Wall clock time and date at job start Tue Mar 31 2020 16:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38222 * 119.61795 * 2 1 4 4 C 1.38626 * 119.16438 * 179.97438 * 3 2 1 5 5 C 1.38673 * 118.41822 * 359.74423 * 4 3 2 6 6 C 1.38186 * 119.16186 * 0.49658 * 5 4 3 7 7 C 1.50698 * 119.61612 * 179.76943 * 6 5 4 8 8 H 1.08997 * 109.99821 * 245.81677 * 7 6 5 9 9 C 1.54327 * 109.87855 * 124.72900 * 7 6 5 10 10 C 1.55165 * 102.94078 * 218.38768 * 9 7 6 11 11 C 1.54915 * 101.57980 * 35.50135 * 10 9 7 12 12 N 1.47022 * 109.88394 * 6.91947 * 7 6 5 13 13 C 1.34777 * 125.64528 * 298.31742 * 12 7 6 14 14 O 1.21584 * 120.00227 * 0.02562 * 13 12 7 15 15 N 1.34779 * 119.99672 * 179.97438 * 13 12 7 16 16 C 1.46493 * 119.99917 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47119 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99875 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99533 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00210 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99426 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47196 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46864 * 119.99944 * 24 22 20 27 27 H 1.48499 * 109.47342 * 239.99913 * 24 22 20 28 28 N 1.31852 * 119.61821 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47259 * 270.02684 * 1 2 3 30 30 H 1.09006 * 109.47300 * 30.02533 * 1 2 3 31 31 H 1.09002 * 109.47246 * 150.02421 * 1 2 3 32 32 H 1.08007 * 120.41836 * 359.95137 * 3 2 1 33 33 H 1.08001 * 120.79257 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.42154 * 180.24633 * 5 4 3 35 35 H 1.08993 * 110.72079 * 336.74924 * 9 7 6 36 36 H 1.09002 * 110.72173 * 100.02761 * 9 7 6 37 37 H 1.08995 * 111.00547 * 153.57467 * 10 9 7 38 38 H 1.09001 * 111.00003 * 277.43047 * 10 9 7 39 39 H 1.08997 * 110.36462 * 204.15099 * 11 10 9 40 40 H 1.08999 * 110.46102 * 81.87572 * 11 10 9 41 41 H 0.97001 * 120.00117 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.47258 * 300.00406 * 16 15 13 43 43 H 1.08999 * 109.47432 * 60.00112 * 16 15 13 44 44 H 0.97001 * 119.99957 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99947 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.2266 -0.0342 0.0065 6 6 3.4766 -1.1947 0.0012 7 6 4.1727 -2.5313 0.0024 8 1 3.9771 -3.0543 -0.9337 9 6 3.6763 -3.3805 1.1915 10 6 4.9666 -4.0981 1.6687 11 6 6.0383 -3.0068 1.4231 12 7 5.6202 -2.3411 0.1759 13 6 6.4307 -1.6700 -0.6662 14 8 5.9747 -1.1585 -1.6705 15 7 7.7467 -1.5650 -0.3943 16 6 8.6276 -0.8351 -1.3093 17 6 10.0383 -0.8662 -0.7802 18 8 10.2836 -1.4411 0.2593 19 7 11.0273 -0.2543 -1.4615 20 6 12.3105 -0.2822 -0.9797 21 1 12.5289 -0.7941 -0.0542 22 6 13.3302 0.3482 -1.6824 23 7 13.0645 0.9707 -2.8089 24 14 15.0785 0.3108 -1.0258 25 1 15.1122 -0.4492 0.2496 26 1 15.9658 -0.3481 -2.0177 27 1 15.5476 1.6995 -0.7875 28 7 2.1586 -1.1462 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6507 2.1373 -0.0008 33 1 4.1365 2.1140 0.0001 34 1 5.3056 -0.0804 0.0111 35 1 3.2755 -2.7433 1.9797 36 1 2.9309 -4.1051 0.8635 37 1 4.9036 -4.3528 2.7266 38 1 5.1663 -4.9843 1.0662 39 1 7.0212 -3.4614 1.2994 40 1 6.0519 -2.2938 2.2475 41 1 8.1104 -1.9727 0.4071 42 1 8.5984 -1.3037 -2.2931 43 1 8.2920 0.1989 -1.3895 44 1 10.8310 0.2058 -2.2926 45 1 13.7763 1.4111 -3.2992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377028394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:47 Heat of formation + Delta-G solvation = -18.769240 kcal Electronic energy + Delta-G solvation = -28203.240613 eV Core-core repulsion = 24221.003124 eV Total energy + Delta-G solvation = -3982.237489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08737 -39.71188 -38.42726 -37.44376 -34.53071 -33.80674 -33.05519 -32.69917 -31.67861 -31.33914 -29.30208 -27.45818 -27.24576 -24.73531 -23.96655 -22.71416 -21.95954 -21.20696 -19.70348 -19.50819 -18.38474 -17.89011 -17.27681 -16.43870 -16.01138 -15.65762 -15.49966 -15.30136 -14.91892 -14.69016 -14.51851 -14.23098 -14.05764 -13.72126 -13.51970 -13.27980 -13.16470 -12.90627 -12.81098 -12.43137 -12.38820 -12.17826 -11.98782 -11.86842 -11.64815 -11.44972 -11.38763 -11.15605 -11.01469 -10.42483 -10.34446 -10.07718 -9.82469 -9.66519 -9.51269 -9.00819 -8.79265 -8.65037 -8.53651 -8.11868 -6.53169 -3.95201 1.07328 1.26933 2.53553 3.08743 3.21255 3.24200 3.27825 3.67823 3.72505 3.91312 4.09210 4.21126 4.30595 4.49850 4.59233 4.72264 4.83234 4.87152 4.99220 5.08097 5.15520 5.19681 5.25744 5.34398 5.38672 5.47829 5.51798 5.53976 5.63491 5.66390 5.73540 5.83572 5.86153 5.94657 5.96785 6.04243 6.09268 6.18914 6.32643 6.66191 6.71022 7.08373 7.44590 7.90658 7.93503 8.09395 8.43083 8.69955 9.02958 9.37556 9.85175 10.63754 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.002458 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.621656 B =11389.680929 C =12385.941425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.119 3.881 3 C -0.176 4.176 4 C -0.075 4.075 5 C -0.142 4.142 6 C 0.125 3.875 7 C 0.210 3.790 8 H 0.094 0.906 9 C -0.110 4.110 10 C -0.132 4.132 11 C 0.096 3.904 12 N -0.635 5.635 13 C 0.720 3.280 14 O -0.586 6.586 15 N -0.721 5.721 16 C 0.128 3.872 17 C 0.429 3.571 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.894 5.894 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.480 5.480 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.407 0.593 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.878 -4.182 7.257 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.019 4.019 3 C -0.196 4.196 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.013 4.013 7 C 0.105 3.895 8 H 0.112 0.888 9 C -0.149 4.149 10 C -0.170 4.170 11 C -0.027 4.027 12 N -0.375 5.375 13 C 0.422 3.578 14 O -0.464 6.464 15 N -0.379 5.379 16 C -0.001 4.001 17 C 0.214 3.786 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.534 5.534 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 N -0.191 5.191 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.261 -4.789 6.994 23.820 hybrid contribution 1.614 1.152 -0.034 1.984 sum -20.646 -3.637 6.960 22.089 Atomic orbital electron populations 1.20660 0.88955 1.03274 1.02782 1.21153 0.96716 0.88220 0.95825 1.21898 0.94935 0.99116 1.03679 1.21604 0.94394 0.98468 0.95647 1.22135 1.02239 0.92571 0.99191 1.21295 0.89322 0.95426 0.95298 1.19993 0.78135 0.91024 1.00386 0.88815 1.22562 0.97514 0.98363 0.96431 1.22807 0.94062 0.97735 1.02397 1.22347 0.99092 0.94708 0.86518 1.47589 1.07361 1.57783 1.24724 1.15309 0.80858 0.79179 0.82439 1.90972 1.75117 1.52738 1.27599 1.44838 1.05512 1.58813 1.28738 1.20812 0.88938 0.97294 0.93026 1.19735 0.86150 0.85523 0.87161 1.90490 1.83323 1.49204 1.25413 1.41797 1.07140 1.46558 1.22873 1.19774 0.82592 1.32822 1.08167 0.87618 1.25333 1.00640 0.96178 0.95620 1.69624 1.34416 1.34500 1.14890 0.85758 0.81264 0.78079 0.78985 1.19134 1.20607 1.20609 1.67115 1.08955 1.29603 1.13377 0.90691 0.90935 0.90595 0.85149 0.85009 0.84580 0.90446 0.89239 0.89528 0.90164 0.90068 0.91245 0.75431 0.89912 0.90007 0.77016 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 2 C 0.12 1.36 6.78 -82.59 -0.56 0.80 16 3 C -0.18 -1.94 9.74 -39.44 -0.38 -2.32 16 4 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 5 C -0.14 -2.07 8.06 -39.44 -0.32 -2.39 16 6 C 0.13 1.73 5.88 -82.59 -0.49 1.25 16 7 C 0.21 2.58 3.34 -68.10 -0.23 2.35 16 8 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 9 C -0.11 -0.97 6.29 -24.89 -0.16 -1.12 16 10 C -0.13 -0.99 7.09 -24.57 -0.17 -1.17 16 11 C 0.10 0.97 6.57 -2.53 -0.02 0.95 16 12 N -0.64 -8.35 2.67 -170.00 -0.45 -8.81 16 13 C 0.72 11.87 6.28 -86.92 -0.55 11.32 16 14 O -0.59 -11.36 14.63 5.29 0.08 -11.28 16 15 N -0.72 -12.19 5.49 -66.42 -0.36 -12.55 16 16 C 0.13 2.36 6.15 -5.20 -0.03 2.32 16 17 C 0.43 9.73 7.85 -10.98 -0.09 9.65 16 18 O -0.60 -15.08 15.24 5.55 0.08 -15.00 16 19 N -0.55 -13.51 5.29 -10.96 -0.06 -13.56 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 21 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 23 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 24 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 N -0.48 -6.29 9.96 -5.74 -0.06 -6.35 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.02 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 2.20 4.61 -52.49 -0.24 1.96 16 35 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.81 7.30 -51.93 -0.38 0.44 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.41 6.76 5.92 -40.82 -0.24 6.52 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -32.45 373.26 -8.88 -41.33 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -6.17 Total: 16.14 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -3.26 Total: 12.12 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.21 Total: -64.32 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: 0.16 Total: -26.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.45 -8.88 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.560 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds