Wall clock time and date at job start Tue Mar 31 2020 16:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 119.61604 * 2 1 4 4 C 1.38632 * 119.15817 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.42098 * 359.97438 * 4 3 2 6 6 C 1.38182 * 119.16077 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.61442 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.87414 * 4.56115 * 7 6 5 9 9 C 1.54316 * 109.88408 * 125.73909 * 7 6 5 10 10 C 1.55160 * 102.94268 * 141.60946 * 9 7 6 11 11 C 1.54910 * 101.58122 * 324.49825 * 10 9 7 12 12 N 1.47026 * 109.88038 * 243.55017 * 7 6 5 13 13 C 1.34771 * 125.65100 * 61.37441 * 12 7 6 14 14 O 1.21587 * 120.00199 * 0.02562 * 13 12 7 15 15 N 1.34778 * 120.00238 * 179.97438 * 13 12 7 16 16 C 1.46495 * 120.00121 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47015 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00224 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00041 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00399 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99381 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00364 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99912 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47085 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47084 * 120.00335 * 24 22 20 27 27 H 1.48497 * 109.47307 * 240.00327 * 24 22 20 28 28 N 1.31854 * 119.61848 * 180.28982 * 2 1 3 29 29 H 1.09004 * 109.47209 * 89.99943 * 1 2 3 30 30 H 1.08995 * 109.47284 * 210.00801 * 1 2 3 31 31 H 1.09010 * 109.46949 * 330.00529 * 1 2 3 32 32 H 1.07997 * 120.42366 * 0.03784 * 3 2 1 33 33 H 1.08004 * 120.79311 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.41513 * 180.02562 * 5 4 3 35 35 H 1.08997 * 110.72381 * 259.97204 * 9 7 6 36 36 H 1.09003 * 110.72277 * 23.06927 * 9 7 6 37 37 H 1.08991 * 111.00600 * 82.57442 * 10 9 7 38 38 H 1.09002 * 111.00329 * 206.42655 * 10 9 7 39 39 H 1.09001 * 110.36852 * 278.17238 * 11 10 9 40 40 H 1.08998 * 110.36449 * 155.84885 * 11 10 9 41 41 H 0.97000 * 119.99585 * 0.02562 * 15 13 12 42 42 H 1.08997 * 109.47303 * 300.00346 * 16 15 13 43 43 H 1.09001 * 109.46971 * 60.00409 * 16 15 13 44 44 H 0.97003 * 120.00149 * 359.97438 * 19 17 16 45 45 H 0.96999 * 120.00179 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0005 6 6 3.4765 -1.1948 0.0006 7 6 4.1726 -2.5314 0.0012 8 1 5.2502 -2.3880 0.0822 9 6 3.6637 -3.3876 1.1799 10 6 3.5964 -4.8129 0.5704 11 6 3.1570 -4.5089 -0.8836 12 7 3.8568 -3.2601 -1.2361 13 6 4.1528 -2.8514 -2.4858 14 8 4.7310 -1.7960 -2.6593 15 7 3.8089 -3.6131 -3.5431 16 6 4.1302 -3.1686 -4.9015 17 6 3.6412 -4.1920 -5.8938 18 8 3.0792 -5.1939 -5.5046 19 7 3.8284 -3.9941 -7.2137 20 6 3.3841 -4.9253 -8.1165 21 1 2.8837 -5.8174 -7.7699 22 6 3.5766 -4.7210 -9.4773 23 7 4.1850 -3.6352 -9.8990 24 14 2.9718 -5.9902 -10.7072 25 1 2.3253 -7.1133 -9.9820 26 1 1.9872 -5.3613 -11.6238 27 1 4.1217 -6.5047 -11.4935 28 7 2.1587 -1.1462 -0.0058 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6508 2.1373 0.0006 33 1 4.1367 2.1139 -0.0010 34 1 5.3057 -0.0804 -0.0005 35 1 4.3679 -3.3567 2.0113 36 1 2.6763 -3.0551 1.5001 37 1 4.5746 -5.2931 0.5907 38 1 2.8529 -5.4226 1.0838 39 1 2.0776 -4.3654 -0.9317 40 1 3.4632 -5.3161 -1.5490 41 1 3.3480 -4.4553 -3.4047 42 1 3.6432 -2.2130 -5.0959 43 1 5.2095 -3.0531 -5.0003 44 1 4.2775 -3.1926 -7.5251 45 1 4.3198 -3.4926 -10.8490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377028393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:41 Heat of formation + Delta-G solvation = -27.659152 kcal Electronic energy + Delta-G solvation = -28232.929821 eV Core-core repulsion = 24250.306837 eV Total energy + Delta-G solvation = -3982.622984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83365 -39.68236 -38.35646 -37.31037 -34.41566 -33.72340 -33.17915 -32.54632 -31.59797 -31.28121 -29.31600 -27.41350 -27.26434 -24.66040 -23.89968 -22.60195 -22.05012 -21.15624 -19.61633 -19.49935 -18.32663 -17.81475 -16.85063 -16.38091 -16.12275 -15.75410 -15.44768 -15.07655 -14.85489 -14.59969 -14.52940 -14.12924 -13.92939 -13.66141 -13.55541 -13.28241 -13.14935 -12.93553 -12.68876 -12.40166 -12.30575 -12.12019 -12.08453 -11.79166 -11.61295 -11.43411 -11.35102 -11.12734 -10.95412 -10.39440 -10.30700 -9.96948 -9.84745 -9.62598 -9.50599 -8.89088 -8.84185 -8.59615 -8.37726 -8.07563 -6.49352 -3.91227 1.01169 1.24393 2.73168 3.11620 3.23557 3.30445 3.42985 3.69900 3.77826 4.01798 4.09105 4.27097 4.42591 4.49297 4.59616 4.67280 4.88587 4.94003 4.98206 5.09824 5.14857 5.19464 5.29801 5.36500 5.45466 5.48057 5.54838 5.55423 5.63451 5.71217 5.79152 5.89933 5.92331 6.04069 6.04448 6.10617 6.11621 6.14926 6.28860 6.64632 6.82128 7.23773 7.48232 7.95026 7.98093 8.24405 8.47785 8.85741 9.06995 9.42079 9.90057 10.67735 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.002583 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.429057 B =10836.126526 C =11515.733483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.123 3.877 3 C -0.175 4.175 4 C -0.075 4.075 5 C -0.148 4.148 6 C 0.129 3.871 7 C 0.210 3.790 8 H 0.088 0.912 9 C -0.121 4.121 10 C -0.128 4.128 11 C 0.100 3.900 12 N -0.625 5.625 13 C 0.724 3.276 14 O -0.592 6.592 15 N -0.722 5.722 16 C 0.130 3.870 17 C 0.430 3.570 18 O -0.597 6.597 19 N -0.550 5.550 20 C -0.303 4.303 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.468 5.468 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.406 0.594 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 6.492 23.621 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.015 4.015 3 C -0.195 4.195 4 C -0.101 4.101 5 C -0.168 4.168 6 C -0.010 4.010 7 C 0.105 3.895 8 H 0.106 0.894 9 C -0.160 4.160 10 C -0.166 4.166 11 C -0.023 4.023 12 N -0.363 5.363 13 C 0.425 3.575 14 O -0.471 6.471 15 N -0.380 5.380 16 C 0.001 3.999 17 C 0.216 3.784 18 O -0.483 6.483 19 N -0.185 5.185 20 C -0.433 4.433 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 N -0.178 5.178 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.244 0.756 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.199 5.891 23.386 24.217 hybrid contribution 0.322 0.514 -1.069 1.229 sum -1.876 6.405 22.318 23.294 Atomic orbital electron populations 1.20684 0.88989 1.03097 1.03118 1.21238 0.96872 0.88309 0.95115 1.21910 0.95008 0.99153 1.03409 1.21528 0.94443 0.98227 0.95856 1.21873 1.01362 0.92781 1.00813 1.21340 0.89572 0.95249 0.94842 1.20202 0.97775 0.87274 0.84282 0.89438 1.22686 1.02942 0.94414 0.95910 1.22732 1.02468 0.96547 0.94833 1.22299 0.97389 0.86286 0.96299 1.47442 1.62432 1.22871 1.03560 1.15339 0.79556 0.83320 0.79238 1.90896 1.48249 1.23649 1.84311 1.44773 1.63468 1.25472 1.04250 1.20767 1.01101 0.97409 0.80607 1.19758 0.86260 0.88673 0.83724 1.90487 1.48320 1.30817 1.78725 1.41792 1.50889 1.21855 1.03971 1.19776 1.35136 1.02213 0.86158 0.87647 1.25323 0.96901 0.97573 0.97982 1.69627 1.41561 1.25995 1.16362 0.85760 0.78390 0.80151 0.79801 1.19134 1.20637 1.20625 1.67179 1.09301 1.29291 1.12050 0.90484 0.90599 0.90955 0.85145 0.84971 0.84973 0.90021 0.89440 0.90470 0.89645 0.91089 0.90509 0.75563 0.90243 0.90057 0.77044 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.17 36.01 0.37 -0.55 16 2 C 0.12 1.47 6.78 -82.59 -0.56 0.91 16 3 C -0.17 -1.86 9.74 -39.44 -0.38 -2.24 16 4 C -0.07 -0.81 10.18 -39.27 -0.40 -1.21 16 5 C -0.15 -1.82 9.72 -39.44 -0.38 -2.20 16 6 C 0.13 1.72 4.97 -82.59 -0.41 1.31 16 7 C 0.21 2.53 3.16 -68.11 -0.22 2.31 16 8 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 9 C -0.12 -1.06 6.43 -24.90 -0.16 -1.22 16 10 C -0.13 -1.04 7.09 -24.58 -0.17 -1.21 16 11 C 0.10 1.14 6.57 -2.53 -0.02 1.12 16 12 N -0.62 -8.90 3.06 -170.00 -0.52 -9.42 16 13 C 0.72 13.03 8.28 -86.92 -0.72 12.32 16 14 O -0.59 -12.20 16.17 5.29 0.09 -12.11 16 15 N -0.72 -13.34 5.49 -66.42 -0.36 -13.70 16 16 C 0.13 2.56 6.15 -5.20 -0.03 2.53 16 17 C 0.43 10.20 7.85 -10.99 -0.09 10.12 16 18 O -0.60 -15.65 15.24 5.55 0.08 -15.57 16 19 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 N -0.47 -6.39 9.48 -5.74 -0.05 -6.45 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.48 8.08 -51.92 -0.42 0.06 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.44 7.96 -52.48 -0.42 1.02 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.83 7.33 -51.93 -0.38 0.45 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 41 H 0.41 7.39 5.92 -40.82 -0.24 7.15 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.40 9.69 7.90 -40.82 -0.32 9.36 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -33.93 380.02 -9.12 -43.06 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -6.31 Total: 16.20 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -3.42 Total: 14.04 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.27 Total: -67.07 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: 0.17 Total: -27.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.93 -9.12 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.396 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds