Wall clock time and date at job start Tue Mar 31 2020 16:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34986 * 125.97626 * 124.71621 * 10 9 7 12 12 C 1.35217 * 107.88123 * 179.89883 * 11 10 9 13 13 C 1.40462 * 107.86255 * 0.36501 * 12 11 10 14 14 N 1.39929 * 125.98112 * 179.79664 * 13 12 11 15 15 C 1.34777 * 119.99785 * 0.02562 * 14 13 12 16 16 O 1.21381 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.49341 * 120.00174 * 180.02562 * 15 14 13 18 18 O 1.21360 * 120.00015 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00174 * 179.97438 * 17 15 14 20 20 C 1.47061 * 136.05688 * 359.62346 * 19 17 15 21 21 C 1.53238 * 88.08348 * 207.20701 * 20 19 17 22 22 C 1.53001 * 114.32677 * 220.47041 * 21 20 19 23 23 C 1.53779 * 113.61484 * 252.89721 * 22 21 20 24 24 C 1.53957 * 87.01850 * 220.04544 * 23 22 21 25 25 C 1.53780 * 87.11327 * 25.36226 * 24 23 22 26 26 C 1.47066 * 136.06021 * 179.97438 * 19 17 15 27 27 N 1.31277 * 108.04265 * 359.77259 * 13 12 11 28 28 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 30 30 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 31 31 H 1.08005 * 126.05779 * 0.02562 * 11 10 9 32 32 H 1.07987 * 126.06890 * 180.14287 * 12 11 10 33 33 H 0.96995 * 120.00218 * 180.02562 * 14 13 12 34 34 H 1.09001 * 113.46989 * 321.94187 * 20 19 17 35 35 H 1.09008 * 113.46911 * 92.37927 * 20 19 17 36 36 H 1.08995 * 114.01684 * 87.71810 * 21 20 19 37 37 H 1.09010 * 112.85126 * 24.08974 * 22 21 20 38 38 H 1.09000 * 113.61446 * 334.56736 * 23 22 21 39 39 H 1.09002 * 113.62096 * 105.47042 * 23 22 21 40 40 H 1.08994 * 113.54156 * 270.80996 * 24 23 22 41 41 H 1.09001 * 113.66478 * 139.92949 * 24 23 22 42 42 H 1.08997 * 113.61627 * 220.09147 * 25 24 23 43 43 H 1.08997 * 113.69123 * 89.19288 * 25 24 23 44 44 H 1.08997 * 113.46804 * 267.62962 * 26 19 17 45 45 H 1.09007 * 113.46258 * 38.00346 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8470 -3.1128 -0.9211 12 6 5.0532 -4.4047 -0.5791 13 6 4.2965 -4.6712 0.5739 14 7 4.2285 -5.8957 1.2477 15 6 4.9320 -6.9530 0.7967 16 8 5.6242 -6.8433 -0.1944 17 6 4.8591 -8.2600 1.5155 18 8 4.1666 -8.3699 2.5061 19 7 5.5622 -9.3176 1.0641 20 6 6.4744 -9.5812 -0.0589 21 6 6.0460 -11.0511 0.0054 22 6 7.1881 -12.0497 -0.1929 23 6 7.1567 -12.7584 -1.5573 24 6 7.5670 -14.0407 -0.8105 25 6 6.9214 -13.4248 0.4420 26 6 5.7501 -10.7173 1.4742 27 7 3.6646 -3.5704 0.9090 28 1 -0.4850 0.8400 0.0004 29 1 3.8711 -0.6780 -0.9023 30 1 3.8785 -0.6824 0.8776 31 1 5.2843 -2.6012 -1.7658 32 1 5.6844 -5.1078 -1.1019 33 1 3.6750 -5.9835 2.0395 34 1 6.1796 -9.0847 -0.9834 35 1 7.5243 -9.4238 0.1885 36 1 5.1612 -11.2817 -0.5879 37 1 8.1632 -11.6335 0.0605 38 1 6.1619 -12.8102 -1.9997 39 1 7.9128 -12.3973 -2.2546 40 1 8.6461 -14.1694 -0.7270 41 1 7.0592 -14.9366 -1.1677 42 1 7.4877 -13.6006 1.3565 43 1 5.8621 -13.6583 0.5485 44 1 6.6050 -10.8654 2.1339 45 1 4.8406 -11.1847 1.8519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356709260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:44 Heat of formation + Delta-G solvation = 85.259814 kcal Electronic energy + Delta-G solvation = -27136.037549 eV Core-core repulsion = 23158.311098 eV Total energy + Delta-G solvation = -3977.726450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35894 -40.72720 -39.68604 -38.45808 -37.59072 -34.98980 -33.31085 -31.34072 -30.79492 -29.51628 -27.57562 -26.85912 -26.28825 -25.72974 -24.36642 -22.49026 -21.56760 -20.77261 -20.00189 -19.92178 -19.28289 -17.87854 -17.20505 -16.96397 -16.62421 -16.55296 -15.93677 -15.62463 -15.48227 -15.04066 -14.61875 -14.26494 -14.06250 -13.72564 -13.57268 -13.22436 -13.19325 -13.09043 -12.87889 -12.60862 -12.51403 -12.44686 -12.17541 -11.99678 -11.63801 -11.21280 -11.17974 -10.98217 -10.90328 -10.65507 -10.57853 -10.49060 -10.14516 -10.02066 -9.58310 -9.50155 -9.15908 -8.78317 -8.30231 -7.65699 -6.24731 -4.27676 1.19710 1.86426 2.58536 2.91305 3.00605 3.15303 3.19785 3.23555 3.56508 3.61467 3.69804 4.14568 4.21016 4.21497 4.28357 4.36450 4.54503 4.60649 4.77883 4.92032 4.96830 5.02486 5.15273 5.18462 5.30578 5.31466 5.31927 5.33690 5.44760 5.49158 5.54860 5.61230 5.72814 5.83382 6.01895 6.04602 6.25709 6.33388 6.39797 6.58527 7.10346 7.16847 7.18453 7.29063 7.59148 7.73369 7.93931 8.30032 8.45531 8.84690 9.29565 10.87877 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.001873 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.166944 B =14944.470586 C =15318.376242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.255 3.745 14 N -0.600 5.600 15 C 0.518 3.482 16 O -0.496 6.496 17 C 0.543 3.457 18 O -0.516 6.516 19 N -0.623 5.623 20 C 0.110 3.890 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.136 4.136 26 C 0.114 3.886 27 N -0.288 5.288 28 H 0.269 0.731 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.424 0.576 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.716 -25.581 -1.887 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.002 3.998 14 N -0.248 5.248 15 C 0.298 3.702 16 O -0.369 6.369 17 C 0.327 3.673 18 O -0.392 6.392 19 N -0.359 5.359 20 C -0.012 4.012 21 C -0.137 4.137 22 C -0.118 4.118 23 C -0.173 4.173 24 C -0.182 4.182 25 C -0.174 4.174 26 C -0.008 4.008 27 N -0.118 5.118 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.261 0.739 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.688 -24.563 -1.136 29.717 hybrid contribution 0.501 0.692 -0.103 0.860 sum 17.189 -23.872 -1.238 29.442 Atomic orbital electron populations 1.69873 1.06158 1.27336 1.48954 1.24834 0.94880 0.98806 0.94212 0.86884 0.80198 0.83798 0.79021 1.19685 1.18967 1.20559 1.21103 0.87709 0.95782 1.52896 0.89597 1.20101 0.97562 0.72765 0.98350 1.48700 1.32501 1.10215 1.18249 1.22570 0.95891 0.94578 0.96515 1.21526 1.11490 0.96932 1.01351 1.19014 0.99625 0.86285 0.94888 1.42002 1.45888 1.06790 1.30153 1.19799 0.80974 0.84411 0.85038 1.90677 1.38456 1.83289 1.24448 1.19415 0.80520 0.83361 0.84005 1.90802 1.39825 1.83211 1.25315 1.49199 1.44878 1.10714 1.31081 1.23193 0.94299 0.93113 0.90600 1.23043 0.99654 0.94420 0.96538 1.22475 0.97919 0.93793 0.97583 1.22991 1.02156 0.96131 0.96002 1.22850 1.00801 0.97564 0.96990 1.22917 1.01421 0.95377 0.97635 1.23118 1.02142 0.78581 0.96965 1.77480 1.23096 0.95394 1.15861 0.92135 0.92746 0.94307 0.81137 0.82000 0.73868 0.88807 0.89146 0.87412 0.88583 0.89876 0.91272 0.90240 0.91477 0.91367 0.89866 0.89132 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.13 9.79 -34.44 -0.34 -15.46 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.23 5.42 5.33 -5.20 -0.03 5.39 16 10 N -0.31 -7.05 3.67 -62.56 -0.23 -7.28 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.28 9.60 -39.82 -0.38 -5.66 16 13 C 0.26 5.12 8.10 -154.55 -1.25 3.87 16 14 N -0.60 -10.16 5.43 -11.58 -0.06 -10.22 16 15 C 0.52 7.95 7.85 -11.64 -0.09 7.85 16 16 O -0.50 -7.89 12.33 5.47 0.07 -7.82 16 17 C 0.54 7.50 8.13 -11.64 -0.09 7.41 16 18 O -0.52 -8.23 17.25 5.49 0.09 -8.13 16 19 N -0.62 -6.51 3.69 -185.97 -0.69 -7.20 16 20 C 0.11 0.84 7.18 -8.66 -0.06 0.78 16 21 C -0.12 -0.64 3.85 -90.23 -0.35 -0.99 16 22 C -0.10 -0.40 3.58 -89.81 -0.32 -0.72 16 23 C -0.14 -0.56 7.66 -25.83 -0.20 -0.76 16 24 C -0.14 -0.56 8.09 -25.83 -0.21 -0.77 16 25 C -0.14 -0.53 7.37 -25.92 -0.19 -0.72 16 26 C 0.11 0.80 7.92 -8.52 -0.07 0.73 16 27 N -0.29 -6.64 12.42 31.41 0.39 -6.25 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 30 H 0.04 0.90 7.57 -51.93 -0.39 0.50 16 31 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16 32 H 0.16 2.83 5.91 -52.49 -0.31 2.52 16 33 H 0.42 6.69 8.29 -40.82 -0.34 6.35 16 34 H 0.09 0.82 7.40 -51.93 -0.38 0.43 16 35 H 0.09 0.58 7.95 -51.92 -0.41 0.16 16 36 H 0.11 0.61 7.95 -51.93 -0.41 0.19 16 37 H 0.10 0.36 7.94 -51.92 -0.41 -0.06 16 38 H 0.08 0.35 7.96 -51.93 -0.41 -0.06 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 44 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -34.01 377.76 -8.92 -42.93 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.42 Total: 4.87 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -3.88 Total: 3.81 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.18 Total: -56.74 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.16 Total: -15.96 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.01 -8.92 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356709260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.189 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds