Wall clock time and date at job start Tue Mar 31 2020 16:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47026 * 270.00325 * 3 2 1 5 5 H 1.48496 * 109.47075 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.47149 * 150.00104 * 3 2 1 7 7 C 1.37878 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99721 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00296 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47567 * 179.97438 * 9 7 2 11 11 C 1.34980 * 125.97535 * 124.99626 * 10 9 7 12 12 C 1.35213 * 107.87789 * 179.78902 * 11 10 9 13 13 C 1.40461 * 107.86564 * 0.37527 * 12 11 10 14 14 N 1.39930 * 125.97968 * 179.88568 * 13 12 11 15 15 C 1.34784 * 120.00040 * 359.71509 * 14 13 12 16 16 O 1.21386 * 119.99503 * 359.72625 * 15 14 13 17 17 C 1.49342 * 119.99989 * 179.72705 * 15 14 13 18 18 O 1.21360 * 119.99788 * 359.97438 * 17 15 14 19 19 N 1.34774 * 119.99573 * 180.02562 * 17 15 14 20 20 C 1.49290 * 127.10604 * 0.02562 * 19 17 15 21 21 C 1.56235 * 106.50828 * 171.32214 * 20 19 17 22 22 C 1.52133 * 100.80953 * 336.55363 * 21 20 19 23 23 H 1.08999 * 111.08987 * 285.39101 * 22 21 20 24 24 C 1.51226 * 122.11786 * 151.20576 * 22 21 20 25 25 C 1.55690 * 104.60676 * 218.73192 * 24 22 21 26 26 C 1.56281 * 105.93544 * 7.25306 * 25 24 22 27 27 C 1.42716 * 127.09887 * 179.70700 * 19 17 15 28 28 H 1.09002 * 108.16793 * 103.47823 * 27 19 17 29 29 N 1.31265 * 108.03786 * 359.62456 * 13 12 11 30 30 H 0.97000 * 119.99882 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47242 * 60.00355 * 9 7 2 32 32 H 1.09000 * 109.47839 * 300.00029 * 9 7 2 33 33 H 1.08007 * 126.05955 * 0.02562 * 11 10 9 34 34 H 1.08007 * 126.06607 * 180.22449 * 12 11 10 35 35 H 0.97000 * 120.00563 * 179.43956 * 14 13 12 36 36 H 1.08997 * 110.05597 * 290.58593 * 20 19 17 37 37 H 1.09005 * 110.04467 * 52.01478 * 20 19 17 38 38 H 1.09005 * 111.15124 * 94.44016 * 21 20 19 39 39 H 1.09000 * 111.14965 * 218.62531 * 21 20 19 40 40 H 1.08998 * 110.40928 * 337.51510 * 24 22 21 41 41 H 1.08996 * 110.40609 * 99.95200 * 24 22 21 42 42 H 1.08999 * 110.16300 * 126.37024 * 25 24 22 43 43 H 1.09001 * 110.15927 * 248.06210 * 25 24 22 44 44 H 1.09003 * 110.97579 * 142.37658 * 26 25 24 45 45 H 1.09006 * 110.97288 * 266.10140 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 4.8547 -3.1141 -0.8961 12 6 5.0599 -4.4047 -0.5491 13 6 4.2945 -4.6693 0.5986 14 7 4.2243 -5.8916 1.2761 15 6 4.9294 -6.9505 0.8308 16 8 5.6214 -6.8450 -0.1609 17 6 4.8592 -8.2533 1.5574 18 8 4.1676 -8.3585 2.5491 19 7 5.5647 -9.3119 1.1123 20 6 6.4610 -9.3597 -0.0806 21 6 7.2018 -10.7341 -0.0246 22 6 7.1080 -11.0484 1.4610 23 1 7.8004 -10.4339 2.0364 24 6 7.0786 -12.4677 1.9822 25 6 6.0590 -12.4330 3.1583 26 6 5.4130 -11.0104 3.1243 27 6 5.6141 -10.6170 1.6878 28 1 4.9967 -11.2795 1.0812 29 7 3.6611 -3.5677 0.9276 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6804 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 5.2991 -2.6036 -1.7378 34 1 5.6971 -5.1081 -1.0645 35 1 3.6713 -5.9759 2.0686 36 1 5.8710 -9.2903 -0.9945 37 1 7.1823 -8.5435 -0.0389 38 1 6.6822 -11.4855 -0.6192 39 1 8.2400 -10.6344 -0.3413 40 1 6.7386 -13.1513 1.2043 41 1 8.0647 -12.7607 2.3425 42 1 5.2942 -13.1963 3.0151 43 1 6.5735 -12.5906 4.1062 44 1 4.3532 -11.0570 3.3748 45 1 5.9394 -10.3268 3.7905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427401519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:08 Heat of formation + Delta-G solvation = 39.931113 kcal Electronic energy + Delta-G solvation = -27885.590579 eV Core-core repulsion = 23905.898529 eV Total energy + Delta-G solvation = -3979.692050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50506 -40.75746 -39.59614 -38.11513 -35.65128 -34.75642 -33.30888 -32.01026 -31.33986 -29.51724 -28.66336 -27.41041 -27.28328 -25.33834 -23.13923 -22.31142 -21.79998 -20.79237 -20.51922 -19.92332 -19.18129 -17.57451 -17.36074 -17.01675 -16.52990 -16.42994 -16.02294 -15.40712 -15.25091 -14.97819 -14.70755 -14.40750 -13.88793 -13.78631 -13.51155 -13.42273 -13.25736 -13.02116 -12.59900 -12.52487 -12.41910 -12.25305 -12.20158 -11.73157 -11.48604 -11.26135 -11.18224 -11.07670 -10.88943 -10.78097 -10.73762 -10.68392 -10.10263 -10.04906 -9.58432 -9.50796 -8.98939 -8.78274 -8.30145 -7.65106 -6.24751 -4.27610 1.19700 1.95953 2.58409 2.91478 2.98747 3.14380 3.21145 3.23124 3.50825 3.61358 3.80549 4.13550 4.21430 4.30033 4.34961 4.53107 4.75280 4.76045 4.90462 4.98118 5.02222 5.07651 5.18899 5.30772 5.31993 5.46533 5.47485 5.54116 5.59685 5.61096 5.67981 5.75039 5.80703 5.95286 6.00819 6.02155 6.26250 6.33332 6.40180 6.60603 6.97830 7.14545 7.18547 7.31158 7.61993 7.73336 7.93905 8.30035 8.45634 8.84731 9.29565 10.87858 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032978 B = 0.002120 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.849625 B =13204.526648 C =13753.755217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.282 4.282 13 C 0.255 3.745 14 N -0.599 5.599 15 C 0.516 3.484 16 O -0.497 6.497 17 C 0.529 3.471 18 O -0.512 6.512 19 N -0.577 5.577 20 C 0.110 3.890 21 C -0.122 4.122 22 C -0.121 4.121 23 H 0.087 0.913 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.109 4.109 27 C 0.116 3.884 28 H 0.070 0.930 29 N -0.287 5.287 30 H 0.269 0.731 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.424 0.576 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.309 -24.027 1.102 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.002 3.998 14 N -0.248 5.248 15 C 0.296 3.704 16 O -0.370 6.370 17 C 0.312 3.688 18 O -0.387 6.387 19 N -0.311 5.311 20 C -0.011 4.011 21 C -0.160 4.160 22 C -0.140 4.140 23 H 0.105 0.895 24 C -0.148 4.148 25 C -0.159 4.159 26 C -0.147 4.147 27 C 0.011 3.989 28 H 0.087 0.913 29 N -0.118 5.118 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.338 -23.132 1.770 28.375 hybrid contribution 0.428 0.679 -0.238 0.836 sum 16.766 -22.453 1.533 28.064 Atomic orbital electron populations 1.69871 1.06159 1.27337 1.48947 1.24838 0.94883 0.98813 0.94231 0.86902 0.80434 0.83827 0.78906 1.19697 1.20501 1.18863 1.21095 0.87701 0.95769 1.52874 0.89600 1.20093 0.97566 0.72776 0.98337 1.48698 1.32205 1.10313 1.18446 1.22574 0.95798 0.94604 0.96668 1.21528 1.11266 0.96967 1.01531 1.19013 0.99568 0.86323 0.94928 1.41999 1.45808 1.06870 1.30090 1.19836 0.80938 0.84513 0.85124 1.90678 1.38463 1.83293 1.24521 1.19578 0.80603 0.83991 0.84615 1.90797 1.39283 1.83409 1.25244 1.47332 1.45128 1.09684 1.28913 1.23094 0.92759 0.98192 0.87064 1.22410 1.01385 0.96373 0.95793 1.22552 0.96910 0.97847 0.96707 0.89479 1.21663 0.99797 0.95299 0.97997 1.22857 0.98050 0.96276 0.98694 1.21781 1.02107 0.96396 0.94440 1.21285 0.97413 0.82853 0.97390 0.91254 1.77472 1.23152 0.95470 1.15701 0.92136 0.93879 0.93181 0.81147 0.81974 0.73875 0.89921 0.89143 0.90190 0.89646 0.91125 0.91116 0.91188 0.91097 0.90403 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.54 -15.08 9.79 -34.44 -0.34 -15.41 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 C 0.23 5.41 5.33 -5.19 -0.03 5.38 16 10 N -0.31 -7.02 3.67 -62.56 -0.23 -7.24 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.22 9.60 -39.82 -0.38 -5.60 16 13 C 0.25 5.07 8.10 -154.56 -1.25 3.82 16 14 N -0.60 -10.01 5.43 -11.58 -0.06 -10.07 16 15 C 0.52 7.75 7.83 -11.63 -0.09 7.66 16 16 O -0.50 -7.66 11.45 5.47 0.06 -7.59 16 17 C 0.53 7.19 7.94 -11.64 -0.09 7.10 16 18 O -0.51 -7.86 16.20 5.49 0.09 -7.77 16 19 N -0.58 -6.22 3.22 -164.02 -0.53 -6.74 16 20 C 0.11 0.93 5.71 -0.76 0.00 0.93 16 21 C -0.12 -0.68 6.70 -25.44 -0.17 -0.85 16 22 C -0.12 -0.77 3.19 -89.71 -0.29 -1.05 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.11 -0.54 6.57 -26.19 -0.17 -0.71 16 25 C -0.12 -0.68 6.93 -23.54 -0.16 -0.84 16 26 C -0.11 -0.91 5.96 -26.32 -0.16 -1.07 16 27 C 0.12 1.01 2.77 -69.02 -0.19 0.82 16 28 H 0.07 0.59 7.95 -51.93 -0.41 0.17 16 29 N -0.29 -6.59 12.42 31.41 0.39 -6.20 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 32 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 33 H 0.17 2.43 8.06 -52.48 -0.42 2.01 16 34 H 0.16 2.78 5.91 -52.48 -0.31 2.47 16 35 H 0.42 6.61 8.29 -40.82 -0.34 6.27 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 0.82 7.27 -51.93 -0.38 0.44 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -33.19 367.83 -8.69 -41.89 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.44 Total: 5.66 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.62 Total: 2.99 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.34 Total: -56.04 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.15 Total: -15.37 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.19 -8.69 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427401519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.817 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds