Wall clock time and date at job start Tue Mar 31 2020 16:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47233 * 299.99988 * 3 2 1 6 6 H 1.48495 * 109.47432 * 60.00359 * 3 2 1 7 7 C 1.37879 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00044 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.34978 * 125.97176 * 124.99746 * 10 9 7 12 12 C 1.35223 * 107.87877 * 179.71014 * 11 10 9 13 13 C 1.40462 * 107.86169 * 0.42611 * 12 11 10 14 14 N 1.39930 * 125.97765 * 179.82834 * 13 12 11 15 15 C 1.34777 * 119.99993 * 359.44305 * 14 13 12 16 16 O 1.21383 * 120.00286 * 0.27931 * 15 14 13 17 17 C 1.49342 * 120.00103 * 180.27738 * 15 14 13 18 18 O 1.21363 * 120.00091 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00099 * 180.02562 * 17 15 14 20 20 C 1.47648 * 122.07539 * 359.70665 * 19 17 15 21 21 C 1.53657 * 106.71045 * 178.94763 * 20 19 17 22 22 C 1.53048 * 109.63706 * 301.56610 * 21 20 19 23 23 C 1.52937 * 109.99278 * 59.51804 * 22 21 20 24 24 C 1.47709 * 122.07507 * 179.97438 * 19 17 15 25 25 C 1.53337 * 107.96899 * 121.30335 * 24 19 17 26 26 C 1.53056 * 109.00077 * 61.02028 * 21 20 19 27 27 N 1.31275 * 108.04129 * 359.57041 * 13 12 11 28 28 H 0.97001 * 120.00337 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47035 * 59.99997 * 9 7 2 30 30 H 1.08999 * 109.47248 * 299.99817 * 9 7 2 31 31 H 1.08003 * 126.06222 * 0.02562 * 11 10 9 32 32 H 1.07998 * 126.06807 * 180.28464 * 12 11 10 33 33 H 0.97001 * 120.00220 * 179.72544 * 14 13 12 34 34 H 1.08997 * 110.00188 * 299.32937 * 20 19 17 35 35 H 1.08997 * 110.00028 * 60.72458 * 20 19 17 36 36 H 1.09000 * 109.66950 * 181.09416 * 21 20 19 37 37 H 1.09004 * 109.38518 * 299.35961 * 22 21 20 38 38 H 1.08998 * 109.29884 * 179.62432 * 22 21 20 39 39 H 1.08998 * 109.45488 * 239.33274 * 23 22 21 40 40 H 1.08998 * 109.45764 * 119.39809 * 23 22 21 41 41 H 1.09004 * 110.55950 * 0.25884 * 24 19 17 42 42 H 1.08995 * 109.44884 * 176.50506 * 25 24 19 43 43 H 1.09000 * 109.44729 * 296.43699 * 25 24 19 44 44 H 1.09001 * 109.38925 * 59.52366 * 26 21 20 45 45 H 1.09004 * 109.37972 * 179.20136 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2428 -4.6229 0.8926 12 6 3.2568 -5.4466 0.5437 13 6 3.8681 -4.9152 -0.6038 14 7 4.9614 -5.4653 -1.2823 15 6 5.5291 -6.6029 -0.8350 16 8 5.0890 -7.1530 0.1534 17 6 6.6998 -7.1866 -1.5555 18 8 7.1396 -6.6368 -2.5441 19 7 7.2673 -8.3244 -1.1086 20 6 6.7730 -9.0281 0.0917 21 6 7.6481 -10.2797 0.2617 22 6 7.5523 -11.1488 -0.9945 23 6 8.0242 -10.3574 -2.2151 24 6 8.4258 -8.9417 -1.7857 25 6 9.5739 -9.0295 -0.7731 26 6 9.1023 -9.8473 0.4641 27 7 3.2309 -3.8153 -0.9316 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6248 -2.5572 0.8897 31 1 1.5788 -4.7531 1.7344 32 1 3.5467 -6.3512 1.0576 33 1 5.3132 -5.0257 -2.0721 34 1 6.8504 -8.3782 0.9632 35 1 5.7374 -9.3343 -0.0557 36 1 7.3105 -10.8485 1.1280 37 1 6.5176 -11.4585 -1.1421 38 1 8.1799 -12.0312 -0.8707 39 1 7.2166 -10.2997 -2.9448 40 1 8.8825 -10.8582 -2.6629 41 1 8.7235 -8.3497 -2.6512 42 1 10.4225 -9.5387 -1.2299 43 1 9.8719 -8.0246 -0.4742 44 1 9.1723 -9.2172 1.3508 45 1 9.7267 -10.7304 0.5996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364797009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:41 Heat of formation + Delta-G solvation = 17.045457 kcal Electronic energy + Delta-G solvation = -28237.563369 eV Core-core repulsion = 24256.878922 eV Total energy + Delta-G solvation = -3980.684447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47769 -40.63493 -39.45897 -38.10783 -35.12492 -33.55580 -33.24463 -31.97899 -31.13033 -31.02926 -29.40896 -27.20618 -26.27969 -24.66607 -23.11620 -23.05777 -22.53334 -21.21887 -20.26340 -19.61669 -18.13207 -17.36528 -17.16174 -16.62857 -16.57692 -16.53668 -16.18601 -15.44092 -15.25957 -14.82883 -14.42247 -14.33056 -14.07760 -13.67854 -13.58922 -13.17423 -12.93491 -12.71405 -12.51685 -12.50269 -12.48679 -12.37492 -12.28989 -11.85476 -11.78734 -11.40036 -11.06427 -10.88838 -10.81164 -10.63948 -10.59127 -10.52115 -10.27948 -9.99048 -9.52467 -9.37381 -8.94339 -8.65375 -8.21973 -7.57172 -6.26206 -4.31215 1.24462 2.00900 2.67171 3.03517 3.06243 3.22193 3.29914 3.36897 3.67572 3.74397 4.14606 4.23052 4.25241 4.31389 4.39842 4.57568 4.78910 4.87341 4.90088 4.96270 5.07124 5.09266 5.16159 5.34965 5.43163 5.55136 5.56449 5.57221 5.64879 5.72028 5.74890 5.82103 5.83624 5.85911 6.08834 6.12301 6.35290 6.42936 6.79535 6.91479 7.01680 7.25108 7.31915 7.61799 7.69520 7.85268 7.97711 7.99007 8.54870 8.77884 9.34749 10.82655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.002259 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.159845 B =12391.138871 C =12812.313479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.285 4.285 13 C 0.252 3.748 14 N -0.599 5.599 15 C 0.513 3.487 16 O -0.496 6.496 17 C 0.519 3.481 18 O -0.522 6.522 19 N -0.582 5.582 20 C 0.123 3.877 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.129 4.129 24 C 0.140 3.860 25 C -0.129 4.129 26 C -0.115 4.115 27 N -0.295 5.295 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.422 0.578 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.339 -23.622 0.341 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.317 4.317 13 C -0.001 4.001 14 N -0.248 5.248 15 C 0.293 3.707 16 O -0.369 6.369 17 C 0.301 3.699 18 O -0.398 6.398 19 N -0.317 5.317 20 C 0.001 3.999 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.167 4.167 24 C 0.038 3.962 25 C -0.167 4.167 26 C -0.153 4.153 27 N -0.126 5.126 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.260 0.740 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.930 -22.524 -0.316 27.590 hybrid contribution 0.470 0.581 0.223 0.780 sum 16.400 -21.942 -0.093 27.394 Atomic orbital electron populations 1.69924 1.06044 1.27577 1.49772 1.24947 0.94995 0.99595 0.94548 0.86267 0.80096 0.82400 0.77731 1.19524 1.20659 1.20751 1.21292 0.94055 0.89320 1.52057 0.91204 1.19799 0.85574 0.81259 0.99414 1.49164 1.23028 1.19680 1.17822 1.22578 1.00293 0.90057 0.96786 1.21506 1.02222 1.06268 1.01660 1.19020 0.91441 0.94697 0.94967 1.42013 1.28828 1.23862 1.30071 1.19891 0.84361 0.81312 0.85130 1.90686 1.62036 1.59472 1.24745 1.19834 0.84005 0.81376 0.84689 1.90774 1.63274 1.60098 1.25639 1.48391 1.31357 1.23139 1.28797 1.22230 0.98086 0.92540 0.86994 1.21583 0.95759 0.96073 0.99009 1.21516 1.01837 0.97893 0.93877 1.21924 1.01993 0.94571 0.98190 1.21519 0.84870 0.93907 0.95913 1.22393 0.97215 1.01041 0.96062 1.22011 0.95450 0.99858 0.97932 1.77415 1.03356 1.15944 1.15929 0.92347 0.93562 0.92380 0.81275 0.82159 0.74029 0.89644 0.89938 0.89160 0.91545 0.91416 0.91292 0.90457 0.87570 0.90536 0.91125 0.91594 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.67 9.24 -34.44 -0.32 -14.99 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.46 6.26 -5.19 -0.03 6.43 16 10 N -0.31 -7.23 3.67 -62.56 -0.23 -7.46 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.41 9.60 -39.82 -0.38 -5.79 16 13 C 0.25 5.05 8.10 -154.55 -1.25 3.80 16 14 N -0.60 -10.04 5.43 -11.58 -0.06 -10.11 16 15 C 0.51 7.71 7.80 -11.64 -0.09 7.62 16 16 O -0.50 -7.68 10.71 5.47 0.06 -7.62 16 17 C 0.52 6.94 7.81 -11.64 -0.09 6.85 16 18 O -0.52 -7.93 16.06 5.49 0.09 -7.84 16 19 N -0.58 -6.11 2.81 -164.06 -0.46 -6.57 16 20 C 0.12 1.12 4.48 -3.07 -0.01 1.10 16 21 C -0.11 -0.67 3.26 -90.22 -0.29 -0.96 16 22 C -0.11 -0.66 5.67 -26.74 -0.15 -0.81 16 23 C -0.13 -0.84 5.87 -26.61 -0.16 -1.00 16 24 C 0.14 1.17 3.49 -66.94 -0.23 0.93 16 25 C -0.13 -0.86 5.99 -25.16 -0.15 -1.01 16 26 C -0.11 -0.67 5.79 -25.30 -0.15 -0.82 16 27 N -0.30 -6.83 12.42 31.41 0.39 -6.44 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 32 H 0.16 2.82 5.91 -52.49 -0.31 2.51 16 33 H 0.42 6.59 8.29 -40.82 -0.34 6.25 16 34 H 0.09 0.85 7.44 -51.93 -0.39 0.46 16 35 H 0.08 0.81 7.41 -51.93 -0.39 0.43 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 1.00 7.20 -51.93 -0.37 0.62 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -31.52 365.44 -9.01 -40.53 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.41 Total: 4.31 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.61 Total: 3.79 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.37 Total: -55.07 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.15 Total: -15.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.52 -9.01 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364797009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.580 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds