Wall clock time and date at job start Tue Mar 31 2020 16:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52998 * 109.46764 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47071 * 65.00136 * 4 3 2 6 6 C 1.46491 * 120.00281 * 84.00175 * 5 4 3 7 7 C 1.50706 * 109.47114 * 274.99778 * 6 5 4 8 8 H 1.07993 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99803 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99652 * 180.27782 * 9 7 6 11 11 Si 1.86802 * 120.00178 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47308 * 89.99910 * 11 9 7 13 13 H 1.48508 * 109.46491 * 209.99699 * 11 9 7 14 14 H 1.48497 * 109.47056 * 329.99051 * 11 9 7 15 15 S 1.65601 * 119.99815 * 263.99839 * 5 4 3 16 16 O 1.42103 * 106.40165 * 13.95981 * 15 5 4 17 17 O 1.42095 * 106.40260 * 146.87884 * 15 5 4 18 18 N 1.65599 * 107.22276 * 260.41995 * 15 5 4 19 19 C 1.46500 * 120.00083 * 59.88155 * 18 15 5 20 20 C 1.52999 * 109.63745 * 51.64036 * 19 18 15 21 21 C 1.53029 * 109.64359 * 291.22078 * 19 18 15 22 22 C 1.50060 * 110.14509 * 289.74899 * 21 19 18 23 23 C 1.29444 * 124.08305 * 342.87068 * 22 21 19 24 24 C 1.50078 * 124.06707 * 0.48964 * 23 22 21 25 25 C 1.53035 * 110.14395 * 342.83360 * 24 23 22 26 26 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47167 * 300.00099 * 1 2 3 28 28 H 1.08999 * 109.47369 * 59.99856 * 1 2 3 29 29 H 1.09002 * 109.47504 * 60.00164 * 3 2 1 30 30 H 1.08999 * 109.46874 * 299.99432 * 3 2 1 31 31 H 1.09000 * 109.47524 * 304.99921 * 4 3 2 32 32 H 1.09005 * 109.47140 * 184.99564 * 4 3 2 33 33 H 1.09005 * 109.47518 * 154.99918 * 6 5 4 34 34 H 1.08998 * 109.47375 * 35.00138 * 6 5 4 35 35 H 0.97003 * 120.00549 * 179.72771 * 10 9 7 36 36 H 0.97006 * 119.99835 * 239.89544 * 18 15 5 37 37 H 1.08997 * 109.47346 * 59.99874 * 20 19 18 38 38 H 1.08998 * 109.47244 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47300 * 300.00074 * 20 19 18 40 40 H 1.08999 * 109.35493 * 49.96157 * 21 19 18 41 41 H 1.08999 * 109.35581 * 169.54339 * 21 19 18 42 42 H 1.08000 * 117.95980 * 162.84513 * 22 21 19 43 43 H 1.07988 * 117.96870 * 180.47063 * 23 22 21 44 44 H 1.08995 * 109.35423 * 103.05651 * 24 23 22 45 45 H 1.09006 * 109.35428 * 222.63616 * 24 23 22 46 46 H 1.08997 * 109.65586 * 289.78045 * 25 24 23 47 47 H 1.08993 * 109.63685 * 169.14287 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1617 1.3847 -2.4501 7 6 2.8420 1.5402 -3.1610 8 1 1.9542 1.0746 -2.7594 9 6 2.7680 2.2777 -4.3236 10 7 1.6153 2.4180 -4.9410 11 14 4.3035 3.0836 -5.0179 12 1 4.9771 2.1444 -5.9502 13 1 3.9262 4.3206 -5.7481 14 1 5.2276 3.4269 -3.9073 15 16 4.2662 -1.0655 -1.3099 16 8 3.6964 -1.6172 -0.1308 17 8 3.9082 -1.4895 -2.6180 18 7 5.9035 -1.2775 -1.1814 19 6 6.6134 -0.7968 0.0066 20 6 5.9230 -1.3235 1.2663 21 6 6.6135 0.7334 0.0217 22 6 7.5057 1.2609 -1.0635 23 6 8.4047 0.5547 -1.6707 24 6 8.6732 -0.8933 -1.3815 25 6 8.0681 -1.2818 -0.0306 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8465 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0901 33 1 4.8776 0.9008 -3.1147 34 1 4.5381 2.3667 -2.1638 35 1 1.5623 2.9401 -5.7568 36 1 6.3926 -1.7198 -1.8928 37 1 5.9310 -2.4134 1.2563 38 1 6.4535 -0.9647 2.1483 39 1 4.8929 -0.9680 1.2917 40 1 5.5981 1.0964 -0.1370 41 1 6.9738 1.0851 0.9884 42 1 7.3903 2.2940 -1.3565 43 1 8.9982 1.0373 -2.4330 44 1 8.2300 -1.5065 -2.1660 45 1 9.7496 -1.0633 -1.3575 46 1 8.6324 -0.8094 0.7734 47 1 8.0963 -2.3652 0.0854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416555614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:09 Heat of formation + Delta-G solvation = -114.601747 kcal Electronic energy + Delta-G solvation = -30157.936243 eV Core-core repulsion = 26274.694345 eV Total energy + Delta-G solvation = -3883.241898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.49121 -39.03405 -38.10300 -37.09099 -36.66485 -34.87234 -34.52095 -31.70284 -31.46072 -31.09023 -28.95529 -27.40819 -27.04252 -24.34482 -23.93208 -23.16919 -21.99899 -20.25071 -19.13221 -18.90051 -18.53760 -18.25158 -17.51571 -16.91163 -16.71324 -16.37756 -16.13819 -15.97056 -15.61588 -15.12945 -14.97154 -14.82467 -14.47870 -14.21143 -14.01658 -13.83703 -13.81010 -13.46680 -13.38416 -13.08583 -13.07185 -12.91453 -12.81520 -12.76586 -12.59554 -12.34457 -12.22719 -12.16125 -12.06729 -11.95711 -11.79785 -11.49963 -11.31172 -10.97824 -10.74261 -10.43038 -10.33708 -9.81005 -9.59937 -8.22368 -6.25018 -0.18318 1.35911 1.39554 1.47196 1.55451 2.11473 2.37577 2.79044 3.04639 3.11268 3.58636 3.72990 3.83606 4.00921 4.08251 4.26933 4.29437 4.32855 4.36857 4.52075 4.54157 4.56416 4.62803 4.65571 4.71424 4.79367 4.82685 4.86508 4.93107 4.95533 5.00803 5.08222 5.12482 5.14448 5.25135 5.33112 5.38913 5.51974 5.56334 5.60207 5.82499 5.89818 6.20613 6.21670 6.37739 6.42670 6.80346 7.36128 8.94756 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.007143 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.691548 B = 3918.749833 C = 5557.274519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.030 3.970 4 C 0.126 3.874 5 N -0.982 5.982 6 C 0.243 3.757 7 C -0.524 4.524 8 H 0.036 0.964 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.934 3.066 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.225 1.225 15 S 2.794 3.206 16 O -0.982 6.982 17 O -1.030 7.030 18 N -1.112 6.112 19 C 0.175 3.825 20 C -0.181 4.181 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.169 4.169 24 C -0.093 4.093 25 C -0.107 4.107 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.263 0.737 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.409 -2.126 15.290 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C -0.048 4.048 4 C 0.002 3.998 5 N -0.822 5.822 6 C 0.118 3.882 7 C -0.563 4.563 8 H 0.054 0.946 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.757 3.243 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.147 1.147 15 S 2.802 3.198 16 O -0.965 6.965 17 O -1.014 7.014 18 N -0.875 5.875 19 C 0.087 3.913 20 C -0.239 4.239 21 C -0.173 4.173 22 C -0.170 4.170 23 C -0.188 4.188 24 C -0.130 4.130 25 C -0.145 4.145 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.686 -2.810 15.217 21.334 hybrid contribution -0.127 0.704 -1.682 1.828 sum 14.559 -2.106 13.535 19.990 Atomic orbital electron populations 1.22784 0.81000 1.02847 1.00033 1.87925 1.20265 1.28806 1.95454 1.23279 0.95728 0.84820 1.01008 1.21577 0.91895 1.01305 0.85072 1.57364 1.81146 1.26716 1.16969 1.19116 0.94624 0.92171 0.82307 1.21759 0.95600 1.30739 1.08239 0.94601 1.25852 0.99241 0.97150 0.96878 1.70074 1.27196 1.42522 1.19375 0.85920 0.80254 0.77981 0.80099 1.20336 1.20975 1.14713 1.01420 0.73312 0.73092 0.71937 1.93544 1.77272 1.76701 1.48952 1.93547 1.82795 1.82133 1.42881 1.55997 1.27572 1.74249 1.29690 1.20410 0.93983 0.93361 0.83539 1.22648 1.02012 1.02286 0.96941 1.21561 1.01745 0.94239 0.99732 1.22015 0.96574 0.99922 0.98448 1.22129 0.99499 0.96658 1.00466 1.20477 1.01839 0.93328 0.97336 1.21837 0.92232 1.02010 0.98450 0.89516 0.91668 0.96038 0.90286 0.93922 0.87915 0.86227 0.96050 0.92414 0.92779 0.74939 0.92164 0.88633 0.91179 0.89299 0.87087 0.88223 0.87945 0.91548 0.89088 0.88467 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.27 16 2 O -0.41 -16.43 9.41 -137.09 -1.29 -17.72 16 3 C 0.03 1.05 5.99 71.98 0.43 1.48 16 4 C 0.13 3.91 3.85 86.38 0.33 4.24 16 5 N -0.98 -37.67 1.33 -519.84 -0.69 -38.36 16 6 C 0.24 10.76 4.12 85.64 0.35 11.11 16 7 C -0.52 -29.79 8.88 25.60 0.23 -29.56 16 8 H 0.04 2.33 7.02 -2.91 -0.02 2.31 16 9 C 0.01 0.33 5.47 84.66 0.46 0.80 16 10 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 11 Si 0.93 42.70 27.47 68.60 1.88 44.58 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.22 -8.73 6.54 99.48 0.65 -8.08 16 15 S 2.79 111.27 5.69 -56.49 -0.32 110.95 16 16 O -0.98 -39.74 12.47 -122.19 -1.52 -41.26 16 17 O -1.03 -52.94 17.47 -128.00 -2.24 -55.18 16 18 N -1.11 -31.78 5.14 -151.66 -0.78 -32.56 16 19 C 0.17 3.74 0.77 3.74 0.00 3.75 16 20 C -0.18 -3.82 7.70 71.98 0.55 -3.27 16 21 C -0.13 -2.76 4.92 29.66 0.15 -2.62 16 22 C -0.15 -3.31 9.68 27.03 0.26 -3.05 16 23 C -0.17 -3.44 9.74 27.04 0.26 -3.18 16 24 C -0.09 -1.56 5.65 29.67 0.17 -1.39 16 25 C -0.11 -1.67 5.05 30.74 0.16 -1.51 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 1.84 6.23 -2.39 -0.01 1.83 16 31 H 0.10 2.75 5.57 -2.39 -0.01 2.74 16 32 H 0.12 2.87 7.64 -2.38 -0.02 2.85 16 33 H 0.02 0.97 7.30 -2.38 -0.02 0.96 16 34 H 0.06 2.27 7.07 -2.39 -0.02 2.26 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.41 10.95 6.88 -96.74 -0.67 10.28 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.82 3.95 -2.39 -0.01 1.81 16 40 H 0.09 2.09 2.74 -2.39 -0.01 2.08 16 41 H 0.11 1.65 8.11 -2.39 -0.02 1.63 16 42 H 0.10 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.10 1.98 8.06 -2.92 -0.02 1.96 16 44 H 0.07 1.20 6.68 -2.39 -0.02 1.18 16 45 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -80.40 363.38 0.21 -80.20 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.25 Total: 30.14 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.61 Total: -20.92 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -1.17 Total: -130.80 kcal Atomic # 8 Polarization: -109.11 SS G_CDS: -5.05 Total: -114.16 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.32 Total: 110.95 kcal Total: -80.40 0.21 -80.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.402 kcal (2) G-P(sol) polarization free energy of solvation -80.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds