 0.03 1.44 4.98 29.85 0.15 1.59 16 13 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 17 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.50 12.50 4.23 87.66 0.37 12.87 16 22 N -0.84 -15.41 6.57 -173.53 -1.14 -16.55 16 23 O -0.57 -19.27 16.73 -3.04 -0.05 -19.32 16 24 C -0.11 -1.39 4.47 30.59 0.14 -1.25 16 25 C -0.10 -1.24 4.56 30.60 0.14 -1.10 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.91 4.81 -2.39 -0.01 0.90 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.50 6.53 -2.39 -0.02 1.48 16 34 H 0.06 2.23 5.65 -2.38 -0.01 2.21 16 35 H 0.09 2.30 6.17 -2.39 -0.01 2.28 16 36 H 0.43 6.11 7.67 -96.74 -0.74 5.36 16 37 H 0.12 4.68 6.18 -2.39 -0.01 4.66 16 38 H 0.15 4.72 6.49 -2.39 -0.02 4.70 16 39 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 41 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 42 H 0.42 5.22 7.77 -92.70 -0.72 4.50 16 43 H 0.41 7.23 8.93 -92.71 -0.83 6.40 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.21 6.43 -2.39 -0.02 1.19 16 46 H 0.07 0.83 7.01 -2.39 -0.02 0.81 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -80.63 360.92 -1.87 -82.50 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -1.27 Total: 26.94 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 3.15 Total: -45.99 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -1.42 Total: -97.07 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -4.05 Total: -101.38 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 89.50 SS G_CDS: -0.30 Total: 89.20 kcal Total: -80.63 -1.87 -82.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340085821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.571 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds