Wall clock time and date at job start Tue Mar 31 2020 16:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00118 * 2 1 4 4 C 1.53000 * 109.47240 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46953 * 294.99732 * 4 3 2 6 6 C 1.46503 * 119.99959 * 84.99803 * 5 4 3 7 7 C 1.50703 * 109.47158 * 85.17102 * 6 5 4 8 8 H 1.08002 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00058 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46748 * 89.99855 * 11 9 7 13 13 H 1.48495 * 109.47131 * 209.99473 * 11 9 7 14 14 H 1.48497 * 109.47271 * 329.99995 * 11 9 7 15 15 S 1.65603 * 119.99998 * 264.99837 * 5 4 3 16 16 O 1.42104 * 106.40107 * 199.60802 * 15 5 4 17 17 O 1.42095 * 106.39990 * 332.53105 * 15 5 4 18 18 N 1.65602 * 107.21722 * 86.06810 * 15 5 4 19 19 C 1.46505 * 120.00040 * 59.85859 * 18 15 5 20 20 C 1.52999 * 109.63939 * 284.70911 * 19 18 15 21 21 C 1.53030 * 109.64037 * 45.34251 * 19 18 15 22 22 C 1.50064 * 110.14319 * 70.24992 * 21 19 18 23 23 C 1.29448 * 124.07947 * 17.12919 * 22 21 19 24 24 C 1.50061 * 124.07174 * 359.53051 * 23 22 21 25 25 C 1.53019 * 110.15134 * 17.13149 * 24 23 22 26 26 H 1.08996 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47193 * 300.00750 * 1 2 3 28 28 H 1.08995 * 109.46701 * 60.00247 * 1 2 3 29 29 H 1.08997 * 109.47170 * 59.99571 * 3 2 1 30 30 H 1.09004 * 109.46948 * 299.99533 * 3 2 1 31 31 H 1.09000 * 109.47173 * 54.99281 * 4 3 2 32 32 H 1.08993 * 109.47342 * 174.99555 * 4 3 2 33 33 H 1.08999 * 109.47123 * 205.16752 * 6 5 4 34 34 H 1.08994 * 109.47461 * 325.17059 * 6 5 4 35 35 H 0.97002 * 119.99990 * 179.97438 * 10 9 7 36 36 H 0.96990 * 120.00044 * 239.86115 * 18 15 5 37 37 H 1.09001 * 109.46995 * 65.30869 * 20 19 18 38 38 H 1.09001 * 109.46733 * 185.30419 * 20 19 18 39 39 H 1.08993 * 109.47282 * 305.31077 * 20 19 18 40 40 H 1.08997 * 109.35341 * 190.45718 * 21 19 18 41 41 H 1.08995 * 109.35476 * 310.04357 * 21 19 18 42 42 H 1.08006 * 117.96394 * 197.10784 * 22 21 19 43 43 H 1.07999 * 117.95988 * 179.55381 * 23 22 21 44 44 H 1.09007 * 109.36008 * 256.91932 * 24 23 22 45 45 H 1.09004 * 109.35587 * 137.33945 * 24 23 22 46 46 H 1.09004 * 109.64517 * 190.88164 * 25 24 23 47 47 H 1.08997 * 109.64195 * 70.24563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9757 0.5645 1.2528 6 6 4.0003 -0.8950 1.3783 7 6 5.3011 -1.4243 0.8315 8 1 6.0357 -0.7419 0.4303 9 6 5.5528 -2.7798 0.8426 10 7 4.6581 -3.6109 1.3307 11 14 7.1649 -3.4360 0.1642 12 1 8.1738 -3.4914 1.2524 13 1 6.9527 -4.7997 -0.3840 14 1 7.6497 -2.5385 -0.9150 15 16 4.4454 1.5131 2.5263 16 8 5.2250 0.6845 3.3777 17 8 4.9295 2.7259 1.9660 18 7 3.0791 1.9035 3.3768 19 6 2.2524 0.8445 3.9612 20 6 1.4428 0.1573 2.8597 21 6 3.1480 -0.1793 4.6623 22 6 3.7445 0.4193 5.9024 23 6 3.2961 1.4874 6.4803 24 6 2.1233 2.2818 5.9852 25 6 1.2999 1.4485 5.0008 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8515 0.5681 -0.8409 32 1 3.9786 2.1764 -0.0890 33 1 3.9087 -1.1709 2.4288 34 1 3.1696 -1.3221 0.8167 35 1 4.8350 -4.5646 1.3382 36 1 2.8262 2.8332 3.4880 37 1 2.1202 -0.3572 2.1782 38 1 0.7602 -0.5649 3.3075 39 1 0.8715 0.9044 2.3089 40 1 2.5550 -1.0531 4.9321 41 1 3.9477 -0.4824 3.9867 42 1 4.6011 -0.0717 6.3402 43 1 3.7976 1.8279 7.3741 44 1 2.4817 3.1818 5.4853 45 1 1.4966 2.5659 6.8306 46 1 0.5699 2.0861 4.5020 47 1 0.7876 0.6493 5.5363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416555615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:14 Heat of formation + Delta-G solvation = -113.472639 kcal Electronic energy + Delta-G solvation = -30355.376699 eV Core-core repulsion = 26472.183763 eV Total energy + Delta-G solvation = -3883.192936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.53625 -39.05655 -38.14319 -36.92980 -36.72953 -34.90599 -34.49308 -31.72411 -31.48733 -30.82655 -28.39111 -27.49571 -26.83987 -24.69116 -23.94665 -23.20608 -21.97084 -20.28078 -19.04065 -18.82922 -18.38813 -18.19198 -17.32617 -17.00419 -16.67039 -16.57417 -16.32446 -15.82776 -15.44097 -15.15981 -15.03458 -14.73810 -14.40376 -14.07647 -13.92415 -13.73205 -13.51061 -13.30554 -13.26442 -13.20178 -13.06418 -12.93209 -12.92438 -12.64661 -12.56239 -12.44631 -12.37724 -12.15029 -12.00952 -11.82996 -11.77091 -11.58574 -11.27712 -10.81862 -10.49821 -10.39271 -10.19264 -9.71476 -9.65597 -8.11284 -6.20332 -0.21032 1.39189 1.41663 1.50223 1.53666 2.11857 2.44283 2.71508 3.08625 3.20401 3.57326 3.70919 3.87724 3.96350 4.07914 4.25002 4.30017 4.42536 4.50547 4.53415 4.54680 4.60562 4.67635 4.71032 4.72629 4.82431 4.92571 4.97011 5.02177 5.05433 5.09367 5.16643 5.19788 5.28189 5.34570 5.52038 5.53397 5.62990 5.73086 5.83636 5.87839 6.02365 6.21091 6.27597 6.33846 6.52887 6.88713 7.46135 8.95202 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.006164 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.372399 B = 4541.558404 C = 5389.910627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.044 3.956 4 C 0.114 3.886 5 N -0.988 5.988 6 C 0.276 3.724 7 C -0.547 4.547 8 H 0.045 0.955 9 C 0.016 3.984 10 N -0.918 5.918 11 Si 0.945 3.055 12 H -0.282 1.282 13 H -0.276 1.276 14 H -0.269 1.269 15 S 2.790 3.210 16 O -0.997 6.997 17 O -1.022 7.022 18 N -1.102 6.102 19 C 0.188 3.812 20 C -0.188 4.188 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.170 4.170 24 C -0.086 4.086 25 C -0.106 4.106 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.421 0.579 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 12.534 4.359 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.034 4.034 4 C -0.012 4.012 5 N -0.828 5.828 6 C 0.153 3.847 7 C -0.586 4.586 8 H 0.063 0.937 9 C -0.183 4.183 10 N -0.558 5.558 11 Si 0.771 3.229 12 H -0.208 1.208 13 H -0.201 1.201 14 H -0.194 1.194 15 S 2.799 3.201 16 O -0.980 6.980 17 O -1.007 7.007 18 N -0.865 5.865 19 C 0.100 3.900 20 C -0.246 4.246 21 C -0.182 4.182 22 C -0.161 4.161 23 C -0.188 4.188 24 C -0.122 4.122 25 C -0.145 4.145 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.258 0.742 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.578 12.261 4.567 18.149 hybrid contribution 0.803 -0.503 -0.344 1.008 sum -11.775 11.758 4.223 17.168 Atomic orbital electron populations 1.22897 0.80681 1.02913 1.00713 1.88105 1.20386 1.27728 1.95310 1.23164 0.93129 0.85482 1.01658 1.21454 0.93512 0.98847 0.87358 1.57465 1.82099 1.17479 1.25761 1.18740 0.95592 0.73643 0.96677 1.21926 1.03900 0.92384 1.40431 0.93676 1.25586 0.99683 0.97198 0.95857 1.70001 1.35738 1.03225 1.46842 0.85756 0.80514 0.77957 0.78648 1.20824 1.20098 1.19365 1.01442 0.73900 0.71667 0.73107 1.93551 1.69257 1.68570 1.66658 1.93476 1.79974 1.47791 1.79413 1.55715 1.45448 1.15617 1.69710 1.20190 0.90408 0.86117 0.93334 1.22901 1.01398 1.01448 0.98827 1.21593 1.00451 0.98666 0.97523 1.21829 0.99097 0.98656 0.96542 1.22171 0.99576 0.96702 1.00344 1.20457 0.94688 0.97793 0.99299 1.21860 0.96678 1.00489 0.95463 0.90201 0.92774 0.93163 0.91874 0.90427 0.90506 0.88046 0.95332 0.93956 0.92729 0.74232 0.90536 0.91176 0.90324 0.89992 0.89421 0.90081 0.87426 0.90325 0.88784 0.88614 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.41 113.37 1.18 1.69 16 2 O -0.40 -11.93 7.04 -148.98 -1.05 -12.98 16 3 C 0.04 1.14 5.42 71.98 0.39 1.53 16 4 C 0.11 3.84 6.13 86.38 0.53 4.37 16 5 N -0.99 -40.00 1.78 -519.85 -0.93 -40.93 16 6 C 0.28 13.71 2.88 85.63 0.25 13.96 16 7 C -0.55 -31.19 9.38 25.60 0.24 -30.95 16 8 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.02 0.93 5.46 84.65 0.46 1.39 16 10 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 11 Si 0.95 45.64 29.54 68.60 2.03 47.66 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 S 2.79 109.67 5.82 -56.49 -0.33 109.34 16 16 O -1.00 -47.64 13.24 -128.00 -1.70 -49.33 16 17 O -1.02 -42.28 16.78 -128.00 -2.15 -44.42 16 18 N -1.10 -30.81 4.84 -151.65 -0.73 -31.55 16 19 C 0.19 5.03 0.78 3.74 0.00 5.04 16 20 C -0.19 -5.04 6.34 71.98 0.46 -4.59 16 21 C -0.14 -5.01 4.19 29.66 0.12 -4.89 16 22 C -0.14 -4.63 9.03 27.03 0.24 -4.39 16 23 C -0.17 -4.31 9.74 27.03 0.26 -4.05 16 24 C -0.09 -1.58 5.67 29.65 0.17 -1.41 16 25 C -0.11 -1.97 4.97 30.73 0.15 -1.82 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 0.95 6.52 -2.39 -0.02 0.93 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.42 6.33 -2.39 -0.02 1.40 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 32 H 0.10 3.10 6.97 -2.39 -0.02 3.08 16 33 H 0.03 1.52 4.80 -2.39 -0.01 1.51 16 34 H 0.04 2.21 6.24 -2.39 -0.01 2.19 16 35 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.42 9.04 7.64 -96.76 -0.74 8.30 16 37 H 0.08 2.63 2.17 -2.39 -0.01 2.63 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.71 4.52 -2.39 -0.01 1.70 16 40 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 41 H 0.09 3.87 2.71 -2.39 -0.01 3.87 16 42 H 0.08 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.08 1.33 7.10 -2.38 -0.02 1.31 16 45 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 Total: -1.00 -73.12 354.46 0.14 -72.98 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.25 Total: 27.11 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 4.46 Total: -24.11 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -1.37 Total: -126.24 kcal Atomic # 8 Polarization: -101.85 SS G_CDS: -4.89 Total: -106.74 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 109.67 SS G_CDS: -0.33 Total: 109.34 kcal Total: -73.12 0.14 -72.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.493 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds