Wall clock time and date at job start Tue Mar 31 2020 16:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.50700 * 109.47053 * 119.99605 * 2 1 3 5 5 H 1.08002 * 119.99880 * 125.28093 * 4 2 1 6 6 C 1.37879 * 120.00116 * 305.28520 * 4 2 1 7 7 N 1.31516 * 120.00184 * 149.81001 * 6 4 2 8 8 Si 1.86795 * 119.99872 * 329.80332 * 6 4 2 9 9 H 1.48503 * 109.47318 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47513 * 300.00345 * 8 6 4 11 11 H 1.48505 * 109.47241 * 60.00236 * 8 6 4 12 12 C 1.52996 * 109.47499 * 239.99840 * 2 1 3 13 13 S 1.81399 * 109.47074 * 59.99882 * 12 2 1 14 14 O 1.42095 * 110.54471 * 291.62733 * 13 12 2 15 15 O 1.42098 * 110.54296 * 68.37935 * 13 12 2 16 16 N 1.65606 * 104.44810 * 180.02562 * 13 12 2 17 17 C 1.46929 * 120.63021 * 256.75073 * 16 13 12 18 18 C 1.52756 * 109.00561 * 233.58696 * 17 16 13 19 19 C 1.53039 * 109.38350 * 305.58647 * 18 17 16 20 20 C 1.53037 * 109.53686 * 61.24300 * 19 18 17 21 21 C 1.46924 * 120.62981 * 77.03333 * 16 13 12 22 22 C 1.53000 * 109.58791 * 6.43329 * 21 16 13 23 23 C 1.50701 * 109.58452 * 246.15162 * 21 16 13 24 24 N 1.34785 * 119.99679 * 33.88893 * 23 21 16 25 25 O 1.21278 * 120.00194 * 213.88082 * 23 21 16 26 26 H 1.08998 * 109.47267 * 292.68976 * 1 2 3 27 27 H 1.09003 * 109.46838 * 52.69281 * 1 2 3 28 28 H 1.08997 * 109.46600 * 172.68825 * 1 2 3 29 29 H 1.09009 * 109.46936 * 183.45582 * 3 2 1 30 30 H 1.08996 * 109.47011 * 303.45158 * 3 2 1 31 31 H 1.08997 * 109.47284 * 63.45634 * 3 2 1 32 32 H 0.96995 * 119.99744 * 354.96344 * 7 6 4 33 33 H 1.08999 * 109.47274 * 179.97438 * 12 2 1 34 34 H 1.09008 * 109.46987 * 300.00052 * 12 2 1 35 35 H 1.09002 * 109.58218 * 353.41935 * 17 16 13 36 36 H 1.08997 * 109.58266 * 113.84321 * 17 16 13 37 37 H 1.09004 * 109.56178 * 185.55301 * 18 17 16 38 38 H 1.09001 * 109.36381 * 65.49974 * 18 17 16 39 39 H 1.09000 * 109.46359 * 301.21883 * 19 18 17 40 40 H 1.09006 * 109.46230 * 181.26477 * 19 18 17 41 41 H 1.09007 * 109.49775 * 178.68106 * 20 19 18 42 42 H 1.08997 * 109.49588 * 58.59233 * 20 19 18 43 43 H 1.09000 * 109.46866 * 68.85217 * 22 21 16 44 44 H 1.09000 * 109.47248 * 188.84850 * 22 21 16 45 45 H 1.08997 * 109.47431 * 308.85442 * 22 21 16 46 46 H 0.96994 * 119.99916 * 4.79850 * 24 23 21 47 47 H 0.97002 * 119.99297 * 184.79841 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.7217 -1.5361 1.1338 6 6 1.6118 -0.3061 2.4798 7 7 1.5227 -1.1802 3.4585 8 14 1.1688 1.4832 2.7825 9 1 0.7507 1.6572 4.1968 10 1 2.3507 2.3392 2.5074 11 1 0.0534 1.8758 1.8842 12 6 2.0401 -0.7212 -1.2492 13 16 1.4354 0.1338 -2.7303 14 8 0.0281 -0.0184 -2.8544 15 8 2.0481 1.4099 -2.8544 16 7 2.0532 -0.7410 -3.9935 17 6 3.2099 -0.2457 -4.7522 18 6 2.8579 -0.2245 -6.2385 19 6 2.3729 -1.6118 -6.6655 20 6 1.1155 -1.9802 -5.8748 21 6 1.4512 -2.0240 -4.3808 22 6 0.1737 -2.2562 -3.5715 23 6 2.4276 -3.1408 -4.1149 24 7 3.2675 -3.0655 -3.0636 25 8 2.4574 -4.1073 -4.8469 26 1 -0.3634 0.3964 0.9481 27 1 -0.3633 0.6229 -0.8174 28 1 -0.3632 -1.0193 -0.1308 29 1 3.1283 1.4431 -0.0620 30 1 1.6270 1.9739 -0.8574 31 1 1.7281 1.9382 0.9193 32 1 1.6820 -2.1210 3.2843 33 1 3.1301 -0.7208 -1.2493 34 1 1.6767 -1.7490 -1.2491 35 1 3.4583 0.7631 -4.4225 36 1 4.0623 -0.9055 -4.5907 37 1 3.7398 0.0471 -6.8186 38 1 2.0681 0.5064 -6.4124 39 1 3.1540 -2.3461 -6.4684 40 1 2.1427 -1.6040 -7.7309 41 1 0.7573 -2.9583 -6.1960 42 1 0.3422 -1.2328 -6.0522 43 1 -0.5892 -1.5433 -3.8845 44 1 -0.1854 -3.2711 -3.7426 45 1 0.3854 -2.1196 -2.5111 46 1 3.1970 -2.3272 -2.4384 47 1 3.9425 -3.7496 -2.9322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451396002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:03 Heat of formation + Delta-G solvation = -93.336008 kcal Electronic energy + Delta-G solvation = -30227.400340 eV Core-core repulsion = 26345.080593 eV Total energy + Delta-G solvation = -3882.319746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70570 -37.68773 -37.14501 -36.79762 -35.62393 -34.13983 -32.88133 -32.24319 -32.05021 -27.71302 -27.42506 -26.45060 -24.66699 -24.53842 -23.74495 -21.37904 -20.16858 -19.79907 -18.56457 -17.97272 -17.11182 -16.97784 -16.83015 -15.93996 -15.70316 -15.28086 -14.80983 -14.55208 -14.49916 -14.26319 -13.91071 -13.66363 -13.60284 -13.31407 -12.95212 -12.83877 -12.55898 -12.46815 -12.24066 -12.04281 -11.95693 -11.79683 -11.51025 -11.35323 -11.22073 -11.06981 -10.95944 -10.82377 -10.67158 -10.55363 -10.29489 -10.16622 -10.04168 -9.91004 -9.79116 -9.16795 -9.11188 -8.97152 -8.24030 -6.66270 -4.23548 0.43585 2.37014 2.78469 3.29034 3.34324 3.35197 3.55676 4.00332 4.27595 4.32545 4.36475 4.46743 4.68289 4.75623 4.89063 4.94637 4.96144 5.09279 5.18614 5.23227 5.39911 5.50040 5.55775 5.60032 5.65074 5.78007 5.86882 5.89721 5.92166 6.01211 6.09089 6.18639 6.21068 6.30607 6.34499 6.38239 6.41411 6.63214 6.67674 6.77506 7.06012 7.16756 7.24361 7.90369 8.09324 8.19727 8.69752 9.38627 10.69024 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.004774 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.605127 B = 5864.258991 C = 6392.168053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 C -0.180 4.180 4 C -0.607 4.607 5 H 0.062 0.938 6 C 0.049 3.951 7 N -0.879 5.879 8 Si 1.036 2.964 9 H -0.295 1.295 10 H -0.283 1.283 11 H -0.274 1.274 12 C -0.589 4.589 13 S 2.585 3.415 14 O -0.950 6.950 15 O -0.956 6.956 16 N -1.000 6.000 17 C 0.109 3.891 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.106 4.106 21 C 0.167 3.833 22 C -0.180 4.180 23 C 0.521 3.479 24 N -0.852 5.852 25 O -0.539 6.539 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.273 0.727 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.400 0.600 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -0.229 -16.971 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 C -0.237 4.237 4 C -0.645 4.645 5 H 0.081 0.919 6 C -0.160 4.160 7 N -0.510 5.510 8 Si 0.868 3.132 9 H -0.223 1.223 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.721 4.721 13 S 2.685 3.315 14 O -0.940 6.940 15 O -0.947 6.947 16 N -0.837 5.837 17 C -0.016 4.016 18 C -0.171 4.171 19 C -0.158 4.158 20 C -0.145 4.145 21 C 0.076 3.924 22 C -0.238 4.238 23 C 0.304 3.696 24 N -0.418 5.418 25 O -0.415 6.415 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.231 0.769 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.194 1.050 -16.472 16.549 hybrid contribution 1.355 -1.587 -0.376 2.120 sum 2.549 -0.537 -16.848 17.049 Atomic orbital electron populations 1.22624 0.96952 1.01498 1.01745 1.18141 0.92437 0.91495 0.91653 1.22783 1.02162 0.98103 1.00680 1.21525 1.33192 1.19835 0.89950 0.91938 1.25656 0.93067 1.04756 0.92548 1.70864 1.40021 1.03854 1.36216 0.84375 0.77209 0.76610 0.74989 1.22267 1.21052 1.20119 1.30700 1.11476 1.13084 1.16885 1.06016 0.75341 0.74822 0.75283 1.93604 1.29195 1.86121 1.85126 1.93527 1.78173 1.37424 1.85569 1.58201 1.44492 1.32624 1.48410 1.21494 0.87028 1.01058 0.92037 1.21805 1.01961 0.97938 0.95389 1.21529 0.97815 0.96759 0.99734 1.21736 0.98607 1.03398 0.90794 1.20579 0.92369 0.81029 0.98447 1.22796 0.96316 1.05221 0.99504 1.20882 0.81093 0.87564 0.80070 1.44125 1.37396 1.30994 1.29254 1.90719 1.69614 1.33260 1.47864 0.91410 0.94291 0.92520 0.91945 0.93726 0.92821 0.91694 0.85920 0.85817 0.87698 0.91610 0.90668 0.91149 0.91492 0.91325 0.89553 0.90142 0.86240 0.90248 0.91599 0.76888 0.76677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 7.40 37.16 0.27 -3.40 16 2 C 0.07 1.42 0.52 -155.66 -0.08 1.34 16 3 C -0.18 -3.84 7.32 37.16 0.27 -3.56 16 4 C -0.61 -15.37 8.41 -34.44 -0.29 -15.66 16 5 H 0.06 1.66 7.99 -52.49 -0.42 1.24 16 6 C 0.05 1.31 5.02 -17.82 -0.09 1.22 16 7 N -0.88 -25.13 13.70 55.43 0.76 -24.37 16 8 Si 1.04 24.37 23.46 -169.99 -3.99 20.38 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.30 6.78 56.52 0.38 -5.92 16 11 H -0.27 -5.99 5.84 56.52 0.33 -5.66 16 12 C -0.59 -10.04 3.17 37.16 0.12 -9.92 16 13 S 2.59 41.75 3.87 -107.50 -0.42 41.34 16 14 O -0.95 -16.68 11.45 -57.54 -0.66 -17.34 16 15 O -0.96 -17.25 13.99 -57.54 -0.80 -18.05 16 16 N -1.00 -12.84 2.22 -101.14 -0.22 -13.06 16 17 C 0.11 1.20 6.14 -3.93 -0.02 1.17 16 18 C -0.13 -1.26 6.06 -26.84 -0.16 -1.43 16 19 C -0.12 -1.21 5.70 -26.69 -0.15 -1.36 16 20 C -0.11 -1.19 4.54 -26.62 -0.12 -1.31 16 21 C 0.17 2.11 0.97 -132.64 -0.13 1.98 16 22 C -0.18 -2.37 6.90 37.16 0.26 -2.12 16 23 C 0.52 6.88 5.64 -10.98 -0.06 6.82 16 24 N -0.85 -9.71 8.74 31.22 0.27 -9.44 16 25 O -0.54 -8.39 16.28 5.56 0.09 -8.30 16 26 H 0.07 1.52 4.59 -51.93 -0.24 1.28 16 27 H 0.04 0.77 6.01 -51.93 -0.31 0.46 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.04 0.89 5.72 -51.93 -0.30 0.59 16 31 H 0.05 1.18 2.27 -51.93 -0.12 1.06 16 32 H 0.27 7.69 8.73 -40.82 -0.36 7.34 16 33 H 0.12 1.82 7.50 -51.92 -0.39 1.43 16 34 H 0.12 1.95 5.91 -51.92 -0.31 1.64 16 35 H 0.10 1.18 6.59 -51.93 -0.34 0.84 16 36 H 0.07 0.64 7.98 -51.93 -0.41 0.22 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.74 6.92 -51.93 -0.36 0.39 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.95 7.68 -51.93 -0.40 0.56 16 42 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 43 H 0.12 1.62 6.34 -51.93 -0.33 1.29 16 44 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.07 0.91 4.70 -51.93 -0.24 0.67 16 46 H 0.40 4.51 4.85 -40.82 -0.20 4.31 16 47 H 0.40 3.92 8.93 -40.82 -0.36 3.55 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -31.27 340.88 -6.95 -38.22 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.93 Total: 11.70 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -0.19 Total: -26.22 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.81 Total: -46.87 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.37 Total: -43.70 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -3.99 Total: 20.38 kcal Atomic # 16 Polarization: 41.75 SS G_CDS: -0.42 Total: 41.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.27 -6.95 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451396002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.112 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds