Wall clock time and date at job start Tue Mar 31 2020 16:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 119.61604 * 2 1 4 4 C 1.38632 * 119.15817 * 180.02562 * 3 2 1 5 5 C 1.38674 * 118.42098 * 359.97438 * 4 3 2 6 6 C 1.38182 * 119.16077 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.61442 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.87414 * 4.56115 * 7 6 5 9 9 C 1.54316 * 109.88408 * 125.73909 * 7 6 5 10 10 C 1.55160 * 102.94268 * 141.60946 * 9 7 6 11 11 C 1.54910 * 101.58122 * 324.49825 * 10 9 7 12 12 N 1.47026 * 109.88038 * 243.55017 * 7 6 5 13 13 C 1.34771 * 125.65100 * 61.37441 * 12 7 6 14 14 O 1.21587 * 120.00199 * 0.02562 * 13 12 7 15 15 N 1.34778 * 120.00238 * 179.97438 * 13 12 7 16 16 C 1.46495 * 120.00121 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47015 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00224 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00041 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00399 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99381 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00364 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99912 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47085 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47084 * 120.00335 * 24 22 20 27 27 H 1.48497 * 109.47307 * 240.00327 * 24 22 20 28 28 N 1.31854 * 119.61848 * 180.28982 * 2 1 3 29 29 H 1.09004 * 109.47209 * 89.99943 * 1 2 3 30 30 H 1.08995 * 109.47284 * 210.00801 * 1 2 3 31 31 H 1.09010 * 109.46949 * 330.00529 * 1 2 3 32 32 H 1.07997 * 120.42366 * 0.03784 * 3 2 1 33 33 H 1.08004 * 120.79311 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.41513 * 180.02562 * 5 4 3 35 35 H 1.08997 * 110.72381 * 259.97204 * 9 7 6 36 36 H 1.09003 * 110.72277 * 23.06927 * 9 7 6 37 37 H 1.08991 * 111.00600 * 82.57442 * 10 9 7 38 38 H 1.09002 * 111.00329 * 206.42655 * 10 9 7 39 39 H 1.09001 * 110.36852 * 278.17238 * 11 10 9 40 40 H 1.08998 * 110.36449 * 155.84885 * 11 10 9 41 41 H 0.97000 * 119.99585 * 0.02562 * 15 13 12 42 42 H 1.08997 * 109.47303 * 300.00346 * 16 15 13 43 43 H 1.09001 * 109.46971 * 60.00409 * 16 15 13 44 44 H 0.97003 * 120.00149 * 359.97438 * 19 17 16 45 45 H 0.96999 * 120.00179 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0005 6 6 3.4765 -1.1948 0.0006 7 6 4.1726 -2.5314 0.0012 8 1 5.2502 -2.3880 0.0822 9 6 3.6637 -3.3876 1.1799 10 6 3.5964 -4.8129 0.5704 11 6 3.1570 -4.5089 -0.8836 12 7 3.8568 -3.2601 -1.2361 13 6 4.1528 -2.8514 -2.4858 14 8 4.7310 -1.7960 -2.6593 15 7 3.8089 -3.6131 -3.5431 16 6 4.1302 -3.1686 -4.9015 17 6 3.6412 -4.1920 -5.8938 18 8 3.0792 -5.1939 -5.5046 19 7 3.8284 -3.9941 -7.2137 20 6 3.3841 -4.9253 -8.1165 21 1 2.8837 -5.8174 -7.7699 22 6 3.5766 -4.7210 -9.4773 23 7 4.1850 -3.6352 -9.8990 24 14 2.9718 -5.9902 -10.7072 25 1 2.3253 -7.1133 -9.9820 26 1 1.9872 -5.3613 -11.6238 27 1 4.1217 -6.5047 -11.4935 28 7 2.1587 -1.1462 -0.0058 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6508 2.1373 0.0006 33 1 4.1367 2.1139 -0.0010 34 1 5.3057 -0.0804 -0.0005 35 1 4.3679 -3.3567 2.0113 36 1 2.6763 -3.0551 1.5001 37 1 4.5746 -5.2931 0.5907 38 1 2.8529 -5.4226 1.0838 39 1 2.0776 -4.3654 -0.9317 40 1 3.4632 -5.3161 -1.5490 41 1 3.3480 -4.4553 -3.4047 42 1 3.6432 -2.2130 -5.0959 43 1 5.2095 -3.0531 -5.0003 44 1 4.2775 -3.1926 -7.5251 45 1 4.3198 -3.4926 -10.8490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377028393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:41 Heat of formation + Delta-G solvation = -50.969991 kcal Electronic energy + Delta-G solvation = -28233.940655 eV Core-core repulsion = 24250.306837 eV Total energy + Delta-G solvation = -3983.633818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85407 -40.90004 -40.09126 -38.50873 -36.26839 -35.36655 -34.08019 -33.47758 -33.36143 -32.55006 -30.19307 -29.02766 -28.08970 -26.48116 -24.96322 -23.53654 -22.95097 -22.05230 -21.35992 -20.84387 -20.11534 -19.33145 -17.83026 -17.58047 -17.21634 -17.07180 -16.89864 -16.53216 -16.47068 -16.01973 -15.57607 -15.44223 -15.37881 -15.19573 -14.42881 -14.23542 -14.18682 -13.95226 -13.91188 -13.64981 -13.55818 -13.40773 -13.12303 -13.02518 -12.92241 -12.85473 -12.46211 -12.19474 -12.14722 -12.11412 -11.66551 -11.59766 -11.38405 -10.73118 -10.58919 -10.42819 -10.30047 -10.11373 -9.77793 -9.53286 -8.52519 -6.02999 0.13045 0.38011 1.33952 1.41145 1.48868 1.57807 1.86472 2.06745 2.26932 2.73695 2.97250 3.14345 3.15392 3.20019 3.60573 3.69014 3.78402 3.91403 4.13948 4.17894 4.21512 4.26967 4.31513 4.36821 4.39922 4.53729 4.60994 4.66297 4.74249 4.75445 4.80331 4.91993 4.97889 5.09082 5.16681 5.24235 5.27667 5.28105 5.29082 5.37342 5.39120 5.82052 5.90279 5.97723 6.45730 6.88392 7.01536 7.09139 7.38876 7.48129 7.91566 8.64749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.002583 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.429057 B =10836.126526 C =11515.733483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.101 3.899 3 C -0.176 4.176 4 C -0.080 4.080 5 C -0.166 4.166 6 C 0.108 3.892 7 C 0.200 3.800 8 H 0.090 0.910 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.092 3.908 12 N -0.621 5.621 13 C 0.719 3.281 14 O -0.623 6.623 15 N -0.724 5.724 16 C 0.144 3.856 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.558 5.558 20 C -0.337 4.337 21 H 0.086 0.914 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.270 1.270 28 N -0.491 5.491 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.407 0.593 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.398 0.602 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 6.683 24.621 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.037 4.037 3 C -0.196 4.196 4 C -0.105 4.105 5 C -0.187 4.187 6 C -0.030 4.030 7 C 0.096 3.904 8 H 0.108 0.892 9 C -0.148 4.148 10 C -0.152 4.152 11 C -0.030 4.030 12 N -0.358 5.358 13 C 0.421 3.579 14 O -0.504 6.504 15 N -0.382 5.382 16 C 0.016 3.984 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.193 5.193 20 C -0.466 4.466 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.195 1.195 28 N -0.202 5.202 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.245 0.755 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.233 0.767 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.462 6.084 24.433 25.299 hybrid contribution 0.389 0.518 -1.316 1.467 sum -2.073 6.601 23.117 24.130 Atomic orbital electron populations 1.20729 0.87265 1.04371 1.03103 1.21810 0.98287 0.88551 0.95050 1.22274 0.95173 0.99915 1.02222 1.21919 0.94941 0.98777 0.94896 1.22106 1.01858 0.93362 1.01348 1.21546 0.89836 0.95988 0.95663 1.20518 0.98053 0.87585 0.84280 0.89236 1.22666 1.03082 0.93802 0.95275 1.22736 1.03692 0.96539 0.92255 1.22514 0.96895 0.85008 0.98619 1.47534 1.61474 1.23858 1.02942 1.15472 0.79470 0.82880 0.80117 1.90860 1.49682 1.24822 1.85033 1.44723 1.63876 1.25673 1.03959 1.20550 1.01510 0.95999 0.80378 1.20333 0.85000 0.88781 0.83765 1.90461 1.49242 1.32192 1.79197 1.41830 1.51313 1.21779 1.04417 1.19781 1.36859 1.02594 0.87349 0.89558 1.26153 0.96460 0.99424 0.99102 1.69691 1.41652 1.27097 1.17186 0.84795 0.78198 0.77580 0.77296 1.19383 1.19604 1.19521 1.67185 1.09599 1.30410 1.12965 0.90987 0.90806 0.88259 0.82271 0.82349 0.84427 0.87360 0.90185 0.89331 0.87326 0.91663 0.90744 0.75473 0.89769 0.88978 0.76737 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.17 71.24 0.72 -0.92 16 2 C 0.10 2.35 6.78 42.55 0.29 2.64 16 3 C -0.18 -3.47 9.74 22.36 0.22 -3.26 16 4 C -0.08 -1.62 10.18 22.47 0.23 -1.40 16 5 C -0.17 -4.04 9.72 22.36 0.22 -3.82 16 6 C 0.11 2.86 4.97 42.54 0.21 3.07 16 7 C 0.20 4.71 3.16 44.59 0.14 4.85 16 8 H 0.09 2.02 7.89 -2.38 -0.02 2.00 16 9 C -0.11 -1.73 6.43 31.78 0.20 -1.53 16 10 C -0.11 -1.61 7.09 31.99 0.23 -1.39 16 11 C 0.09 2.03 6.57 86.86 0.57 2.60 16 12 N -0.62 -17.62 3.06 -810.03 -2.48 -20.10 16 13 C 0.72 26.14 8.28 179.06 1.48 27.62 16 14 O -0.62 -25.94 16.17 -3.99 -0.06 -26.01 16 15 N -0.72 -27.10 5.49 -482.31 -2.65 -29.74 16 16 C 0.14 5.76 6.15 85.63 0.53 6.29 16 17 C 0.43 20.97 7.85 87.66 0.69 21.65 16 18 O -0.62 -33.33 15.24 -3.06 -0.05 -33.37 16 19 N -0.56 -28.86 5.29 -306.99 -1.62 -30.49 16 20 C -0.34 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 22 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 23 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 24 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 N -0.49 -13.34 9.48 -172.08 -1.63 -14.97 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.09 8.08 -2.38 -0.02 1.07 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.14 3.01 7.96 -2.91 -0.02 2.98 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.41 7.33 -2.39 -0.02 1.40 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.67 7.30 -2.39 -0.02 1.65 16 41 H 0.41 15.08 5.92 -92.71 -0.55 14.53 16 42 H 0.08 3.30 8.14 -2.39 -0.02 3.29 16 43 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -73.62 380.02 0.58 -73.04 By element: Atomic # 1 Polarization: 48.43 SS G_CDS: -0.25 Total: 48.18 kcal Atomic # 6 Polarization: 31.25 SS G_CDS: 7.01 Total: 38.26 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -8.10 Total: -144.32 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -0.11 Total: -59.38 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.62 0.58 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.074 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds