Wall clock time and date at job start Tue Mar 31 2020 16:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48497 * 109.47362 * 240.00150 * 3 2 1 5 5 H 1.48497 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46902 * 120.00418 * 3 2 1 7 7 C 1.37871 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00685 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34983 * 125.96957 * 125.00332 * 10 9 7 12 12 C 1.35221 * 107.87774 * 180.02562 * 11 10 9 13 13 C 1.40464 * 107.86285 * 359.97438 * 12 11 10 14 14 N 1.39928 * 125.97718 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00072 * 359.97438 * 14 13 12 16 16 O 1.21377 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.49348 * 119.99881 * 180.02562 * 15 14 13 18 18 O 1.21365 * 119.99875 * 0.02562 * 17 15 14 19 19 N 1.34770 * 120.00174 * 180.02562 * 17 15 14 20 20 C 1.47427 * 125.64665 * 5.34201 * 19 17 15 21 21 C 1.54909 * 104.83140 * 155.83735 * 20 19 17 22 22 C 1.55156 * 101.58423 * 37.01279 * 21 20 19 23 23 C 1.47017 * 125.65046 * 185.30607 * 19 17 15 24 24 H 1.09003 * 109.88035 * 300.50578 * 23 19 17 25 25 C 1.52990 * 109.88587 * 61.67558 * 23 19 17 26 26 C 1.53004 * 117.49898 * 243.71559 * 25 23 19 27 27 C 1.53000 * 117.50200 * 175.05204 * 25 23 19 28 28 N 1.31267 * 108.03935 * 0.26466 * 13 12 11 29 29 H 0.97004 * 120.00143 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.47035 * 59.99899 * 9 7 2 31 31 H 1.08999 * 109.47053 * 300.00873 * 9 7 2 32 32 H 1.08001 * 126.06744 * 0.02562 * 11 10 9 33 33 H 1.07991 * 126.06910 * 179.97438 * 12 11 10 34 34 H 0.97003 * 119.99908 * 180.02562 * 14 13 12 35 35 H 1.08997 * 110.37184 * 274.67454 * 20 19 17 36 36 H 1.09005 * 110.36567 * 37.00093 * 20 19 17 37 37 H 1.09003 * 111.00741 * 155.08939 * 21 20 19 38 38 H 1.09001 * 111.00559 * 278.89440 * 21 20 19 39 39 H 1.09003 * 110.72246 * 206.13883 * 22 21 20 40 40 H 1.08998 * 110.71910 * 82.85801 * 22 21 20 41 41 H 1.08998 * 115.55146 * 29.38021 * 25 23 19 42 42 H 1.08995 * 117.49892 * 359.97438 * 26 25 23 43 43 H 1.08999 * 117.49722 * 145.02446 * 26 25 23 44 44 H 1.09004 * 117.50407 * 214.98083 * 27 25 23 45 45 H 1.08999 * 117.49887 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.2418 -4.6225 0.8943 12 6 3.2605 -5.4426 0.5507 13 6 3.8691 -4.9149 -0.6000 14 7 4.9632 -5.4651 -1.2771 15 6 5.5279 -6.6047 -0.8313 16 8 5.0872 -7.1542 0.1572 17 6 6.6959 -7.1916 -1.5537 18 8 7.1368 -6.6419 -2.5418 19 7 7.2603 -8.3315 -1.1083 20 6 6.7619 -9.1589 0.0055 21 6 7.3212 -10.5765 -0.2725 22 6 8.7239 -10.2503 -0.8500 23 6 8.4746 -8.9562 -1.6530 24 1 8.3275 -9.1960 -2.7061 25 6 9.6642 -8.0076 -1.4935 26 6 10.3324 -7.4917 -2.7696 27 6 11.0439 -8.5303 -1.8988 28 7 3.2352 -3.8126 -0.9260 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8904 31 1 0.6245 -2.5570 0.8896 32 1 1.5772 -4.7525 1.7356 33 1 3.5540 -6.3435 1.0689 34 1 5.3156 -5.0258 -2.0669 35 1 7.1389 -8.7821 0.9563 36 1 5.6720 -9.1748 0.0081 37 1 7.4025 -11.1522 0.6495 38 1 6.7086 -11.1014 -1.0055 39 1 9.0668 -11.0509 -1.5054 40 1 9.4399 -10.0742 -0.0473 41 1 9.6134 -7.3287 -0.6423 42 1 9.9247 -7.8284 -3.7227 43 1 10.7216 -6.4736 -2.7576 44 1 11.9008 -8.1951 -1.3144 45 1 11.1041 -9.5502 -2.2786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371900687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:50 Heat of formation + Delta-G solvation = 33.536519 kcal Electronic energy + Delta-G solvation = -27855.955125 eV Core-core repulsion = 23875.985784 eV Total energy + Delta-G solvation = -3979.969341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49970 -41.72622 -40.21967 -38.90634 -37.29689 -36.35803 -35.31651 -32.85021 -32.71244 -31.03254 -29.97858 -28.83673 -26.96319 -25.09230 -24.12008 -23.40868 -22.80195 -22.43854 -21.77434 -21.11400 -20.39883 -18.90067 -18.69492 -18.26699 -18.02718 -17.48705 -17.03567 -16.69147 -16.33300 -16.11069 -15.87458 -15.60431 -15.07363 -14.89309 -14.69651 -14.40591 -14.23641 -14.04254 -13.88481 -13.72001 -13.59038 -13.25021 -13.00674 -12.79324 -12.63950 -12.39915 -12.32048 -12.29572 -12.15458 -11.97714 -11.66489 -11.57321 -11.44552 -11.35161 -10.86782 -10.73746 -10.62494 -9.91999 -9.82697 -9.22462 -8.34918 -6.48489 0.04283 0.80750 1.12431 1.37079 1.39072 1.47691 1.73056 1.77134 2.24266 2.31738 2.45350 2.86634 2.97376 3.11912 3.61128 3.68923 3.71059 3.90133 4.07070 4.11195 4.18901 4.21283 4.24593 4.46225 4.58331 4.63364 4.80124 4.82403 4.84423 4.87116 4.90183 4.97136 5.00425 5.02136 5.04165 5.12704 5.17647 5.26415 5.28009 5.38289 5.54583 5.74953 5.77124 5.90296 6.11189 6.24083 6.46833 6.62449 6.75332 6.95288 7.21337 8.72767 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002325 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.594090 B =12040.351418 C =13076.390672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.272 3.728 10 N -0.340 5.340 11 C 0.061 3.939 12 C -0.286 4.286 13 C 0.259 3.741 14 N -0.602 5.602 15 C 0.517 3.483 16 O -0.499 6.499 17 C 0.529 3.471 18 O -0.533 6.533 19 N -0.580 5.580 20 C 0.090 3.910 21 C -0.127 4.127 22 C -0.115 4.115 23 C 0.162 3.838 24 H 0.077 0.923 25 C -0.174 4.174 26 C -0.184 4.184 27 C -0.145 4.145 28 N -0.343 5.343 29 H 0.273 0.727 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.208 0.792 33 H 0.177 0.823 34 H 0.426 0.574 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.891 -24.754 0.536 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.153 3.847 10 N -0.122 5.122 11 C -0.088 4.088 12 C -0.317 4.317 13 C 0.005 3.995 14 N -0.252 5.252 15 C 0.298 3.702 16 O -0.372 6.372 17 C 0.311 3.689 18 O -0.410 6.410 19 N -0.313 5.313 20 C -0.031 4.031 21 C -0.165 4.165 22 C -0.152 4.152 23 C 0.060 3.940 24 H 0.095 0.905 25 C -0.194 4.194 26 C -0.221 4.221 27 C -0.182 4.182 28 N -0.174 5.174 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.465 -23.637 -0.126 29.994 hybrid contribution 0.095 1.193 -0.061 1.198 sum 18.560 -22.444 -0.187 29.124 Atomic orbital electron populations 1.69975 1.07108 1.28855 1.49774 1.25702 0.95851 1.02615 0.93882 0.85439 0.78338 0.78046 0.78857 1.20114 1.19644 1.19424 1.21365 0.93344 0.91065 1.53033 0.93086 1.19385 0.85591 0.81341 0.98375 1.48915 1.23327 1.20399 1.19549 1.23259 1.00367 0.88548 0.96597 1.21746 1.01920 1.06869 1.01139 1.19329 0.91434 0.93765 0.95012 1.42120 1.28342 1.24365 1.30351 1.20272 0.84314 0.80591 0.84997 1.90645 1.62150 1.59438 1.24948 1.19187 0.83526 0.81742 0.84444 1.90786 1.63530 1.60954 1.25704 1.48406 1.26850 1.21605 1.34424 1.22822 1.00873 0.90751 0.88672 1.22875 0.95800 0.94335 1.03451 1.22736 0.97934 0.94221 1.00350 1.21522 0.81164 0.92548 0.98767 0.90480 1.22515 0.94403 1.02906 0.99535 1.22971 1.04627 0.99458 0.95019 1.23057 0.93448 0.99697 1.02031 1.77324 1.04622 1.17764 1.17706 0.91782 0.95952 0.91856 0.77540 0.80561 0.73619 0.90398 0.89641 0.87088 0.90027 0.87449 0.88935 0.89417 0.89062 0.89863 0.87780 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.09 13.29 21.44 0.28 -51.80 16 2 C 0.02 1.12 5.46 84.65 0.46 1.58 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.21 9.23 25.60 0.24 -30.97 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.27 14.04 6.26 85.63 0.54 14.57 16 10 N -0.34 -15.87 3.67 -351.84 -1.29 -17.17 16 11 C 0.06 2.30 11.43 83.51 0.95 3.26 16 12 C -0.29 -10.66 9.60 22.12 0.21 -10.45 16 13 C 0.26 10.50 8.10 133.41 1.08 11.59 16 14 N -0.60 -20.53 5.43 -308.90 -1.68 -22.21 16 15 C 0.52 15.59 7.82 87.24 0.68 16.27 16 16 O -0.50 -15.22 11.04 -3.33 -0.04 -15.25 16 17 C 0.53 14.23 7.66 87.24 0.67 14.90 16 18 O -0.53 -16.41 16.46 -3.29 -0.05 -16.46 16 19 N -0.58 -11.70 3.06 -789.74 -2.42 -14.12 16 20 C 0.09 1.40 5.88 86.85 0.51 1.91 16 21 C -0.13 -1.01 7.08 31.99 0.23 -0.78 16 22 C -0.11 -0.85 6.06 31.79 0.19 -0.65 16 23 C 0.16 2.44 3.06 45.34 0.14 2.58 16 24 H 0.08 1.26 7.91 -2.39 -0.02 1.24 16 25 C -0.17 -2.84 4.72 -10.80 -0.05 -2.89 16 26 C -0.18 -3.12 10.19 30.62 0.31 -2.81 16 27 C -0.15 -1.57 9.84 30.62 0.30 -1.27 16 28 N -0.34 -16.32 12.42 -54.54 -0.68 -17.00 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.02 1.24 8.14 -2.38 -0.02 1.23 16 31 H 0.06 3.15 8.07 -2.39 -0.02 3.13 16 32 H 0.21 5.95 8.06 -2.91 -0.02 5.93 16 33 H 0.18 5.96 5.91 -2.92 -0.02 5.94 16 34 H 0.43 13.77 8.29 -92.71 -0.77 13.00 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.58 6.50 -2.38 -0.02 1.57 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.09 0.57 7.85 -2.39 -0.02 0.55 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.60 8.05 -2.39 -0.02 1.59 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.12 0.80 8.11 -2.39 -0.02 0.78 16 Total: -1.00 -69.58 378.62 2.87 -66.71 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.25 Total: 24.38 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.46 Total: 16.84 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.78 Total: -122.30 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.09 Total: -31.72 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.58 2.87 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371900687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.251 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds