Wall clock time and date at job start Tue Mar 31 2020 16:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00118 * 2 1 4 4 C 1.53000 * 109.47240 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46953 * 294.99732 * 4 3 2 6 6 C 1.46503 * 119.99959 * 84.99803 * 5 4 3 7 7 C 1.50703 * 109.47158 * 85.17102 * 6 5 4 8 8 H 1.08002 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00058 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46748 * 89.99855 * 11 9 7 13 13 H 1.48495 * 109.47131 * 209.99473 * 11 9 7 14 14 H 1.48497 * 109.47271 * 329.99995 * 11 9 7 15 15 S 1.65603 * 119.99998 * 264.99837 * 5 4 3 16 16 O 1.42104 * 106.40107 * 199.60802 * 15 5 4 17 17 O 1.42095 * 106.39990 * 332.53105 * 15 5 4 18 18 N 1.65602 * 107.21722 * 86.06810 * 15 5 4 19 19 C 1.46505 * 120.00040 * 59.85859 * 18 15 5 20 20 C 1.52999 * 109.63939 * 284.70911 * 19 18 15 21 21 C 1.53030 * 109.64037 * 45.34251 * 19 18 15 22 22 C 1.50064 * 110.14319 * 70.24992 * 21 19 18 23 23 C 1.29448 * 124.07947 * 17.12919 * 22 21 19 24 24 C 1.50061 * 124.07174 * 359.53051 * 23 22 21 25 25 C 1.53019 * 110.15134 * 17.13149 * 24 23 22 26 26 H 1.08996 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47193 * 300.00750 * 1 2 3 28 28 H 1.08995 * 109.46701 * 60.00247 * 1 2 3 29 29 H 1.08997 * 109.47170 * 59.99571 * 3 2 1 30 30 H 1.09004 * 109.46948 * 299.99533 * 3 2 1 31 31 H 1.09000 * 109.47173 * 54.99281 * 4 3 2 32 32 H 1.08993 * 109.47342 * 174.99555 * 4 3 2 33 33 H 1.08999 * 109.47123 * 205.16752 * 6 5 4 34 34 H 1.08994 * 109.47461 * 325.17059 * 6 5 4 35 35 H 0.97002 * 119.99990 * 179.97438 * 10 9 7 36 36 H 0.96990 * 120.00044 * 239.86115 * 18 15 5 37 37 H 1.09001 * 109.46995 * 65.30869 * 20 19 18 38 38 H 1.09001 * 109.46733 * 185.30419 * 20 19 18 39 39 H 1.08993 * 109.47282 * 305.31077 * 20 19 18 40 40 H 1.08997 * 109.35341 * 190.45718 * 21 19 18 41 41 H 1.08995 * 109.35476 * 310.04357 * 21 19 18 42 42 H 1.08006 * 117.96394 * 197.10784 * 22 21 19 43 43 H 1.07999 * 117.95988 * 179.55381 * 23 22 21 44 44 H 1.09007 * 109.36008 * 256.91932 * 24 23 22 45 45 H 1.09004 * 109.35587 * 137.33945 * 24 23 22 46 46 H 1.09004 * 109.64517 * 190.88164 * 25 24 23 47 47 H 1.08997 * 109.64195 * 70.24563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9757 0.5645 1.2528 6 6 4.0003 -0.8950 1.3783 7 6 5.3011 -1.4243 0.8315 8 1 6.0357 -0.7419 0.4303 9 6 5.5528 -2.7798 0.8426 10 7 4.6581 -3.6109 1.3307 11 14 7.1649 -3.4360 0.1642 12 1 8.1738 -3.4914 1.2524 13 1 6.9527 -4.7997 -0.3840 14 1 7.6497 -2.5385 -0.9150 15 16 4.4454 1.5131 2.5263 16 8 5.2250 0.6845 3.3777 17 8 4.9295 2.7259 1.9660 18 7 3.0791 1.9035 3.3768 19 6 2.2524 0.8445 3.9612 20 6 1.4428 0.1573 2.8597 21 6 3.1480 -0.1793 4.6623 22 6 3.7445 0.4193 5.9024 23 6 3.2961 1.4874 6.4803 24 6 2.1233 2.2818 5.9852 25 6 1.2999 1.4485 5.0008 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8515 0.5681 -0.8409 32 1 3.9786 2.1764 -0.0890 33 1 3.9087 -1.1709 2.4288 34 1 3.1696 -1.3221 0.8167 35 1 4.8350 -4.5646 1.3382 36 1 2.8262 2.8332 3.4880 37 1 2.1202 -0.3572 2.1782 38 1 0.7602 -0.5649 3.3075 39 1 0.8715 0.9044 2.3089 40 1 2.5550 -1.0531 4.9321 41 1 3.9477 -0.4824 3.9867 42 1 4.6011 -0.0717 6.3402 43 1 3.7976 1.8279 7.3741 44 1 2.4817 3.1818 5.4853 45 1 1.4966 2.5659 6.8306 46 1 0.5699 2.0861 4.5020 47 1 0.7876 0.6493 5.5363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416555615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:15 Heat of formation + Delta-G solvation = -90.460808 kcal Electronic energy + Delta-G solvation = -30354.378832 eV Core-core repulsion = 26472.183763 eV Total energy + Delta-G solvation = -3882.195068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.38412 -37.88244 -36.53796 -35.40406 -35.09423 -33.71974 -32.48413 -30.63432 -30.26480 -29.41084 -26.77070 -26.33673 -25.63309 -23.24969 -22.61398 -21.77625 -20.80012 -18.88869 -17.59488 -17.37921 -17.00730 -16.26776 -16.08983 -15.74084 -15.49184 -15.22488 -14.71894 -14.35341 -14.32841 -13.97242 -13.63010 -13.38530 -12.93714 -12.77029 -12.56578 -12.23147 -12.20185 -12.05216 -11.94759 -11.87698 -11.70859 -11.53282 -11.40383 -11.23173 -11.09693 -10.93635 -10.84967 -10.73891 -10.56806 -10.38537 -10.15321 -9.94642 -9.83003 -9.50622 -9.25771 -9.04763 -8.57051 -8.32838 -7.99262 -5.98288 -4.00733 1.32131 2.68921 3.36928 3.42762 3.46032 3.57262 4.11361 4.17951 4.50914 4.80548 4.89914 5.02541 5.16723 5.26274 5.32601 5.36517 5.37833 5.48999 5.57718 5.59533 5.60506 5.61725 5.64454 5.76299 5.79006 5.87450 5.90242 5.93930 6.10845 6.11976 6.25011 6.32604 6.34713 6.51492 6.60715 6.71372 6.85507 7.00501 7.27651 7.32949 7.48684 7.51714 7.56620 7.77197 7.99790 8.32738 9.00937 9.63129 11.09853 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.006164 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.372399 B = 4541.558404 C = 5389.910627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.038 3.962 4 C 0.124 3.876 5 N -0.985 5.985 6 C 0.251 3.749 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.779 3.221 16 O -0.958 6.958 17 O -1.006 7.006 18 N -1.123 6.123 19 C 0.186 3.814 20 C -0.189 4.189 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.192 4.192 24 C -0.081 4.081 25 C -0.113 4.113 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.405 0.595 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 10.416 4.034 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C -0.041 4.041 4 C -0.003 4.003 5 N -0.826 5.826 6 C 0.129 3.871 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 S 2.787 3.213 16 O -0.941 6.941 17 O -0.991 6.991 18 N -0.881 5.881 19 C 0.097 3.903 20 C -0.247 4.247 21 C -0.180 4.180 22 C -0.124 4.124 23 C -0.210 4.210 24 C -0.118 4.118 25 C -0.152 4.152 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.238 0.762 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.388 10.111 4.265 15.111 hybrid contribution 0.146 0.110 -0.295 0.347 sum -10.242 10.221 3.970 15.004 Atomic orbital electron populations 1.22753 0.82619 1.02463 0.99065 1.88145 1.18179 1.26752 1.94981 1.23236 0.95676 0.85556 0.99592 1.21232 0.90727 0.99060 0.89284 1.57653 1.81603 1.19126 1.24260 1.19295 0.98024 0.71545 0.98203 1.21517 1.02550 0.92088 1.40503 0.92452 1.24867 0.96747 0.96790 0.95392 1.69914 1.34308 1.03035 1.45959 0.86596 0.84095 0.78053 0.79253 1.20610 1.21287 1.19945 1.02016 0.73387 0.72481 0.73367 1.93574 1.67269 1.67579 1.65665 1.93509 1.79065 1.47512 1.78968 1.56206 1.46666 1.14425 1.70790 1.20105 0.90697 0.86812 0.92639 1.22959 1.01742 1.00836 0.99213 1.21706 1.01158 0.97511 0.97623 1.21942 0.98160 0.96676 0.95597 1.21808 0.99687 0.98424 1.01053 1.20304 0.95399 0.98044 0.98092 1.21847 0.97103 0.99861 0.96401 0.89902 0.94426 0.94966 0.93413 0.93316 0.88719 0.89229 0.93933 0.92639 0.92874 0.76218 0.87504 0.92128 0.92525 0.89745 0.85241 0.88001 0.88665 0.91562 0.91765 0.91647 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.41 101.05 1.05 1.38 16 2 O -0.36 -5.65 7.04 -35.23 -0.25 -5.90 16 3 C 0.04 0.53 5.42 37.16 0.20 0.73 16 4 C 0.12 2.09 6.13 -4.04 -0.02 2.07 16 5 N -0.99 -19.58 1.78 -115.66 -0.21 -19.79 16 6 C 0.25 5.97 2.88 -5.19 -0.01 5.95 16 7 C -0.53 -14.47 9.38 -34.44 -0.32 -14.79 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 S 2.78 54.20 5.82 -107.50 -0.63 53.58 16 16 O -0.96 -21.92 13.24 -57.17 -0.76 -22.68 16 17 O -1.01 -21.01 16.78 -57.17 -0.96 -21.97 16 18 N -1.12 -16.65 4.84 0.72 0.00 -16.65 16 19 C 0.19 2.65 0.78 -131.60 -0.10 2.55 16 20 C -0.19 -2.70 6.34 37.16 0.24 -2.47 16 21 C -0.14 -2.42 4.19 -28.17 -0.12 -2.53 16 22 C -0.11 -1.69 9.03 -35.90 -0.32 -2.01 16 23 C -0.19 -2.62 9.74 -35.90 -0.35 -2.97 16 24 C -0.08 -0.92 5.67 -28.18 -0.16 -1.08 16 25 C -0.11 -1.28 4.97 -26.52 -0.13 -1.41 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.39 6.52 -51.93 -0.34 0.05 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.61 6.33 -51.93 -0.33 0.28 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 32 H 0.09 1.40 6.97 -51.93 -0.36 1.04 16 33 H 0.04 1.07 4.80 -51.93 -0.25 0.82 16 34 H 0.06 1.38 6.24 -51.93 -0.32 1.06 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.41 5.00 7.64 -34.47 -0.26 4.73 16 37 H 0.11 1.84 2.17 -51.93 -0.11 1.73 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.71 4.52 -51.93 -0.23 0.47 16 40 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.13 2.69 2.71 -51.93 -0.14 2.55 16 42 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.10 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.07 0.72 7.10 -51.92 -0.37 0.35 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -32.35 354.46 -8.81 -41.16 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.91 Total: 7.81 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.16 Total: -12.89 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.53 Total: -61.23 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -1.96 Total: -50.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.63 Total: 53.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.35 -8.81 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.301 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds