Wall clock time and date at job start Tue Mar 31 2020 16:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47026 * 270.00325 * 3 2 1 5 5 H 1.48496 * 109.47075 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.47149 * 150.00104 * 3 2 1 7 7 C 1.37878 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99721 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00296 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47567 * 179.97438 * 9 7 2 11 11 C 1.34980 * 125.97535 * 124.99626 * 10 9 7 12 12 C 1.35213 * 107.87789 * 179.78902 * 11 10 9 13 13 C 1.40461 * 107.86564 * 0.37527 * 12 11 10 14 14 N 1.39930 * 125.97968 * 179.88568 * 13 12 11 15 15 C 1.34784 * 120.00040 * 359.71509 * 14 13 12 16 16 O 1.21386 * 119.99503 * 359.72625 * 15 14 13 17 17 C 1.49342 * 119.99989 * 179.72705 * 15 14 13 18 18 O 1.21360 * 119.99788 * 359.97438 * 17 15 14 19 19 N 1.34774 * 119.99573 * 180.02562 * 17 15 14 20 20 C 1.49290 * 127.10604 * 0.02562 * 19 17 15 21 21 C 1.56235 * 106.50828 * 171.32214 * 20 19 17 22 22 C 1.52133 * 100.80953 * 336.55363 * 21 20 19 23 23 H 1.08999 * 111.08987 * 285.39101 * 22 21 20 24 24 C 1.51226 * 122.11786 * 151.20576 * 22 21 20 25 25 C 1.55690 * 104.60676 * 218.73192 * 24 22 21 26 26 C 1.56281 * 105.93544 * 7.25306 * 25 24 22 27 27 C 1.42716 * 127.09887 * 179.70700 * 19 17 15 28 28 H 1.09002 * 108.16793 * 103.47823 * 27 19 17 29 29 N 1.31265 * 108.03786 * 359.62456 * 13 12 11 30 30 H 0.97000 * 119.99882 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47242 * 60.00355 * 9 7 2 32 32 H 1.09000 * 109.47839 * 300.00029 * 9 7 2 33 33 H 1.08007 * 126.05955 * 0.02562 * 11 10 9 34 34 H 1.08007 * 126.06607 * 180.22449 * 12 11 10 35 35 H 0.97000 * 120.00563 * 179.43956 * 14 13 12 36 36 H 1.08997 * 110.05597 * 290.58593 * 20 19 17 37 37 H 1.09005 * 110.04467 * 52.01478 * 20 19 17 38 38 H 1.09005 * 111.15124 * 94.44016 * 21 20 19 39 39 H 1.09000 * 111.14965 * 218.62531 * 21 20 19 40 40 H 1.08998 * 110.40928 * 337.51510 * 24 22 21 41 41 H 1.08996 * 110.40609 * 99.95200 * 24 22 21 42 42 H 1.08999 * 110.16300 * 126.37024 * 25 24 22 43 43 H 1.09001 * 110.15927 * 248.06210 * 25 24 22 44 44 H 1.09003 * 110.97579 * 142.37658 * 26 25 24 45 45 H 1.09006 * 110.97288 * 266.10140 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 4.8547 -3.1141 -0.8961 12 6 5.0599 -4.4047 -0.5491 13 6 4.2945 -4.6693 0.5986 14 7 4.2243 -5.8916 1.2761 15 6 4.9294 -6.9505 0.8308 16 8 5.6214 -6.8450 -0.1609 17 6 4.8592 -8.2533 1.5574 18 8 4.1676 -8.3585 2.5491 19 7 5.5647 -9.3119 1.1123 20 6 6.4610 -9.3597 -0.0806 21 6 7.2018 -10.7341 -0.0246 22 6 7.1080 -11.0484 1.4610 23 1 7.8004 -10.4339 2.0364 24 6 7.0786 -12.4677 1.9822 25 6 6.0590 -12.4330 3.1583 26 6 5.4130 -11.0104 3.1243 27 6 5.6141 -10.6170 1.6878 28 1 4.9967 -11.2795 1.0812 29 7 3.6611 -3.5677 0.9276 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6804 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 5.2991 -2.6036 -1.7378 34 1 5.6971 -5.1081 -1.0645 35 1 3.6713 -5.9759 2.0686 36 1 5.8710 -9.2903 -0.9945 37 1 7.1823 -8.5435 -0.0389 38 1 6.6822 -11.4855 -0.6192 39 1 8.2400 -10.6344 -0.3413 40 1 6.7386 -13.1513 1.2043 41 1 8.0647 -12.7607 2.3425 42 1 5.2942 -13.1963 3.0151 43 1 6.5735 -12.5906 4.1062 44 1 4.3532 -11.0570 3.3748 45 1 5.9394 -10.3268 3.7905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427401519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:07 Heat of formation + Delta-G solvation = 17.672037 kcal Electronic energy + Delta-G solvation = -27886.555805 eV Core-core repulsion = 23905.898529 eV Total energy + Delta-G solvation = -3980.657276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58790 -42.00714 -40.71414 -39.22432 -36.71172 -35.86991 -35.20499 -33.16498 -32.68692 -31.07499 -29.56063 -28.95771 -27.91212 -26.50419 -24.56365 -23.58297 -22.69322 -22.06056 -21.34673 -21.03568 -20.32114 -19.13638 -18.62684 -18.36471 -17.86508 -17.50953 -17.08277 -16.84438 -16.36949 -15.88176 -15.82082 -15.78095 -15.29272 -14.90817 -14.64072 -14.45879 -14.38234 -14.07796 -13.90891 -13.90083 -13.67035 -13.13783 -13.07698 -12.84013 -12.69923 -12.47543 -12.38053 -12.13815 -11.84788 -11.83205 -11.70044 -11.61923 -11.49624 -11.37796 -11.25683 -10.87777 -10.70243 -9.89772 -9.82100 -9.22081 -8.38216 -6.49096 -0.00252 0.78205 1.10307 1.36100 1.39475 1.49124 1.69108 1.73623 2.21300 2.28605 2.33342 2.93839 2.95262 3.18436 3.64712 3.77299 3.85515 3.96985 4.14683 4.17672 4.23729 4.37259 4.44780 4.54139 4.55179 4.58169 4.64408 4.77751 4.80303 4.83021 4.84163 4.90187 4.97669 5.05790 5.09094 5.16003 5.22124 5.22713 5.23330 5.40885 5.51511 5.72155 5.86326 5.97241 6.07094 6.36865 6.43236 6.56857 6.72995 6.91152 7.13771 8.78979 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032978 B = 0.002120 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.849625 B =13204.526648 C =13753.755217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.549 4.549 8 H 0.024 0.976 9 C 0.238 3.762 10 N -0.340 5.340 11 C 0.066 3.934 12 C -0.287 4.287 13 C 0.258 3.742 14 N -0.604 5.604 15 C 0.519 3.481 16 O -0.497 6.497 17 C 0.528 3.472 18 O -0.539 6.539 19 N -0.570 5.570 20 C 0.102 3.898 21 C -0.109 4.109 22 C -0.108 4.108 23 H 0.079 0.921 24 C -0.104 4.104 25 C -0.114 4.114 26 C -0.113 4.113 27 C 0.095 3.905 28 H 0.078 0.922 29 N -0.345 5.345 30 H 0.272 0.728 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.218 0.782 34 H 0.179 0.821 35 H 0.425 0.575 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.791 -24.767 -0.299 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.587 4.587 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.122 5.122 11 C -0.082 4.082 12 C -0.318 4.318 13 C 0.004 3.996 14 N -0.253 5.253 15 C 0.300 3.700 16 O -0.370 6.370 17 C 0.310 3.690 18 O -0.417 6.417 19 N -0.302 5.302 20 C -0.019 4.019 21 C -0.146 4.146 22 C -0.127 4.127 23 H 0.098 0.902 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.009 4.009 28 H 0.096 0.904 29 N -0.176 5.176 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.196 0.804 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.874 -23.945 0.342 31.120 hybrid contribution -0.679 0.704 0.183 0.994 sum 19.196 -23.242 0.525 30.149 Atomic orbital electron populations 1.70058 1.08657 1.28837 1.50589 1.25971 0.95805 1.03701 0.93190 0.85584 0.79456 0.76966 0.80160 1.17486 1.20792 1.16137 1.21233 0.90590 0.93697 1.53170 0.95728 1.19941 0.94103 0.74184 0.99914 1.48584 1.33839 1.10048 1.19711 1.23352 0.93893 0.94545 0.96445 1.21794 1.11339 0.97496 1.01125 1.19368 0.98533 0.86510 0.95172 1.42139 1.46453 1.06488 1.30267 1.20173 0.80175 0.84627 0.84988 1.90649 1.38317 1.83456 1.24568 1.19291 0.81237 0.84060 0.84427 1.90786 1.40841 1.83730 1.26357 1.47513 1.43874 1.09526 1.29300 1.23321 0.92434 1.00150 0.85970 1.22416 1.02277 0.94566 0.95373 1.22554 0.94329 0.98642 0.97218 0.90210 1.21671 1.00282 0.94334 0.97838 1.22840 0.98431 0.94292 0.99666 1.21795 1.01184 0.98103 0.94000 1.21628 0.99875 0.81667 0.97731 0.90407 1.77381 1.25569 0.96912 1.17754 0.91879 0.93572 0.89509 0.76545 0.80430 0.73700 0.89977 0.89754 0.88591 0.87614 0.89711 0.89694 0.90302 0.90362 0.92116 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.96 40.64 27.47 68.60 1.88 42.52 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 7 C -0.55 -31.84 9.79 25.60 0.25 -31.59 16 8 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 9 C 0.24 10.92 5.33 85.63 0.46 11.38 16 10 N -0.34 -15.08 3.67 -351.85 -1.29 -16.37 16 11 C 0.07 2.30 11.43 83.51 0.95 3.26 16 12 C -0.29 -10.33 9.60 22.11 0.21 -10.11 16 13 C 0.26 10.47 8.10 133.40 1.08 11.55 16 14 N -0.60 -20.93 5.43 -308.89 -1.68 -22.61 16 15 C 0.52 15.83 7.83 87.23 0.68 16.51 16 16 O -0.50 -15.04 11.45 -3.36 -0.04 -15.08 16 17 C 0.53 14.66 7.94 87.24 0.69 15.36 16 18 O -0.54 -17.34 16.20 -3.28 -0.05 -17.40 16 19 N -0.57 -12.04 3.22 -791.20 -2.55 -14.58 16 20 C 0.10 1.56 5.71 86.96 0.50 2.06 16 21 C -0.11 -0.88 6.70 31.43 0.21 -0.67 16 22 C -0.11 -1.11 3.19 -10.20 -0.03 -1.14 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 C -0.10 -0.69 6.57 30.94 0.20 -0.49 16 25 C -0.11 -1.07 6.93 32.66 0.23 -0.84 16 26 C -0.11 -1.86 5.96 30.86 0.18 -1.68 16 27 C 0.10 1.57 2.77 46.27 0.13 1.70 16 28 H 0.08 1.19 7.95 -2.39 -0.02 1.17 16 29 N -0.35 -16.41 12.42 -54.54 -0.68 -17.09 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 32 H 0.09 3.35 7.50 -2.39 -0.02 3.33 16 33 H 0.22 5.27 8.06 -2.91 -0.02 5.25 16 34 H 0.18 5.77 5.91 -2.91 -0.02 5.75 16 35 H 0.43 14.19 8.29 -92.71 -0.77 13.42 16 36 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.08 1.42 7.27 -2.38 -0.02 1.40 16 38 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -77.35 367.83 2.30 -75.05 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.20 Total: 27.42 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.21 Total: 16.44 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -5.89 Total: -128.95 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.09 Total: -32.48 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.52 kcal Total: -77.35 2.30 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427401519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.717 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds