Wall clock time and date at job start Tue Mar 31 2020 16:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38222 * 119.61795 * 2 1 4 4 C 1.38626 * 119.16438 * 179.97438 * 3 2 1 5 5 C 1.38673 * 118.41822 * 359.74423 * 4 3 2 6 6 C 1.38186 * 119.16186 * 0.49658 * 5 4 3 7 7 C 1.50698 * 119.61612 * 179.76943 * 6 5 4 8 8 H 1.08997 * 109.99821 * 245.81677 * 7 6 5 9 9 C 1.54327 * 109.87855 * 124.72900 * 7 6 5 10 10 C 1.55165 * 102.94078 * 218.38768 * 9 7 6 11 11 C 1.54915 * 101.57980 * 35.50135 * 10 9 7 12 12 N 1.47022 * 109.88394 * 6.91947 * 7 6 5 13 13 C 1.34777 * 125.64528 * 298.31742 * 12 7 6 14 14 O 1.21584 * 120.00227 * 0.02562 * 13 12 7 15 15 N 1.34779 * 119.99672 * 179.97438 * 13 12 7 16 16 C 1.46493 * 119.99917 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47119 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99875 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99533 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00210 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99426 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47196 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46864 * 119.99944 * 24 22 20 27 27 H 1.48499 * 109.47342 * 239.99913 * 24 22 20 28 28 N 1.31852 * 119.61821 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47259 * 270.02684 * 1 2 3 30 30 H 1.09006 * 109.47300 * 30.02533 * 1 2 3 31 31 H 1.09002 * 109.47246 * 150.02421 * 1 2 3 32 32 H 1.08007 * 120.41836 * 359.95137 * 3 2 1 33 33 H 1.08001 * 120.79257 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.42154 * 180.24633 * 5 4 3 35 35 H 1.08993 * 110.72079 * 336.74924 * 9 7 6 36 36 H 1.09002 * 110.72173 * 100.02761 * 9 7 6 37 37 H 1.08995 * 111.00547 * 153.57467 * 10 9 7 38 38 H 1.09001 * 111.00003 * 277.43047 * 10 9 7 39 39 H 1.08997 * 110.36462 * 204.15099 * 11 10 9 40 40 H 1.08999 * 110.46102 * 81.87572 * 11 10 9 41 41 H 0.97001 * 120.00117 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.47258 * 300.00406 * 16 15 13 43 43 H 1.08999 * 109.47432 * 60.00112 * 16 15 13 44 44 H 0.97001 * 119.99957 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99947 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.2266 -0.0342 0.0065 6 6 3.4766 -1.1947 0.0012 7 6 4.1727 -2.5313 0.0024 8 1 3.9771 -3.0543 -0.9337 9 6 3.6763 -3.3805 1.1915 10 6 4.9666 -4.0981 1.6687 11 6 6.0383 -3.0068 1.4231 12 7 5.6202 -2.3411 0.1759 13 6 6.4307 -1.6700 -0.6662 14 8 5.9747 -1.1585 -1.6705 15 7 7.7467 -1.5650 -0.3943 16 6 8.6276 -0.8351 -1.3093 17 6 10.0383 -0.8662 -0.7802 18 8 10.2836 -1.4411 0.2593 19 7 11.0273 -0.2543 -1.4615 20 6 12.3105 -0.2822 -0.9797 21 1 12.5289 -0.7941 -0.0542 22 6 13.3302 0.3482 -1.6824 23 7 13.0645 0.9707 -2.8089 24 14 15.0785 0.3108 -1.0258 25 1 15.1122 -0.4492 0.2496 26 1 15.9658 -0.3481 -2.0177 27 1 15.5476 1.6995 -0.7875 28 7 2.1586 -1.1462 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6507 2.1373 -0.0008 33 1 4.1365 2.1140 0.0001 34 1 5.3056 -0.0804 0.0111 35 1 3.2755 -2.7433 1.9797 36 1 2.9309 -4.1051 0.8635 37 1 4.9036 -4.3528 2.7266 38 1 5.1663 -4.9843 1.0662 39 1 7.0212 -3.4614 1.2994 40 1 6.0519 -2.2938 2.2475 41 1 8.1104 -1.9727 0.4071 42 1 8.5984 -1.3037 -2.2931 43 1 8.2920 0.1989 -1.3895 44 1 10.8310 0.2058 -2.2926 45 1 13.7763 1.4111 -3.2992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377028394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:46 Heat of formation + Delta-G solvation = -41.156380 kcal Electronic energy + Delta-G solvation = -28204.211392 eV Core-core repulsion = 24221.003124 eV Total energy + Delta-G solvation = -3983.208268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14163 -40.87036 -40.10687 -38.59468 -36.28107 -35.41992 -33.95465 -33.67315 -33.38213 -32.58627 -30.17332 -28.99640 -28.06369 -26.48620 -25.05571 -23.62577 -22.93846 -22.05626 -21.36220 -20.82507 -20.10237 -19.35318 -18.28890 -17.60483 -17.33863 -17.03121 -16.65826 -16.59954 -16.48186 -16.03132 -15.76379 -15.48631 -15.35956 -15.16704 -14.44065 -14.23278 -14.16157 -14.00852 -13.93416 -13.59230 -13.55247 -13.48326 -13.08929 -13.03253 -12.91439 -12.80281 -12.45483 -12.23461 -12.16691 -12.11517 -11.72150 -11.59053 -11.41634 -10.79199 -10.57798 -10.45949 -10.35226 -10.10928 -9.75262 -9.63853 -8.52104 -6.02304 0.13895 0.31197 1.34251 1.34377 1.43365 1.57142 1.86724 1.98530 2.26713 2.74084 2.79103 3.12304 3.15076 3.25888 3.50858 3.64983 3.80038 3.89513 4.08346 4.14995 4.18386 4.20687 4.32341 4.38757 4.41550 4.47818 4.59184 4.63302 4.74031 4.79286 4.83555 4.86252 4.91887 5.09010 5.12366 5.20158 5.22541 5.28469 5.31881 5.37842 5.37953 5.78142 5.90118 5.91049 6.46383 6.83212 6.99361 7.02320 7.37128 7.45130 7.92483 8.65056 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.002458 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.621656 B =11389.680929 C =12385.941425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.111 3.889 3 C -0.174 4.174 4 C -0.086 4.086 5 C -0.171 4.171 6 C 0.112 3.888 7 C 0.204 3.796 8 H 0.081 0.919 9 C -0.099 4.099 10 C -0.118 4.118 11 C 0.087 3.913 12 N -0.630 5.630 13 C 0.721 3.279 14 O -0.619 6.619 15 N -0.721 5.721 16 C 0.142 3.858 17 C 0.435 3.565 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.335 4.335 21 H 0.087 0.913 22 C -0.012 4.012 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.271 1.271 28 N -0.491 5.491 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.409 0.591 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.312 -4.375 8.189 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.112 4.112 5 C -0.191 4.191 6 C -0.026 4.026 7 C 0.099 3.901 8 H 0.099 0.901 9 C -0.137 4.137 10 C -0.156 4.156 11 C -0.035 4.035 12 N -0.368 5.368 13 C 0.423 3.577 14 O -0.500 6.500 15 N -0.379 5.379 16 C 0.014 3.986 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.194 5.194 20 C -0.464 4.464 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.196 1.196 28 N -0.202 5.202 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.248 0.752 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.724 -5.005 7.946 25.515 hybrid contribution 1.935 1.238 -0.313 2.318 sum -21.790 -3.767 7.633 23.393 Atomic orbital electron populations 1.20759 0.86134 1.04293 1.04093 1.21888 0.98618 0.87959 0.94309 1.22255 0.94250 1.00483 1.02370 1.21867 0.95581 0.98275 0.95498 1.22087 1.01354 0.94017 1.01639 1.21465 0.89869 0.95693 0.95567 1.20195 0.77438 0.91074 1.01441 0.90111 1.22536 0.98316 0.98050 0.94815 1.22811 0.91909 0.96693 1.04167 1.22615 1.00100 0.95550 0.85202 1.47613 1.07626 1.56659 1.24907 1.15343 0.80655 0.79183 0.82524 1.90936 1.75577 1.54179 1.29293 1.44736 1.05690 1.58970 1.28546 1.20596 0.86445 0.98269 0.93338 1.20345 0.87307 0.83844 0.86339 1.90466 1.84187 1.49890 1.26512 1.41839 1.07052 1.47298 1.23239 1.19772 0.84092 1.34251 1.08316 0.89495 1.26147 1.04138 0.95278 0.95668 1.69690 1.35775 1.34642 1.15546 0.84803 0.76462 0.78363 0.78303 1.19353 1.19668 1.19638 1.67198 1.08434 1.30583 1.14024 0.89072 0.88787 0.90719 0.81898 0.83859 0.86802 0.90573 0.87582 0.86841 0.89414 0.90132 0.90723 0.75228 0.89089 0.89092 0.76724 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.17 71.24 0.72 -0.49 16 2 C 0.11 2.35 6.78 42.55 0.29 2.64 16 3 C -0.17 -3.53 9.74 22.36 0.22 -3.31 16 4 C -0.09 -2.16 10.18 22.47 0.23 -1.93 16 5 C -0.17 -5.14 8.06 22.36 0.18 -4.96 16 6 C 0.11 3.13 5.88 42.54 0.25 3.38 16 7 C 0.20 5.00 3.34 44.60 0.15 5.15 16 8 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 9 C -0.10 -1.58 6.29 31.79 0.20 -1.38 16 10 C -0.12 -1.52 7.09 31.99 0.23 -1.29 16 11 C 0.09 1.69 6.57 86.86 0.57 2.26 16 12 N -0.63 -16.76 2.67 -810.03 -2.16 -18.92 16 13 C 0.72 24.40 6.28 179.05 1.13 25.53 16 14 O -0.62 -24.81 14.63 -3.98 -0.06 -24.87 16 15 N -0.72 -24.89 5.49 -482.30 -2.65 -27.54 16 16 C 0.14 5.34 6.15 85.64 0.53 5.87 16 17 C 0.43 20.15 7.85 87.66 0.69 20.84 16 18 O -0.62 -32.07 15.24 -3.06 -0.05 -32.11 16 19 N -0.56 -28.13 5.29 -306.97 -1.62 -29.76 16 20 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 21 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 24 Si 1.00 41.68 29.55 68.60 2.03 43.70 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 28 N -0.49 -12.53 9.96 -172.08 -1.71 -14.24 16 29 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.09 0.80 8.08 -2.38 -0.02 0.78 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.11 3.88 4.61 -2.91 -0.01 3.87 16 35 H 0.08 1.27 7.84 -2.39 -0.02 1.25 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.58 7.30 -2.39 -0.02 1.56 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.41 13.84 5.92 -92.71 -0.55 13.29 16 42 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -71.27 373.26 0.48 -70.79 By element: Atomic # 1 Polarization: 47.13 SS G_CDS: -0.24 Total: 46.89 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 6.66 Total: 34.53 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -7.86 Total: -138.93 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.10 Total: -56.98 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -71.27 0.48 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.635 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds