Wall clock time and date at job start Tue Mar 31 2020 16:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34986 * 125.97626 * 124.71621 * 10 9 7 12 12 C 1.35217 * 107.88123 * 179.89883 * 11 10 9 13 13 C 1.40462 * 107.86255 * 0.36501 * 12 11 10 14 14 N 1.39929 * 125.98112 * 179.79664 * 13 12 11 15 15 C 1.34777 * 119.99785 * 0.02562 * 14 13 12 16 16 O 1.21381 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.49341 * 120.00174 * 180.02562 * 15 14 13 18 18 O 1.21360 * 120.00015 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00174 * 179.97438 * 17 15 14 20 20 C 1.47061 * 136.05688 * 359.62346 * 19 17 15 21 21 C 1.53238 * 88.08348 * 207.20701 * 20 19 17 22 22 C 1.53001 * 114.32677 * 220.47041 * 21 20 19 23 23 C 1.53779 * 113.61484 * 252.89721 * 22 21 20 24 24 C 1.53957 * 87.01850 * 220.04544 * 23 22 21 25 25 C 1.53780 * 87.11327 * 25.36226 * 24 23 22 26 26 C 1.47066 * 136.06021 * 179.97438 * 19 17 15 27 27 N 1.31277 * 108.04265 * 359.77259 * 13 12 11 28 28 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 30 30 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 31 31 H 1.08005 * 126.05779 * 0.02562 * 11 10 9 32 32 H 1.07987 * 126.06890 * 180.14287 * 12 11 10 33 33 H 0.96995 * 120.00218 * 180.02562 * 14 13 12 34 34 H 1.09001 * 113.46989 * 321.94187 * 20 19 17 35 35 H 1.09008 * 113.46911 * 92.37927 * 20 19 17 36 36 H 1.08995 * 114.01684 * 87.71810 * 21 20 19 37 37 H 1.09010 * 112.85126 * 24.08974 * 22 21 20 38 38 H 1.09000 * 113.61446 * 334.56736 * 23 22 21 39 39 H 1.09002 * 113.62096 * 105.47042 * 23 22 21 40 40 H 1.08994 * 113.54156 * 270.80996 * 24 23 22 41 41 H 1.09001 * 113.66478 * 139.92949 * 24 23 22 42 42 H 1.08997 * 113.61627 * 220.09147 * 25 24 23 43 43 H 1.08997 * 113.69123 * 89.19288 * 25 24 23 44 44 H 1.08997 * 113.46804 * 267.62962 * 26 19 17 45 45 H 1.09007 * 113.46258 * 38.00346 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8470 -3.1128 -0.9211 12 6 5.0532 -4.4047 -0.5791 13 6 4.2965 -4.6712 0.5739 14 7 4.2285 -5.8957 1.2477 15 6 4.9320 -6.9530 0.7967 16 8 5.6242 -6.8433 -0.1944 17 6 4.8591 -8.2600 1.5155 18 8 4.1666 -8.3699 2.5061 19 7 5.5622 -9.3176 1.0641 20 6 6.4744 -9.5812 -0.0589 21 6 6.0460 -11.0511 0.0054 22 6 7.1881 -12.0497 -0.1929 23 6 7.1567 -12.7584 -1.5573 24 6 7.5670 -14.0407 -0.8105 25 6 6.9214 -13.4248 0.4420 26 6 5.7501 -10.7173 1.4742 27 7 3.6646 -3.5704 0.9090 28 1 -0.4850 0.8400 0.0004 29 1 3.8711 -0.6780 -0.9023 30 1 3.8785 -0.6824 0.8776 31 1 5.2843 -2.6012 -1.7658 32 1 5.6844 -5.1078 -1.1019 33 1 3.6750 -5.9835 2.0395 34 1 6.1796 -9.0847 -0.9834 35 1 7.5243 -9.4238 0.1885 36 1 5.1612 -11.2817 -0.5879 37 1 8.1632 -11.6335 0.0605 38 1 6.1619 -12.8102 -1.9997 39 1 7.9128 -12.3973 -2.2546 40 1 8.6461 -14.1694 -0.7270 41 1 7.0592 -14.9366 -1.1677 42 1 7.4877 -13.6006 1.3565 43 1 5.8621 -13.6583 0.5485 44 1 6.6050 -10.8654 2.1339 45 1 4.8406 -11.1847 1.8519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356709260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:43 Heat of formation + Delta-G solvation = 62.453572 kcal Electronic energy + Delta-G solvation = -27137.026502 eV Core-core repulsion = 23158.311098 eV Total energy + Delta-G solvation = -3978.715403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52308 -41.87803 -40.69474 -39.40464 -38.31138 -36.43050 -35.23976 -33.16173 -31.58929 -31.07856 -29.25325 -27.61977 -26.97543 -26.13146 -25.48543 -24.15866 -22.67930 -21.91812 -21.29455 -20.45237 -20.23965 -19.13391 -18.91781 -18.29504 -17.95471 -17.46375 -16.99562 -16.62788 -16.43741 -16.19706 -16.12647 -15.55592 -14.98862 -14.94505 -14.79162 -14.46771 -14.36258 -13.93296 -13.89936 -13.83269 -13.62054 -13.19689 -13.12266 -12.96619 -12.73808 -12.61088 -12.42904 -12.22914 -11.83574 -11.75123 -11.67272 -11.51062 -11.33353 -11.11915 -10.89561 -10.88597 -10.58944 -9.99021 -9.86631 -9.23128 -8.38102 -6.49159 0.00261 0.73141 1.10051 1.35940 1.39980 1.48468 1.67212 1.73103 2.21300 2.28629 2.36517 2.94568 3.01266 3.18005 3.76192 3.83518 3.84987 4.03255 4.05090 4.14835 4.18117 4.32363 4.36346 4.48526 4.54019 4.55745 4.63069 4.64789 4.76119 4.81515 4.82596 4.97116 4.99054 5.00978 5.01761 5.20923 5.22637 5.24666 5.28577 5.48086 5.71665 5.73942 5.84589 5.97046 6.24826 6.36066 6.39945 6.56833 6.72442 6.90677 7.13802 8.79038 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.001873 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.166944 B =14944.470586 C =15318.376242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.226 1.226 6 H -0.278 1.278 7 C -0.550 4.550 8 H 0.024 0.976 9 C 0.238 3.762 10 N -0.339 5.339 11 C 0.067 3.933 12 C -0.287 4.287 13 C 0.258 3.742 14 N -0.605 5.605 15 C 0.520 3.480 16 O -0.500 6.500 17 C 0.542 3.458 18 O -0.547 6.547 19 N -0.622 5.622 20 C 0.105 3.895 21 C -0.097 4.097 22 C -0.092 4.092 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.135 4.135 26 C 0.110 3.890 27 N -0.345 5.345 28 H 0.272 0.728 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.218 0.782 32 H 0.177 0.823 33 H 0.426 0.574 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.053 -25.871 -2.926 33.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.148 1.148 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.043 0.957 9 C 0.118 3.882 10 N -0.121 5.121 11 C -0.082 4.082 12 C -0.318 4.318 13 C 0.004 3.996 14 N -0.254 5.254 15 C 0.301 3.699 16 O -0.372 6.372 17 C 0.325 3.675 18 O -0.425 6.425 19 N -0.356 5.356 20 C -0.017 4.017 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.175 4.175 24 C -0.183 4.183 25 C -0.173 4.173 26 C -0.011 4.011 27 N -0.176 5.176 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.234 0.766 32 H 0.194 0.806 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.082 -24.935 -2.207 32.092 hybrid contribution -0.527 0.528 0.170 0.765 sum 19.555 -24.407 -2.036 31.340 Atomic orbital electron populations 1.70058 1.08672 1.28840 1.50572 1.25960 0.95791 1.03666 0.93153 0.85592 0.79987 0.77036 0.79574 1.19223 1.14833 1.20355 1.21245 0.90615 0.93716 1.53216 0.95723 1.19957 0.94081 0.74165 0.99958 1.48589 1.34099 1.09957 1.19491 1.23339 0.93994 0.94518 0.96301 1.21781 1.11593 0.97457 1.00977 1.19371 0.98569 0.86512 0.95132 1.42152 1.46514 1.06399 1.30327 1.20209 0.80139 0.84649 0.84860 1.90646 1.38467 1.83507 1.24622 1.19057 0.81292 0.83397 0.83724 1.90787 1.41607 1.83587 1.26569 1.49465 1.43714 1.10925 1.31528 1.23481 0.94744 0.94236 0.89227 1.22926 1.00131 0.93362 0.95176 1.22469 0.97605 0.93360 0.97667 1.23015 1.02143 0.96340 0.96048 1.22866 1.01110 0.97396 0.96897 1.22923 1.01499 0.94965 0.97882 1.23443 1.03013 0.76190 0.98421 1.77389 1.25488 0.96818 1.17897 0.91879 0.89365 0.93633 0.76577 0.80561 0.73654 0.89836 0.87184 0.87490 0.87534 0.90112 0.91132 0.89777 0.91586 0.90779 0.89986 0.87004 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.01 0.74 5.47 84.65 0.46 1.21 16 3 Si 0.96 40.60 27.47 68.60 1.88 42.49 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.23 -8.11 6.54 99.48 0.65 -7.46 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.89 9.79 25.60 0.25 -31.64 16 8 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 9 C 0.24 10.90 5.33 85.63 0.46 11.35 16 10 N -0.34 -15.06 3.67 -351.85 -1.29 -16.35 16 11 C 0.07 2.35 11.43 83.51 0.95 3.30 16 12 C -0.29 -10.43 9.60 22.12 0.21 -10.22 16 13 C 0.26 10.51 8.10 133.40 1.08 11.59 16 14 N -0.60 -21.02 5.43 -308.90 -1.68 -22.70 16 15 C 0.52 15.97 7.85 87.24 0.69 16.65 16 16 O -0.50 -15.47 12.33 -3.34 -0.04 -15.51 16 17 C 0.54 14.91 8.13 87.24 0.71 15.62 16 18 O -0.55 -17.73 17.25 -3.28 -0.06 -17.78 16 19 N -0.62 -12.24 3.69 -860.63 -3.18 -15.42 16 20 C 0.10 1.39 7.18 83.08 0.60 1.98 16 21 C -0.10 -0.85 3.85 -10.54 -0.04 -0.89 16 22 C -0.09 -0.51 3.58 -10.27 -0.04 -0.55 16 23 C -0.14 -0.87 7.66 31.18 0.24 -0.63 16 24 C -0.15 -0.84 8.09 31.18 0.25 -0.59 16 25 C -0.14 -0.73 7.37 31.12 0.23 -0.50 16 26 C 0.11 1.33 7.92 83.17 0.66 1.99 16 27 N -0.35 -16.41 12.42 -54.53 -0.68 -17.09 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.09 3.44 7.12 -2.39 -0.02 3.42 16 30 H 0.05 2.02 7.57 -2.39 -0.02 2.00 16 31 H 0.22 5.32 8.06 -2.91 -0.02 5.30 16 32 H 0.18 5.82 5.91 -2.92 -0.02 5.81 16 33 H 0.43 14.20 8.29 -92.71 -0.77 13.43 16 34 H 0.08 1.33 7.40 -2.39 -0.02 1.31 16 35 H 0.11 1.09 7.95 -2.38 -0.02 1.07 16 36 H 0.11 1.01 7.95 -2.39 -0.02 0.99 16 37 H 0.11 0.43 7.94 -2.38 -0.02 0.42 16 38 H 0.08 0.55 7.96 -2.39 -0.02 0.53 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 44 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 45 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -78.26 377.76 2.17 -76.09 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.20 Total: 25.88 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.71 Total: 18.67 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -6.52 Total: -129.84 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.10 Total: -33.29 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.49 kcal Total: -78.26 2.17 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356709260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.541 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds