Wall clock time and date at job start Tue Mar 31 2020 16:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48497 * 109.47362 * 240.00150 * 3 2 1 5 5 H 1.48497 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46902 * 120.00418 * 3 2 1 7 7 C 1.37871 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00685 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34983 * 125.96957 * 125.00332 * 10 9 7 12 12 C 1.35221 * 107.87774 * 180.02562 * 11 10 9 13 13 C 1.40464 * 107.86285 * 359.97438 * 12 11 10 14 14 N 1.39928 * 125.97718 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00072 * 359.97438 * 14 13 12 16 16 O 1.21377 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.49348 * 119.99881 * 180.02562 * 15 14 13 18 18 O 1.21365 * 119.99875 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00174 * 180.02562 * 17 15 14 20 20 C 1.47427 * 125.64665 * 5.34201 * 19 17 15 21 21 C 1.54909 * 104.83140 * 155.83735 * 20 19 17 22 22 C 1.55156 * 101.58423 * 37.01279 * 21 20 19 23 23 C 1.47017 * 125.65046 * 185.30607 * 19 17 15 24 24 H 1.09003 * 109.88035 * 300.50578 * 23 19 17 25 25 C 1.52990 * 109.88587 * 61.67558 * 23 19 17 26 26 C 1.53004 * 117.49898 * 243.71559 * 25 23 19 27 27 C 1.53000 * 117.50200 * 175.05204 * 25 23 19 28 28 N 1.31267 * 108.03935 * 0.26466 * 13 12 11 29 29 H 0.97004 * 120.00143 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.47035 * 59.99899 * 9 7 2 31 31 H 1.08999 * 109.47053 * 300.00873 * 9 7 2 32 32 H 1.08001 * 126.06744 * 0.02562 * 11 10 9 33 33 H 1.07991 * 126.06910 * 179.97438 * 12 11 10 34 34 H 0.97003 * 119.99908 * 180.02562 * 14 13 12 35 35 H 1.08997 * 110.37184 * 274.67454 * 20 19 17 36 36 H 1.09005 * 110.36567 * 37.00093 * 20 19 17 37 37 H 1.09003 * 111.00741 * 155.08939 * 21 20 19 38 38 H 1.09001 * 111.00559 * 278.89440 * 21 20 19 39 39 H 1.09003 * 110.72246 * 206.13883 * 22 21 20 40 40 H 1.08998 * 110.71910 * 82.85801 * 22 21 20 41 41 H 1.08998 * 115.55146 * 29.38021 * 25 23 19 42 42 H 1.08995 * 117.49892 * 359.97438 * 26 25 23 43 43 H 1.08999 * 117.49722 * 145.02446 * 26 25 23 44 44 H 1.09004 * 117.50407 * 214.98083 * 27 25 23 45 45 H 1.08999 * 117.49887 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.2418 -4.6225 0.8943 12 6 3.2605 -5.4426 0.5507 13 6 3.8691 -4.9149 -0.6000 14 7 4.9632 -5.4651 -1.2771 15 6 5.5279 -6.6047 -0.8313 16 8 5.0872 -7.1542 0.1572 17 6 6.6959 -7.1916 -1.5537 18 8 7.1368 -6.6419 -2.5418 19 7 7.2603 -8.3315 -1.1083 20 6 6.7619 -9.1589 0.0055 21 6 7.3212 -10.5765 -0.2725 22 6 8.7239 -10.2503 -0.8500 23 6 8.4746 -8.9562 -1.6530 24 1 8.3275 -9.1960 -2.7061 25 6 9.6642 -8.0076 -1.4935 26 6 10.3324 -7.4917 -2.7696 27 6 11.0439 -8.5303 -1.8988 28 7 3.2352 -3.8126 -0.9260 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6245 -2.5570 0.8896 32 1 1.5772 -4.7525 1.7356 33 1 3.5540 -6.3435 1.0689 34 1 5.3156 -5.0258 -2.0669 35 1 7.1389 -8.7821 0.9563 36 1 5.6720 -9.1748 0.0081 37 1 7.4025 -11.1522 0.6495 38 1 6.7086 -11.1014 -1.0055 39 1 9.0668 -11.0509 -1.5054 40 1 9.4399 -10.0742 -0.0473 41 1 9.6134 -7.3287 -0.6423 42 1 9.9247 -7.8284 -3.7227 43 1 10.7216 -6.4736 -2.7576 44 1 11.9008 -8.1951 -1.3144 45 1 11.1041 -9.5502 -2.2786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371900687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:51 Heat of formation + Delta-G solvation = 52.376889 kcal Electronic energy + Delta-G solvation = -27855.138145 eV Core-core repulsion = 23875.985784 eV Total energy + Delta-G solvation = -3979.152361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21714 -40.44760 -39.14248 -37.88778 -36.58425 -34.93255 -33.37735 -31.96247 -31.03772 -29.41713 -29.32636 -27.07729 -25.72704 -23.75431 -22.82726 -22.71977 -21.91327 -21.42110 -20.51652 -19.86281 -19.34429 -17.79873 -17.22837 -16.65170 -16.55044 -16.49317 -15.74922 -15.48317 -15.18661 -14.80616 -14.44028 -14.32854 -14.09556 -13.89476 -13.64232 -13.33425 -13.04303 -12.87193 -12.54968 -12.41222 -12.28851 -11.95975 -11.86914 -11.68336 -11.66804 -11.23778 -11.11939 -11.05411 -10.85758 -10.70683 -10.53658 -10.27397 -10.24582 -10.01265 -9.55716 -9.44359 -9.04176 -8.64484 -8.22829 -7.57917 -6.25942 -4.31204 1.23846 1.98061 2.66670 3.03807 3.05734 3.25652 3.28840 3.33748 3.47561 3.66782 3.76946 4.14786 4.24095 4.30256 4.32040 4.40965 4.66680 4.69471 4.74565 4.86670 5.06748 5.09367 5.16559 5.34489 5.36521 5.42269 5.47964 5.56154 5.60095 5.66775 5.72358 5.77192 5.85212 5.88278 5.96156 6.11419 6.34952 6.42734 6.79254 6.97385 7.01825 7.24266 7.31241 7.61778 7.69210 7.85233 7.97263 7.98186 8.54238 8.77151 9.34649 10.82833 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002325 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.594090 B =12040.351418 C =13076.390672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.285 4.285 13 C 0.251 3.749 14 N -0.599 5.599 15 C 0.515 3.485 16 O -0.496 6.496 17 C 0.529 3.471 18 O -0.509 6.509 19 N -0.587 5.587 20 C 0.099 3.901 21 C -0.137 4.137 22 C -0.125 4.125 23 C 0.169 3.831 24 H 0.081 0.919 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.175 4.175 28 N -0.295 5.295 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.423 0.577 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.202 -22.642 -0.483 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.317 4.317 13 C -0.001 4.001 14 N -0.247 5.247 15 C 0.295 3.705 16 O -0.370 6.370 17 C 0.312 3.688 18 O -0.384 6.384 19 N -0.322 5.322 20 C -0.023 4.023 21 C -0.175 4.175 22 C -0.163 4.163 23 C 0.066 3.934 24 H 0.099 0.901 25 C -0.182 4.182 26 C -0.200 4.200 27 C -0.213 4.213 28 N -0.126 5.126 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.754 -21.463 -1.168 27.253 hybrid contribution 0.557 0.680 0.236 0.910 sum 17.311 -20.783 -0.933 27.064 Atomic orbital electron populations 1.69904 1.06038 1.27793 1.49574 1.24936 0.94994 0.99560 0.94517 0.86377 0.79384 0.81720 0.78980 1.19876 1.21020 1.20034 1.21209 0.93983 0.89349 1.52352 0.91314 1.19790 0.85556 0.81219 0.99409 1.49168 1.22789 1.19667 1.18051 1.22581 1.00230 0.90162 0.96729 1.21506 1.02162 1.06491 1.01496 1.19012 0.91462 0.94693 0.94976 1.41994 1.28835 1.23741 1.30151 1.19860 0.84196 0.81353 0.85136 1.90668 1.61956 1.59545 1.24797 1.19538 0.83888 0.80818 0.84598 1.90793 1.62920 1.59934 1.24706 1.48234 1.26620 1.22818 1.34531 1.22637 1.01462 0.88959 0.89251 1.22878 0.96034 0.96453 1.02184 1.22699 0.97856 0.95562 1.00151 1.21247 0.82428 0.91369 0.98388 0.90065 1.22560 0.92847 1.02469 1.00319 1.22960 1.03124 0.99033 0.94919 1.22970 0.94709 0.99436 1.04140 1.77411 1.03274 1.15731 1.16193 0.92231 0.93559 0.92393 0.81258 0.82164 0.74003 0.90589 0.88291 0.89397 0.90452 0.89830 0.89878 0.87729 0.88604 0.88814 0.88727 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.26 6.48 6.26 -5.19 -0.03 6.44 16 10 N -0.31 -7.22 3.67 -62.56 -0.23 -7.45 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.42 9.60 -39.82 -0.38 -5.80 16 13 C 0.25 5.04 8.10 -154.56 -1.25 3.79 16 14 N -0.60 -10.01 5.43 -11.58 -0.06 -10.08 16 15 C 0.51 7.75 7.82 -11.63 -0.09 7.66 16 16 O -0.50 -7.74 11.04 5.47 0.06 -7.68 16 17 C 0.53 7.09 7.66 -11.64 -0.09 7.00 16 18 O -0.51 -7.67 16.46 5.48 0.09 -7.58 16 19 N -0.59 -6.20 3.06 -163.56 -0.50 -6.70 16 20 C 0.10 0.85 5.88 -2.53 -0.01 0.84 16 21 C -0.14 -0.77 7.08 -24.58 -0.17 -0.94 16 22 C -0.12 -0.68 6.06 -24.89 -0.15 -0.83 16 23 C 0.17 1.41 3.06 -66.96 -0.20 1.21 16 24 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 25 C -0.16 -1.42 4.72 -90.62 -0.43 -1.84 16 26 C -0.16 -1.42 10.19 -26.69 -0.27 -1.69 16 27 C -0.18 -1.16 9.84 -26.69 -0.26 -1.42 16 28 N -0.29 -6.81 12.42 31.41 0.39 -6.42 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.16 2.83 5.91 -52.49 -0.31 2.52 16 34 H 0.42 6.56 8.29 -40.82 -0.34 6.22 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.97 6.50 -51.93 -0.34 0.64 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.51 8.11 -51.93 -0.42 0.08 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -31.61 378.62 -9.21 -40.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.41 Total: 5.62 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.97 Total: 1.84 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.33 Total: -55.14 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.15 Total: -15.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.61 -9.21 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371900687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.197 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds