Wall clock time and date at job start Tue Mar 31 2020 16:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47233 * 299.99988 * 3 2 1 6 6 H 1.48495 * 109.47432 * 60.00359 * 3 2 1 7 7 C 1.37879 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00044 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.34978 * 125.97176 * 124.99746 * 10 9 7 12 12 C 1.35223 * 107.87877 * 179.71014 * 11 10 9 13 13 C 1.40462 * 107.86169 * 0.42611 * 12 11 10 14 14 N 1.39930 * 125.97765 * 179.82834 * 13 12 11 15 15 C 1.34777 * 119.99993 * 359.44305 * 14 13 12 16 16 O 1.21383 * 120.00286 * 0.27931 * 15 14 13 17 17 C 1.49342 * 120.00103 * 180.27738 * 15 14 13 18 18 O 1.21363 * 120.00091 * 359.97438 * 17 15 14 19 19 N 1.34777 * 120.00099 * 180.02562 * 17 15 14 20 20 C 1.47648 * 122.07539 * 359.70665 * 19 17 15 21 21 C 1.53657 * 106.71045 * 178.94763 * 20 19 17 22 22 C 1.53048 * 109.63706 * 301.56610 * 21 20 19 23 23 C 1.52937 * 109.99278 * 59.51804 * 22 21 20 24 24 C 1.47709 * 122.07507 * 179.97438 * 19 17 15 25 25 C 1.53337 * 107.96899 * 121.30335 * 24 19 17 26 26 C 1.53056 * 109.00077 * 61.02028 * 21 20 19 27 27 N 1.31275 * 108.04129 * 359.57041 * 13 12 11 28 28 H 0.97001 * 120.00337 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47035 * 59.99997 * 9 7 2 30 30 H 1.08999 * 109.47248 * 299.99817 * 9 7 2 31 31 H 1.08003 * 126.06222 * 0.02562 * 11 10 9 32 32 H 1.07998 * 126.06807 * 180.28464 * 12 11 10 33 33 H 0.97001 * 120.00220 * 179.72544 * 14 13 12 34 34 H 1.08997 * 110.00188 * 299.32937 * 20 19 17 35 35 H 1.08997 * 110.00028 * 60.72458 * 20 19 17 36 36 H 1.09000 * 109.66950 * 181.09416 * 21 20 19 37 37 H 1.09004 * 109.38518 * 299.35961 * 22 21 20 38 38 H 1.08998 * 109.29884 * 179.62432 * 22 21 20 39 39 H 1.08998 * 109.45488 * 239.33274 * 23 22 21 40 40 H 1.08998 * 109.45764 * 119.39809 * 23 22 21 41 41 H 1.09004 * 110.55950 * 0.25884 * 24 19 17 42 42 H 1.08995 * 109.44884 * 176.50506 * 25 24 19 43 43 H 1.09000 * 109.44729 * 296.43699 * 25 24 19 44 44 H 1.09001 * 109.38925 * 59.52366 * 26 21 20 45 45 H 1.09004 * 109.37972 * 179.20136 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2428 -4.6229 0.8926 12 6 3.2568 -5.4466 0.5437 13 6 3.8681 -4.9152 -0.6038 14 7 4.9614 -5.4653 -1.2823 15 6 5.5291 -6.6029 -0.8350 16 8 5.0890 -7.1530 0.1534 17 6 6.6998 -7.1866 -1.5555 18 8 7.1396 -6.6368 -2.5441 19 7 7.2673 -8.3244 -1.1086 20 6 6.7730 -9.0281 0.0917 21 6 7.6481 -10.2797 0.2617 22 6 7.5523 -11.1488 -0.9945 23 6 8.0242 -10.3574 -2.2151 24 6 8.4258 -8.9417 -1.7857 25 6 9.5739 -9.0295 -0.7731 26 6 9.1023 -9.8473 0.4641 27 7 3.2309 -3.8153 -0.9316 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6248 -2.5572 0.8897 31 1 1.5788 -4.7531 1.7344 32 1 3.5467 -6.3512 1.0576 33 1 5.3132 -5.0257 -2.0721 34 1 6.8504 -8.3782 0.9632 35 1 5.7374 -9.3343 -0.0557 36 1 7.3105 -10.8485 1.1280 37 1 6.5176 -11.4585 -1.1421 38 1 8.1799 -12.0312 -0.8707 39 1 7.2166 -10.2997 -2.9448 40 1 8.8825 -10.8582 -2.6629 41 1 8.7235 -8.3497 -2.6512 42 1 10.4225 -9.5387 -1.2299 43 1 9.8719 -8.0246 -0.4742 44 1 9.1723 -9.2172 1.3508 45 1 9.7267 -10.7304 0.5996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364797009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:40 Heat of formation + Delta-G solvation = -2.017695 kcal Electronic energy + Delta-G solvation = -28238.390009 eV Core-core repulsion = 24256.878922 eV Total energy + Delta-G solvation = -3981.511087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57956 -41.95038 -40.56853 -39.21206 -36.53606 -35.36749 -34.28466 -32.84914 -32.58969 -31.61218 -31.02720 -28.89209 -27.45898 -25.79796 -24.64871 -23.55240 -23.53642 -22.50109 -21.71066 -20.94246 -19.25585 -18.71543 -18.28932 -18.03976 -17.91218 -17.52385 -17.02851 -16.93830 -16.40084 -16.19906 -15.84285 -15.59664 -15.16522 -14.83208 -14.68304 -14.33535 -14.25112 -13.88207 -13.81569 -13.70913 -13.30657 -13.09871 -13.08468 -12.97298 -12.96467 -12.76546 -12.49301 -12.34829 -12.32932 -12.13646 -11.67194 -11.46531 -11.39243 -11.16806 -11.12682 -10.73819 -10.48574 -9.87033 -9.76159 -9.21735 -8.35135 -6.48526 0.04262 0.82806 1.12893 1.35807 1.37973 1.50508 1.72704 1.76871 2.24397 2.31645 2.44245 2.97131 3.08702 3.58797 3.70324 3.76077 3.90419 3.96520 4.19625 4.21200 4.37872 4.41275 4.47056 4.47814 4.59982 4.62898 4.73935 4.82720 4.86558 4.89973 4.90062 4.97684 5.02089 5.11048 5.15603 5.23448 5.29704 5.32548 5.38831 5.45165 5.55062 5.75188 5.77671 5.89092 6.07028 6.24461 6.46798 6.63035 6.74869 6.95709 7.21476 8.72950 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.002259 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.159845 B =12391.138871 C =12812.313479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.271 3.729 10 N -0.340 5.340 11 C 0.061 3.939 12 C -0.286 4.286 13 C 0.258 3.742 14 N -0.603 5.603 15 C 0.516 3.484 16 O -0.498 6.498 17 C 0.518 3.482 18 O -0.546 6.546 19 N -0.571 5.571 20 C 0.117 3.883 21 C -0.100 4.100 22 C -0.111 4.111 23 C -0.125 4.125 24 C 0.132 3.868 25 C -0.126 4.126 26 C -0.112 4.112 27 N -0.343 5.343 28 H 0.273 0.727 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.208 0.792 32 H 0.178 0.822 33 H 0.426 0.574 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.950 -25.606 1.387 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.153 3.847 10 N -0.122 5.122 11 C -0.088 4.088 12 C -0.317 4.317 13 C 0.005 3.995 14 N -0.252 5.252 15 C 0.297 3.703 16 O -0.371 6.371 17 C 0.300 3.700 18 O -0.425 6.425 19 N -0.304 5.304 20 C -0.004 4.004 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.163 4.163 24 C 0.030 3.970 25 C -0.164 4.164 26 C -0.149 4.149 27 N -0.175 5.175 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.195 0.805 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.561 -24.568 0.751 30.208 hybrid contribution 0.032 1.041 -0.085 1.045 sum 17.593 -23.527 0.666 29.385 Atomic orbital electron populations 1.69990 1.07111 1.28728 1.49951 1.25712 0.95852 1.02649 0.93903 0.85318 0.78341 0.78507 0.78361 1.20123 1.19917 1.19296 1.21420 0.93327 0.91049 1.52798 0.93123 1.19392 0.85602 0.81369 0.98379 1.48915 1.23575 1.20420 1.19316 1.23258 1.00416 0.88443 0.96661 1.21748 1.01968 1.06652 1.01287 1.19339 0.91410 0.93782 0.95015 1.42139 1.28343 1.24483 1.30271 1.20292 0.84495 0.80559 0.84982 1.90662 1.62197 1.59353 1.24855 1.19524 0.83694 0.82284 0.84505 1.90765 1.63941 1.61122 1.26666 1.48601 1.31179 1.21834 1.28830 1.22363 0.98558 0.93640 0.85869 1.21601 0.95454 0.94668 1.00087 1.21532 1.02146 0.98307 0.92909 1.21930 1.02506 0.93425 0.98460 1.21793 0.84621 0.94608 0.95952 1.22396 0.97070 1.00859 0.96120 1.22026 0.95323 1.00498 0.97097 1.77327 1.04713 1.17972 1.17439 0.91797 0.95961 0.91833 0.77548 0.80536 0.73649 0.90513 0.90704 0.87378 0.91923 0.89154 0.92644 0.88165 0.89020 0.88257 0.92560 0.92043 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 2 C 0.02 1.07 5.46 84.66 0.46 1.54 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.10 9.24 25.60 0.24 -30.87 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.27 14.01 6.26 85.63 0.54 14.55 16 10 N -0.34 -15.91 3.67 -351.84 -1.29 -17.20 16 11 C 0.06 2.30 11.43 83.51 0.95 3.26 16 12 C -0.29 -10.65 9.60 22.12 0.21 -10.44 16 13 C 0.26 10.52 8.10 133.40 1.08 11.60 16 14 N -0.60 -20.61 5.43 -308.90 -1.68 -22.29 16 15 C 0.52 15.57 7.80 87.24 0.68 16.25 16 16 O -0.50 -15.14 10.71 -3.35 -0.04 -15.17 16 17 C 0.52 13.99 7.81 87.24 0.68 14.67 16 18 O -0.55 -16.99 16.06 -3.29 -0.05 -17.04 16 19 N -0.57 -11.65 2.81 -791.31 -2.22 -13.87 16 20 C 0.12 1.98 4.48 86.38 0.39 2.36 16 21 C -0.10 -0.98 3.26 -10.54 -0.03 -1.02 16 22 C -0.11 -0.95 5.67 30.59 0.17 -0.78 16 23 C -0.13 -1.36 5.87 30.67 0.18 -1.18 16 24 C 0.13 2.03 3.49 44.97 0.16 2.18 16 25 C -0.13 -1.41 5.99 31.61 0.19 -1.22 16 26 C -0.11 -0.97 5.79 31.52 0.18 -0.79 16 27 N -0.34 -16.36 12.42 -54.53 -0.68 -17.04 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 3.16 8.07 -2.39 -0.02 3.14 16 31 H 0.21 5.95 8.06 -2.91 -0.02 5.93 16 32 H 0.18 5.95 5.91 -2.91 -0.02 5.94 16 33 H 0.43 13.81 8.29 -92.71 -0.77 13.04 16 34 H 0.08 1.45 7.44 -2.39 -0.02 1.43 16 35 H 0.07 1.40 7.41 -2.39 -0.02 1.38 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 1.70 7.20 -2.38 -0.02 1.68 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -69.02 365.44 2.68 -66.33 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.25 Total: 21.83 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.08 Total: 20.12 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.58 Total: -122.19 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.09 Total: -32.21 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.02 2.68 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364797009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.315 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds