Wall clock time and date at job start Tue Mar 31 2020 16:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52998 * 109.46764 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47071 * 65.00136 * 4 3 2 6 6 C 1.46491 * 120.00281 * 84.00175 * 5 4 3 7 7 C 1.50706 * 109.47114 * 274.99778 * 6 5 4 8 8 H 1.07993 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99803 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99652 * 180.27782 * 9 7 6 11 11 Si 1.86802 * 120.00178 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47308 * 89.99910 * 11 9 7 13 13 H 1.48508 * 109.46491 * 209.99699 * 11 9 7 14 14 H 1.48497 * 109.47056 * 329.99051 * 11 9 7 15 15 S 1.65601 * 119.99815 * 263.99839 * 5 4 3 16 16 O 1.42103 * 106.40165 * 13.95981 * 15 5 4 17 17 O 1.42095 * 106.40260 * 146.87884 * 15 5 4 18 18 N 1.65599 * 107.22276 * 260.41995 * 15 5 4 19 19 C 1.46500 * 120.00083 * 59.88155 * 18 15 5 20 20 C 1.52999 * 109.63745 * 51.64036 * 19 18 15 21 21 C 1.53029 * 109.64359 * 291.22078 * 19 18 15 22 22 C 1.50060 * 110.14509 * 289.74899 * 21 19 18 23 23 C 1.29444 * 124.08305 * 342.87068 * 22 21 19 24 24 C 1.50078 * 124.06707 * 0.48964 * 23 22 21 25 25 C 1.53035 * 110.14395 * 342.83360 * 24 23 22 26 26 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47167 * 300.00099 * 1 2 3 28 28 H 1.08999 * 109.47369 * 59.99856 * 1 2 3 29 29 H 1.09002 * 109.47504 * 60.00164 * 3 2 1 30 30 H 1.08999 * 109.46874 * 299.99432 * 3 2 1 31 31 H 1.09000 * 109.47524 * 304.99921 * 4 3 2 32 32 H 1.09005 * 109.47140 * 184.99564 * 4 3 2 33 33 H 1.09005 * 109.47518 * 154.99918 * 6 5 4 34 34 H 1.08998 * 109.47375 * 35.00138 * 6 5 4 35 35 H 0.97003 * 120.00549 * 179.72771 * 10 9 7 36 36 H 0.97006 * 119.99835 * 239.89544 * 18 15 5 37 37 H 1.08997 * 109.47346 * 59.99874 * 20 19 18 38 38 H 1.08998 * 109.47244 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47300 * 300.00074 * 20 19 18 40 40 H 1.08999 * 109.35493 * 49.96157 * 21 19 18 41 41 H 1.08999 * 109.35581 * 169.54339 * 21 19 18 42 42 H 1.08000 * 117.95980 * 162.84513 * 22 21 19 43 43 H 1.07988 * 117.96870 * 180.47063 * 23 22 21 44 44 H 1.08995 * 109.35423 * 103.05651 * 24 23 22 45 45 H 1.09006 * 109.35428 * 222.63616 * 24 23 22 46 46 H 1.08997 * 109.65586 * 289.78045 * 25 24 23 47 47 H 1.08993 * 109.63685 * 169.14287 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1617 1.3847 -2.4501 7 6 2.8420 1.5402 -3.1610 8 1 1.9542 1.0746 -2.7594 9 6 2.7680 2.2777 -4.3236 10 7 1.6153 2.4180 -4.9410 11 14 4.3035 3.0836 -5.0179 12 1 4.9771 2.1444 -5.9502 13 1 3.9262 4.3206 -5.7481 14 1 5.2276 3.4269 -3.9073 15 16 4.2662 -1.0655 -1.3099 16 8 3.6964 -1.6172 -0.1308 17 8 3.9082 -1.4895 -2.6180 18 7 5.9035 -1.2775 -1.1814 19 6 6.6134 -0.7968 0.0066 20 6 5.9230 -1.3235 1.2663 21 6 6.6135 0.7334 0.0217 22 6 7.5057 1.2609 -1.0635 23 6 8.4047 0.5547 -1.6707 24 6 8.6732 -0.8933 -1.3815 25 6 8.0681 -1.2818 -0.0306 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8465 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0901 33 1 4.8776 0.9008 -3.1147 34 1 4.5381 2.3667 -2.1638 35 1 1.5623 2.9401 -5.7568 36 1 6.3926 -1.7198 -1.8928 37 1 5.9310 -2.4134 1.2563 38 1 6.4535 -0.9647 2.1483 39 1 4.8929 -0.9680 1.2917 40 1 5.5981 1.0964 -0.1370 41 1 6.9738 1.0851 0.9884 42 1 7.3903 2.2940 -1.3565 43 1 8.9982 1.0373 -2.4330 44 1 8.2300 -1.5065 -2.1660 45 1 9.7496 -1.0633 -1.3575 46 1 8.6324 -0.8094 0.7734 47 1 8.0963 -2.3652 0.0854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416555614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:10 Heat of formation + Delta-G solvation = -88.827789 kcal Electronic energy + Delta-G solvation = -30156.818600 eV Core-core repulsion = 26274.694345 eV Total energy + Delta-G solvation = -3882.124255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.54603 -37.58801 -36.44854 -35.52811 -34.98945 -33.86828 -32.45407 -30.83618 -30.32663 -29.54889 -27.19143 -26.51565 -25.61806 -23.29751 -22.33316 -21.65766 -20.97574 -18.93123 -17.80879 -17.21087 -17.10580 -16.59855 -16.06025 -15.95118 -15.15514 -14.96815 -14.67580 -14.57548 -14.13726 -14.05816 -13.84289 -13.41474 -13.11449 -12.75191 -12.64812 -12.56267 -12.46863 -12.29716 -12.08217 -12.01291 -11.63660 -11.56944 -11.34295 -11.20885 -11.11096 -11.06191 -10.83631 -10.72716 -10.53762 -10.46544 -10.34114 -10.15553 -9.99163 -9.48117 -9.22570 -8.95516 -8.85928 -8.56209 -8.06294 -6.05525 -4.03178 1.34275 2.42599 3.26320 3.31441 3.34204 3.54446 4.21520 4.38120 4.40654 4.59132 4.68846 4.87394 5.08273 5.17370 5.24892 5.32069 5.35998 5.41337 5.48224 5.55833 5.58428 5.65017 5.68925 5.76887 5.82518 5.83791 5.91471 5.94102 5.95371 6.02120 6.12865 6.16974 6.19847 6.27610 6.42295 6.53225 6.62183 6.75999 6.76513 7.06519 7.07643 7.25867 7.50493 7.61438 7.79591 8.53214 9.03482 9.54260 11.07797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.007143 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.691548 B = 3918.749833 C = 5557.274519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.034 3.966 4 C 0.134 3.866 5 N -0.982 5.982 6 C 0.231 3.769 7 C -0.524 4.524 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.868 3.132 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.265 1.265 15 S 2.784 3.216 16 O -0.972 6.972 17 O -0.969 6.969 18 N -1.125 6.125 19 C 0.183 3.817 20 C -0.180 4.180 21 C -0.134 4.134 22 C -0.134 4.134 23 C -0.167 4.167 24 C -0.089 4.089 25 C -0.113 4.113 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.024 0.976 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.409 0.591 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -2.893 13.015 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.044 4.044 4 C 0.007 3.993 5 N -0.823 5.823 6 C 0.108 3.892 7 C -0.563 4.563 8 H 0.102 0.898 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.695 3.305 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.190 1.190 15 S 2.792 3.208 16 O -0.956 6.956 17 O -0.952 6.952 18 N -0.884 5.884 19 C 0.094 3.906 20 C -0.238 4.238 21 C -0.172 4.172 22 C -0.152 4.152 23 C -0.185 4.185 24 C -0.126 4.126 25 C -0.152 4.152 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.190 -3.570 12.898 17.445 hybrid contribution 1.013 1.017 -1.069 1.789 sum 12.203 -2.554 11.830 17.187 Atomic orbital electron populations 1.22652 0.82082 1.02002 0.99529 1.87970 1.18789 1.27398 1.95322 1.23175 0.94494 0.85582 1.01172 1.21202 0.92964 0.99191 0.85910 1.57525 1.80621 1.27294 1.16823 1.19376 0.97703 0.90615 0.81529 1.21464 0.94754 1.32075 1.08000 0.89847 1.24872 0.95651 0.96115 0.96371 1.69889 1.24281 1.40768 1.18532 0.86992 0.84198 0.79380 0.79947 1.20041 1.21178 1.18962 1.01982 0.72266 0.73137 0.73387 1.93553 1.76177 1.76492 1.49344 1.93630 1.80932 1.80915 1.39773 1.56371 1.29353 1.74405 1.28283 1.20073 0.92758 0.92822 0.84985 1.22656 1.02906 1.02590 0.95688 1.21547 1.02509 0.94796 0.98345 1.21928 0.95893 0.99771 0.97654 1.21913 0.99873 0.95876 1.00867 1.20403 1.00446 0.94458 0.97325 1.21825 0.94219 1.01207 0.97905 0.90396 0.95016 0.93803 0.94007 0.89999 0.90136 0.89560 0.95778 0.95103 0.92686 0.75728 0.91583 0.91870 0.89003 0.87917 0.89845 0.87911 0.88249 0.90997 0.91194 0.90644 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.69 16 2 O -0.38 -7.50 9.41 -47.67 -0.45 -7.95 16 3 C 0.03 0.61 5.99 37.16 0.22 0.83 16 4 C 0.13 2.18 3.85 -4.04 -0.02 2.16 16 5 N -0.98 -19.15 1.33 -115.66 -0.15 -19.30 16 6 C 0.23 5.21 4.12 -5.20 -0.02 5.19 16 7 C -0.52 -14.43 8.88 -34.44 -0.31 -14.73 16 8 H 0.08 2.54 7.02 -52.49 -0.37 2.17 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 11 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 15 S 2.78 55.39 5.69 -107.50 -0.61 54.77 16 16 O -0.97 -19.74 12.47 -63.25 -0.79 -20.53 16 17 O -0.97 -24.04 17.47 -57.17 -1.00 -25.04 16 18 N -1.12 -16.94 5.14 0.71 0.00 -16.94 16 19 C 0.18 2.25 0.77 -131.60 -0.10 2.15 16 20 C -0.18 -2.19 7.70 37.16 0.29 -1.90 16 21 C -0.13 -1.62 4.92 -28.18 -0.14 -1.76 16 22 C -0.13 -1.70 9.68 -35.90 -0.35 -2.05 16 23 C -0.17 -1.97 9.74 -35.90 -0.35 -2.32 16 24 C -0.09 -0.91 5.65 -28.17 -0.16 -1.06 16 25 C -0.11 -1.11 5.05 -26.51 -0.13 -1.25 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.69 6.23 -51.93 -0.32 1.37 16 31 H 0.08 1.17 5.57 -51.93 -0.29 0.88 16 32 H 0.09 1.17 7.64 -51.93 -0.40 0.78 16 33 H 0.02 0.56 7.30 -51.93 -0.38 0.18 16 34 H 0.03 0.65 7.07 -51.93 -0.37 0.29 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.41 5.65 6.88 -34.47 -0.24 5.41 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.31 3.95 -51.93 -0.21 1.10 16 40 H 0.10 1.38 2.74 -51.93 -0.14 1.24 16 41 H 0.08 0.83 8.11 -51.93 -0.42 0.40 16 42 H 0.10 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.07 0.75 6.68 -51.93 -0.35 0.40 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -34.77 363.38 -8.76 -43.53 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.29 Total: 7.33 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.05 Total: -11.11 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.62 Total: -62.62 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -2.24 Total: -53.52 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 55.39 SS G_CDS: -0.61 Total: 54.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.77 -8.76 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.300 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds